Wall clock time and date at job start Tue Mar 31 2020 20:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.52781 * 2 1 4 4 C 1.53045 * 109.50035 * 120.07657 * 2 1 3 5 5 C 1.53046 * 109.53290 * 58.58741 * 4 2 1 6 6 C 1.53187 * 109.31464 * 61.36678 * 5 4 2 7 7 N 1.46928 * 108.77378 * 305.36297 * 6 5 4 8 8 C 1.34776 * 120.62827 * 233.63011 * 7 6 5 9 9 O 1.21525 * 119.99871 * 180.16108 * 8 7 6 10 10 C 1.48111 * 120.00471 * 0.16557 * 8 7 6 11 11 C 1.39338 * 119.70938 * 158.28520 * 10 8 7 12 12 C 1.38523 * 119.07675 * 179.97438 * 11 10 8 13 13 C 1.38769 * 118.47670 * 359.97438 * 12 11 10 14 14 Cl 1.73605 * 120.33786 * 180.02562 * 13 12 11 15 15 C 1.38719 * 119.32680 * 0.02562 * 13 12 11 16 16 N 1.31488 * 120.87510 * 359.74245 * 15 13 12 17 17 C 1.46925 * 118.73979 * 53.60879 * 7 6 5 18 18 H 1.08998 * 109.58160 * 66.32118 * 17 7 6 19 19 C 1.52999 * 109.58709 * 186.60039 * 17 7 6 20 20 N 1.46496 * 109.47459 * 286.29229 * 19 17 7 21 21 C 1.36934 * 120.00225 * 178.07618 * 20 19 17 22 22 H 1.08006 * 119.99941 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00537 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00257 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99485 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47387 * 89.99781 * 25 23 21 27 27 H 1.48502 * 109.46811 * 210.00106 * 25 23 21 28 28 H 1.48502 * 109.47099 * 329.99563 * 25 23 21 29 29 H 1.08997 * 109.47078 * 180.08471 * 1 2 3 30 30 H 1.09000 * 109.46942 * 300.08353 * 1 2 3 31 31 H 1.08997 * 109.47272 * 60.08145 * 1 2 3 32 32 H 1.08998 * 109.46077 * 298.56721 * 4 2 1 33 33 H 1.08996 * 109.46173 * 178.60471 * 4 2 1 34 34 H 1.09002 * 109.49256 * 301.41231 * 5 4 2 35 35 H 1.09001 * 109.49310 * 181.32104 * 5 4 2 36 36 H 1.09001 * 109.58432 * 185.58211 * 6 5 4 37 37 H 1.08990 * 109.59027 * 65.15259 * 6 5 4 38 38 H 1.08005 * 120.46403 * 359.95173 * 11 10 8 39 39 H 1.08005 * 120.76407 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.56211 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.47121 * 46.29734 * 19 17 7 42 42 H 1.09004 * 109.46873 * 166.29117 * 19 17 7 43 43 H 0.97002 * 119.99939 * 358.08320 * 20 19 17 44 44 H 0.97005 * 119.99530 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7230 1.2484 5 6 1.5030 -2.1557 1.2661 6 6 2.0140 -2.9040 0.0309 7 7 1.6515 -2.1382 -1.1695 8 6 0.9740 -2.7219 -2.1777 9 8 0.6826 -2.0785 -3.1666 10 6 0.5844 -4.1476 -2.0806 11 6 -0.4662 -4.6309 -2.8579 12 6 -0.8192 -5.9666 -2.7571 13 6 -0.1080 -6.7746 -1.8813 14 17 -0.5090 -8.4557 -1.7173 15 6 0.9268 -6.2254 -1.1383 16 7 1.2428 -4.9547 -1.2579 17 6 2.0413 -0.7238 -1.2495 18 1 3.1273 -0.6465 -1.3005 19 6 1.4229 -0.0913 -2.4979 20 7 2.1341 -0.5638 -3.6882 21 6 1.7297 -0.1603 -4.9327 22 1 0.8865 0.5067 -5.0367 23 6 2.4039 -0.6076 -6.0607 24 7 2.0155 -0.2193 -7.2567 25 14 3.8626 -1.7606 -5.8808 26 1 3.3883 -3.1674 -5.9110 27 1 4.8131 -1.5344 -6.9992 28 1 4.5462 -1.4962 -4.5893 29 1 -0.3633 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8892 31 1 -0.3634 0.5125 -0.8907 32 1 1.6988 -0.1957 2.1389 33 1 3.1305 -0.7443 1.2353 34 1 0.4133 -2.1353 1.2542 35 1 1.8481 -2.6627 2.1672 36 1 1.5553 -3.8918 -0.0136 37 1 3.0979 -3.0043 0.0868 38 1 -0.9982 -3.9732 -3.5294 39 1 -1.6294 -6.3699 -3.3465 40 1 1.4826 -6.8507 -0.4553 41 1 0.3724 -0.3740 -2.5661 42 1 1.5035 0.9939 -2.4332 43 1 2.8915 -1.1626 -3.5949 44 1 2.4865 -0.5323 -8.0449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715427984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:37 Heat of formation + Delta-G solvation = 65.117838 kcal Electronic energy + Delta-G solvation = -28420.934085 eV Core-core repulsion = 24594.868664 eV Total energy + Delta-G solvation = -3826.065421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.07107 -39.75787 -37.40360 -36.91479 -34.71921 -33.63933 -32.50036 -32.10193 -31.19866 -30.46678 -27.34777 -26.21219 -24.83214 -23.99830 -23.70908 -22.36990 -21.31126 -20.37780 -18.72108 -17.72467 -17.23440 -16.82760 -16.56063 -15.61413 -15.37040 -15.14219 -15.00306 -14.32639 -14.20077 -14.01382 -13.85984 -13.70289 -13.53809 -12.96340 -12.79394 -12.60701 -12.56647 -12.44480 -12.22576 -12.11838 -11.67524 -11.60589 -11.40245 -11.17774 -10.95948 -10.76766 -10.66831 -10.47189 -10.22220 -10.12114 -9.95878 -9.41982 -9.35751 -9.19284 -8.78363 -8.52652 -8.13682 -6.85455 -5.57908 -2.82703 0.38825 0.88449 1.68399 2.86026 3.18866 3.47393 3.51812 3.54592 3.69592 4.06135 4.40538 4.52203 4.66256 4.76265 4.80601 4.86858 4.91027 4.95491 5.12748 5.34564 5.42579 5.56031 5.58883 5.62671 5.64088 5.69441 5.74540 5.80767 5.86951 5.89113 5.95260 6.05989 6.06353 6.16284 6.25610 6.30406 6.38773 6.48655 6.64978 6.83983 7.19216 7.40582 7.79549 8.18337 8.59391 8.66068 9.41238 10.14650 10.35366 11.61896 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.005122 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.182500 B = 5464.868609 C = 7670.930725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.080 3.920 7 N -0.592 5.592 8 C 0.524 3.476 9 O -0.434 6.434 10 C 0.099 3.901 11 C -0.102 4.102 12 C -0.068 4.068 13 C -0.082 4.082 14 Cl -0.056 7.056 15 C 0.104 3.896 16 N -0.439 5.439 17 C 0.141 3.859 18 H 0.069 0.931 19 C 0.162 3.838 20 N -0.724 5.724 21 C -0.202 4.202 22 H 0.087 0.913 23 C -0.004 4.004 24 N -0.942 5.942 25 Si 0.881 3.119 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.059 0.941 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.168 0.832 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.355 0.645 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 -12.008 20.355 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.043 4.043 7 N -0.328 5.328 8 C 0.307 3.693 9 O -0.302 6.302 10 C -0.039 4.039 11 C -0.123 4.123 12 C -0.095 4.095 13 C -0.111 4.111 14 Cl -0.028 7.028 15 C -0.056 4.056 16 N -0.152 5.152 17 C 0.038 3.962 18 H 0.086 0.914 19 C 0.035 3.965 20 N -0.368 5.368 21 C -0.333 4.333 22 H 0.105 0.895 23 C -0.198 4.198 24 N -0.592 5.592 25 Si 0.713 3.287 26 H -0.217 1.217 27 H -0.221 1.221 28 H -0.209 1.209 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.177 0.823 39 H 0.168 0.832 40 H 0.186 0.814 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.188 0.812 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.287 -11.276 20.065 23.412 hybrid contribution 0.548 -1.580 -0.378 1.715 sum -3.739 -12.856 19.688 23.809 Atomic orbital electron populations 1.21853 0.94830 1.01940 1.01575 1.21446 0.96738 0.99376 0.94225 0.90114 1.21555 1.00393 0.95770 0.97431 1.22004 1.01304 0.96096 0.98134 1.22680 1.00579 0.98051 0.82992 1.47658 1.56297 1.10727 1.18143 1.17947 0.82163 0.84899 0.84249 1.91293 1.49815 1.60381 1.28715 1.21830 0.93430 0.95502 0.93109 1.22188 0.96611 0.95321 0.98183 1.21571 0.98950 0.92827 0.96112 1.22250 1.00079 0.87117 1.01647 1.98385 1.93230 1.14214 1.96942 1.22922 0.93658 0.91558 0.97437 1.67815 1.26895 1.03482 1.16990 1.21604 0.98806 0.79691 0.96095 0.91356 1.20986 0.97348 0.94431 0.83701 1.42627 1.34981 1.56693 1.02479 1.18990 1.11055 1.21403 0.81805 0.89511 1.24540 0.99419 1.00677 0.95169 1.69693 1.43062 1.49674 0.96785 0.86573 0.83879 0.81850 0.76357 1.21672 1.22116 1.20892 0.92579 0.93273 0.91888 0.92110 0.92022 0.91616 0.91489 0.84860 0.92309 0.82303 0.83164 0.81449 0.92443 0.96200 0.81250 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.24 37.16 0.31 -1.48 16 2 C -0.10 -1.22 2.77 -90.50 -0.25 -1.47 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.17 5.43 -26.68 -0.14 -1.32 16 5 C -0.14 -1.38 5.74 -26.61 -0.15 -1.54 16 6 C 0.08 0.98 5.99 -3.71 -0.02 0.96 16 7 N -0.59 -9.20 2.41 -166.24 -0.40 -9.60 16 8 C 0.52 9.38 7.36 -12.21 -0.09 9.29 16 9 O -0.43 -9.63 10.19 5.34 0.05 -9.57 16 10 C 0.10 1.49 6.45 -83.02 -0.54 0.96 16 11 C -0.10 -1.38 9.62 -39.07 -0.38 -1.75 16 12 C -0.07 -0.73 9.97 -39.28 -0.39 -1.13 16 13 C -0.08 -0.83 6.35 -39.21 -0.25 -1.08 16 14 Cl -0.06 -0.50 28.99 -51.86 -1.50 -2.00 16 15 C 0.10 1.07 10.98 -17.52 -0.19 0.88 16 16 N -0.44 -5.67 6.37 -9.77 -0.06 -5.73 16 17 C 0.14 2.27 2.61 -67.60 -0.18 2.09 16 18 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.16 3.30 3.92 -4.04 -0.02 3.29 16 20 N -0.72 -18.22 3.16 -59.91 -0.19 -18.41 16 21 C -0.20 -6.00 9.90 -15.06 -0.15 -6.15 16 22 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 24 N -0.94 -30.93 13.97 55.49 0.78 -30.15 16 25 Si 0.88 23.90 27.74 -169.99 -4.71 19.18 16 26 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 27 H -0.29 -8.00 7.11 56.52 0.40 -7.59 16 28 H -0.28 -7.29 6.52 56.52 0.37 -6.92 16 29 H 0.06 0.72 5.97 -51.93 -0.31 0.41 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.87 6.66 -51.93 -0.35 0.52 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.69 6.33 -51.93 -0.33 0.36 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.14 1.61 3.99 -78.71 -0.31 1.29 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.16 2.20 7.80 -52.48 -0.41 1.79 16 39 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.17 1.25 8.06 -52.48 -0.42 0.82 16 41 H 0.06 1.25 5.18 -51.93 -0.27 0.98 16 42 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 43 H 0.36 9.06 5.49 -40.82 -0.22 8.84 16 44 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -34.43 353.35 -9.27 -43.70 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.02 Total: 5.93 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.54 Total: 1.33 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.12 Total: -63.90 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.05 Total: -9.57 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.71 Total: 19.18 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.43 -9.27 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715427984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.815 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds