Wall clock time and date at job start Tue Mar 31 2020 20:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.49719 * 2 1 4 4 C 1.53046 * 109.52651 * 239.92595 * 2 1 3 5 5 C 1.53044 * 109.53378 * 301.39653 * 4 2 1 6 6 C 1.53631 * 109.24102 * 298.50792 * 5 4 2 7 7 N 1.46932 * 108.54051 * 54.85738 * 6 5 4 8 8 C 1.34774 * 120.62797 * 126.37403 * 7 6 5 9 9 O 1.21523 * 119.99833 * 188.07164 * 8 7 6 10 10 C 1.48111 * 120.00021 * 8.06086 * 8 7 6 11 11 C 1.39344 * 119.70756 * 190.03134 * 10 8 7 12 12 C 1.38523 * 119.07793 * 180.02562 * 11 10 8 13 13 C 1.38767 * 118.47784 * 359.97438 * 12 11 10 14 14 Cl 1.73600 * 120.33945 * 179.97438 * 13 12 11 15 15 C 1.38727 * 119.32496 * 359.97438 * 13 12 11 16 16 N 1.31487 * 120.87583 * 0.02562 * 15 13 12 17 17 C 1.46930 * 118.73904 * 306.09259 * 7 6 5 18 18 H 1.08999 * 109.58891 * 294.07559 * 17 7 6 19 19 C 1.53000 * 109.58377 * 173.64961 * 17 7 6 20 20 N 1.46497 * 109.47282 * 70.13727 * 19 17 7 21 21 C 1.36934 * 120.00191 * 174.65717 * 20 19 17 22 22 H 1.08005 * 119.99855 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00134 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99873 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46860 * 60.00255 * 25 23 21 27 27 H 1.48495 * 109.46897 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47142 * 300.00365 * 25 23 21 29 29 H 1.08995 * 109.46756 * 299.92788 * 1 2 3 30 30 H 1.08994 * 109.47725 * 59.93302 * 1 2 3 31 31 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46125 * 61.40701 * 4 2 1 33 33 H 1.08990 * 109.46024 * 181.37200 * 4 2 1 34 34 H 1.08991 * 109.50141 * 58.58314 * 5 4 2 35 35 H 1.08993 * 109.49616 * 178.68267 * 5 4 2 36 36 H 1.09001 * 109.73738 * 295.12218 * 6 5 4 37 37 H 1.08994 * 109.66794 * 174.55052 * 6 5 4 38 38 H 1.08010 * 120.46269 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.75853 * 180.25793 * 12 11 10 40 40 H 1.07994 * 119.56050 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.46762 * 190.13889 * 19 17 7 42 42 H 1.09005 * 109.47255 * 310.13739 * 19 17 7 43 43 H 0.97000 * 120.00000 * 354.65942 * 20 19 17 44 44 H 0.96996 * 119.99630 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0415 -0.7228 -1.2483 5 6 1.5044 -2.1558 -1.2660 6 6 2.0204 -2.9053 -0.0281 7 7 1.6523 -2.1380 1.1697 8 6 0.9757 -2.7222 2.1783 9 8 0.5493 -2.0478 3.0948 10 6 0.7517 -4.1863 2.1695 11 6 -0.1203 -4.7570 3.0945 12 6 -0.3198 -6.1276 3.0749 13 6 0.3602 -6.8818 2.1292 14 17 0.1467 -8.6033 2.0618 15 6 1.2124 -6.2461 1.2380 16 7 1.3824 -4.9429 1.2799 17 6 2.0414 -0.7234 1.2497 18 1 3.1275 -0.6453 1.2984 19 6 1.4224 -0.0911 2.4979 20 7 2.0772 -0.6281 3.6933 21 6 1.7644 -0.1271 4.9287 22 1 1.0347 0.6637 5.0219 23 6 2.3845 -0.6362 6.0615 24 7 3.2734 -1.6002 5.9481 25 14 1.9572 0.0468 7.7469 26 1 0.5094 -0.1536 8.0097 27 1 2.7505 -0.6612 8.7835 28 1 2.2715 1.4974 7.7873 29 1 -0.3633 0.5127 0.8906 30 1 -0.3634 0.5148 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6993 -0.1958 -2.1389 33 1 3.1311 -0.7435 -1.2349 34 1 0.4147 -2.1361 -1.2543 35 1 1.8499 -2.6627 -2.1669 36 1 3.1048 -3.0014 -0.0816 37 1 1.5655 -3.8947 0.0177 38 1 -0.6335 -4.1392 3.8167 39 1 -0.9927 -6.5980 3.7767 40 1 1.7438 -6.8294 0.5007 41 1 1.5589 0.9897 2.4633 42 1 0.3576 -0.3220 2.5321 43 1 2.7323 -1.3385 3.6097 44 1 3.7069 -1.9557 6.7396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715427981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:29 Heat of formation + Delta-G solvation = 42.415883 kcal Electronic energy + Delta-G solvation = -28334.642946 eV Core-core repulsion = 24507.593094 eV Total energy + Delta-G solvation = -3827.049852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.14337 -40.78837 -38.53804 -37.72485 -36.32803 -34.80893 -33.68923 -33.44871 -32.13170 -31.77900 -28.53946 -27.24586 -26.21291 -25.05394 -24.79385 -24.15577 -22.65313 -21.51536 -19.83030 -19.14868 -18.16471 -18.02870 -17.49602 -16.84965 -16.65656 -16.29981 -16.15669 -15.78914 -15.45659 -15.15792 -15.08185 -14.98932 -14.64877 -14.40784 -14.13662 -13.79341 -13.71501 -13.48991 -13.27756 -13.06846 -12.93069 -12.79146 -12.58867 -12.51642 -12.27057 -12.10635 -11.99603 -11.83828 -11.62420 -11.38236 -11.23025 -11.01716 -10.93097 -10.36150 -10.07679 -9.79797 -9.37740 -8.66184 -7.84688 -5.04767 -0.57387 0.01352 0.87206 1.43382 1.47670 1.53280 1.78898 2.07823 2.61044 2.70046 3.07449 3.48270 3.57133 3.62798 3.75585 3.80782 3.85757 3.96420 4.00443 4.22510 4.35082 4.41109 4.46887 4.57203 4.66027 4.71233 4.73631 4.82051 4.83693 4.89969 4.96000 5.06648 5.11600 5.15953 5.26650 5.31032 5.32878 5.40906 5.52575 5.53207 5.60600 5.95808 6.36174 6.44234 6.66440 7.39534 7.43925 8.21185 8.44518 9.39876 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008480 B = 0.004975 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.097872 B = 5626.646657 C = 8330.278149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.108 4.108 5 C -0.129 4.129 6 C 0.074 3.926 7 N -0.588 5.588 8 C 0.528 3.472 9 O -0.497 6.497 10 C 0.077 3.923 11 C -0.114 4.114 12 C -0.062 4.062 13 C -0.072 4.072 14 Cl -0.034 7.034 15 C 0.109 3.891 16 N -0.440 5.440 17 C 0.148 3.852 18 H 0.056 0.944 19 C 0.160 3.840 20 N -0.709 5.709 21 C -0.212 4.212 22 H 0.063 0.937 23 C -0.082 4.082 24 N -0.975 5.975 25 Si 0.967 3.033 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.278 1.278 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.174 0.826 40 H 0.204 0.796 41 H 0.009 0.991 42 H 0.040 0.960 43 H 0.365 0.635 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 -11.104 -19.034 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.167 4.167 6 C -0.048 4.048 7 N -0.322 5.322 8 C 0.313 3.687 9 O -0.369 6.369 10 C -0.059 4.059 11 C -0.135 4.135 12 C -0.088 4.088 13 C -0.101 4.101 14 Cl -0.005 7.005 15 C -0.051 4.051 16 N -0.153 5.153 17 C 0.045 3.955 18 H 0.074 0.926 19 C 0.034 3.966 20 N -0.349 5.349 21 C -0.344 4.344 22 H 0.081 0.919 23 C -0.273 4.273 24 N -0.628 5.628 25 Si 0.797 3.203 26 H -0.212 1.212 27 H -0.222 1.222 28 H -0.205 1.205 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.192 0.808 40 H 0.221 0.779 41 H 0.027 0.973 42 H 0.058 0.942 43 H 0.196 0.804 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.353 -10.303 -18.991 22.521 hybrid contribution -0.270 -0.340 2.129 2.173 sum -6.624 -10.643 -16.862 21.011 Atomic orbital electron populations 1.21776 0.94731 1.01401 1.01497 1.21441 0.96702 0.99488 0.93627 0.89637 1.21541 1.00591 0.95820 0.96636 1.22050 1.00981 0.95830 0.97875 1.23094 1.00666 0.98589 0.82412 1.47725 1.55375 1.10488 1.18609 1.18312 0.81323 0.86273 0.82799 1.91114 1.48146 1.62029 1.35599 1.21473 0.95740 0.94539 0.94130 1.22111 0.97534 0.95740 0.98125 1.21773 0.97947 0.92019 0.97065 1.22339 1.00928 0.87349 0.99522 1.98398 1.96145 1.08219 1.97746 1.23538 0.94358 0.89862 0.97349 1.67781 1.21352 1.05991 1.20152 1.21451 0.97672 0.80643 0.95751 0.92629 1.21072 0.96965 0.93566 0.84973 1.42347 1.47537 1.43219 1.01837 1.19453 1.16390 1.12764 0.85816 0.91880 1.25368 1.00785 1.00303 1.00866 1.69823 1.32770 1.31878 1.28314 0.85282 0.77054 0.77659 0.80267 1.21185 1.22200 1.20477 0.94312 0.90716 0.93444 0.89707 0.91697 0.91915 0.88658 0.92450 0.83890 0.84233 0.80835 0.77893 0.97322 0.94248 0.80424 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.22 71.98 0.59 -2.92 16 2 C -0.09 -2.40 2.79 -10.72 -0.03 -2.43 16 3 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 4 C -0.11 -2.11 5.43 30.62 0.17 -1.95 16 5 C -0.13 -2.48 5.76 30.82 0.18 -2.30 16 6 C 0.07 1.87 5.89 86.51 0.51 2.38 16 7 N -0.59 -19.96 2.41 -797.25 -1.92 -21.88 16 8 C 0.53 21.12 7.02 86.87 0.61 21.73 16 9 O -0.50 -24.51 10.36 -3.79 -0.04 -24.55 16 10 C 0.08 2.58 6.57 41.90 0.28 2.85 16 11 C -0.11 -3.47 9.63 22.60 0.22 -3.26 16 12 C -0.06 -1.39 9.97 22.46 0.22 -1.17 16 13 C -0.07 -1.42 6.35 22.51 0.14 -1.28 16 14 Cl -0.03 -0.54 28.99 -2.72 -0.08 -0.62 16 15 C 0.11 2.17 10.98 84.86 0.93 3.10 16 16 N -0.44 -11.72 6.15 -184.83 -1.14 -12.85 16 17 C 0.15 5.25 2.63 44.97 0.12 5.37 16 18 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 19 C 0.16 7.25 4.03 86.38 0.35 7.60 16 20 N -0.71 -39.75 3.30 -343.45 -1.13 -40.88 16 21 C -0.21 -12.94 9.78 84.03 0.82 -12.12 16 22 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.08 -5.11 5.50 84.86 0.47 -4.64 16 24 N -0.97 -63.95 13.06 21.65 0.28 -63.67 16 25 Si 0.97 49.86 29.55 68.60 2.03 51.89 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 27 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 28 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 29 H 0.04 1.16 6.57 -2.39 -0.02 1.14 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.30 5.97 -2.39 -0.01 1.28 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.26 6.34 -2.39 -0.02 1.25 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.14 3.51 4.06 -62.30 -0.25 3.26 16 38 H 0.14 4.70 7.68 -2.91 -0.02 4.68 16 39 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 40 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.01 0.41 8.12 -2.39 -0.02 0.39 16 42 H 0.04 1.92 4.97 -2.39 -0.01 1.90 16 43 H 0.36 22.05 7.13 -92.71 -0.66 21.39 16 44 H 0.24 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -76.26 355.78 3.71 -72.55 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.13 Total: 29.04 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.57 Total: 10.96 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -3.91 Total: -139.28 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.04 Total: -24.55 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.03 Total: 51.89 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -76.26 3.71 -72.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715427981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.966 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds