Wall clock time and date at job start Tue Mar 31 2020 20:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.52781 * 2 1 4 4 C 1.53045 * 109.50035 * 120.07657 * 2 1 3 5 5 C 1.53046 * 109.53290 * 58.58741 * 4 2 1 6 6 C 1.53187 * 109.31464 * 61.36678 * 5 4 2 7 7 N 1.46928 * 108.77378 * 305.36297 * 6 5 4 8 8 C 1.34776 * 120.62827 * 233.63011 * 7 6 5 9 9 O 1.21525 * 119.99871 * 180.16108 * 8 7 6 10 10 C 1.48111 * 120.00471 * 0.16557 * 8 7 6 11 11 C 1.39338 * 119.70938 * 158.28520 * 10 8 7 12 12 C 1.38523 * 119.07675 * 179.97438 * 11 10 8 13 13 C 1.38769 * 118.47670 * 359.97438 * 12 11 10 14 14 Cl 1.73605 * 120.33786 * 180.02562 * 13 12 11 15 15 C 1.38719 * 119.32680 * 0.02562 * 13 12 11 16 16 N 1.31488 * 120.87510 * 359.74245 * 15 13 12 17 17 C 1.46925 * 118.73979 * 53.60879 * 7 6 5 18 18 H 1.08998 * 109.58160 * 66.32118 * 17 7 6 19 19 C 1.52999 * 109.58709 * 186.60039 * 17 7 6 20 20 N 1.46496 * 109.47459 * 286.29229 * 19 17 7 21 21 C 1.36934 * 120.00225 * 178.07618 * 20 19 17 22 22 H 1.08006 * 119.99941 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00537 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00257 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99485 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47387 * 89.99781 * 25 23 21 27 27 H 1.48502 * 109.46811 * 210.00106 * 25 23 21 28 28 H 1.48502 * 109.47099 * 329.99563 * 25 23 21 29 29 H 1.08997 * 109.47078 * 180.08471 * 1 2 3 30 30 H 1.09000 * 109.46942 * 300.08353 * 1 2 3 31 31 H 1.08997 * 109.47272 * 60.08145 * 1 2 3 32 32 H 1.08998 * 109.46077 * 298.56721 * 4 2 1 33 33 H 1.08996 * 109.46173 * 178.60471 * 4 2 1 34 34 H 1.09002 * 109.49256 * 301.41231 * 5 4 2 35 35 H 1.09001 * 109.49310 * 181.32104 * 5 4 2 36 36 H 1.09001 * 109.58432 * 185.58211 * 6 5 4 37 37 H 1.08990 * 109.59027 * 65.15259 * 6 5 4 38 38 H 1.08005 * 120.46403 * 359.95173 * 11 10 8 39 39 H 1.08005 * 120.76407 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.56211 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.47121 * 46.29734 * 19 17 7 42 42 H 1.09004 * 109.46873 * 166.29117 * 19 17 7 43 43 H 0.97002 * 119.99939 * 358.08320 * 20 19 17 44 44 H 0.97005 * 119.99530 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7230 1.2484 5 6 1.5030 -2.1557 1.2661 6 6 2.0140 -2.9040 0.0309 7 7 1.6515 -2.1382 -1.1695 8 6 0.9740 -2.7219 -2.1777 9 8 0.6826 -2.0785 -3.1666 10 6 0.5844 -4.1476 -2.0806 11 6 -0.4662 -4.6309 -2.8579 12 6 -0.8192 -5.9666 -2.7571 13 6 -0.1080 -6.7746 -1.8813 14 17 -0.5090 -8.4557 -1.7173 15 6 0.9268 -6.2254 -1.1383 16 7 1.2428 -4.9547 -1.2579 17 6 2.0413 -0.7238 -1.2495 18 1 3.1273 -0.6465 -1.3005 19 6 1.4229 -0.0913 -2.4979 20 7 2.1341 -0.5638 -3.6882 21 6 1.7297 -0.1603 -4.9327 22 1 0.8865 0.5067 -5.0367 23 6 2.4039 -0.6076 -6.0607 24 7 2.0155 -0.2193 -7.2567 25 14 3.8626 -1.7606 -5.8808 26 1 3.3883 -3.1674 -5.9110 27 1 4.8131 -1.5344 -6.9992 28 1 4.5462 -1.4962 -4.5893 29 1 -0.3633 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8892 31 1 -0.3634 0.5125 -0.8907 32 1 1.6988 -0.1957 2.1389 33 1 3.1305 -0.7443 1.2353 34 1 0.4133 -2.1353 1.2542 35 1 1.8481 -2.6627 2.1672 36 1 1.5553 -3.8918 -0.0136 37 1 3.0979 -3.0043 0.0868 38 1 -0.9982 -3.9732 -3.5294 39 1 -1.6294 -6.3699 -3.3465 40 1 1.4826 -6.8507 -0.4553 41 1 0.3724 -0.3740 -2.5661 42 1 1.5035 0.9939 -2.4332 43 1 2.8915 -1.1626 -3.5949 44 1 2.4865 -0.5323 -8.0449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715427984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:33 Heat of formation + Delta-G solvation = 43.501923 kcal Electronic energy + Delta-G solvation = -28421.871421 eV Core-core repulsion = 24594.868664 eV Total energy + Delta-G solvation = -3827.002758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.21680 -40.85051 -38.61498 -37.75835 -36.51883 -34.83343 -33.81206 -33.51482 -32.20486 -32.18956 -28.74748 -27.31257 -26.24145 -25.01534 -24.80865 -23.97955 -22.72334 -21.59068 -20.03152 -19.43365 -18.23273 -18.14428 -17.57050 -16.91591 -16.63702 -16.46228 -16.17198 -15.89408 -15.46598 -15.33251 -15.10245 -14.79134 -14.75754 -14.58791 -14.11606 -13.96669 -13.84590 -13.58623 -13.48042 -13.13692 -13.11252 -12.94945 -12.62626 -12.52303 -12.27465 -12.14284 -11.95725 -11.83764 -11.72448 -11.39938 -11.27448 -11.06023 -10.96762 -10.48251 -10.15313 -9.86004 -9.49835 -8.94221 -7.94745 -5.17838 -0.60922 -0.03154 0.84608 1.27672 1.32518 1.38811 1.72079 1.98101 2.50121 2.58043 3.03594 3.37619 3.50399 3.58997 3.62799 3.71909 3.80883 3.91438 3.97177 4.11734 4.26106 4.30819 4.37659 4.53909 4.61767 4.67615 4.70069 4.77787 4.78989 4.86193 4.93225 5.04198 5.08390 5.13315 5.22676 5.28322 5.30003 5.35151 5.46013 5.57302 5.80944 5.87618 6.28082 6.38969 6.57117 7.16345 7.33446 7.95189 8.13575 9.29051 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.005122 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.182500 B = 5464.868609 C = 7670.930725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.088 0.912 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.074 3.926 7 N -0.587 5.587 8 C 0.524 3.476 9 O -0.497 6.497 10 C 0.075 3.925 11 C -0.115 4.115 12 C -0.062 4.062 13 C -0.072 4.072 14 Cl -0.034 7.034 15 C 0.109 3.891 16 N -0.441 5.441 17 C 0.144 3.856 18 H 0.066 0.934 19 C 0.166 3.834 20 N -0.726 5.726 21 C -0.184 4.184 22 H 0.049 0.951 23 C -0.072 4.072 24 N -0.993 5.993 25 Si 0.950 3.050 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.262 1.262 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.175 0.825 40 H 0.204 0.796 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.354 0.646 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -14.838 24.307 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.047 4.047 7 N -0.322 5.322 8 C 0.309 3.691 9 O -0.369 6.369 10 C -0.062 4.062 11 C -0.136 4.136 12 C -0.088 4.088 13 C -0.101 4.101 14 Cl -0.005 7.005 15 C -0.050 4.050 16 N -0.154 5.154 17 C 0.041 3.959 18 H 0.084 0.916 19 C 0.040 3.960 20 N -0.370 5.370 21 C -0.315 4.315 22 H 0.067 0.933 23 C -0.262 4.262 24 N -0.647 5.647 25 Si 0.780 3.220 26 H -0.221 1.221 27 H -0.220 1.220 28 H -0.187 1.187 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.192 0.808 40 H 0.221 0.779 41 H 0.060 0.940 42 H 0.033 0.967 43 H 0.186 0.814 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.306 -14.122 24.134 28.157 hybrid contribution 0.071 -0.892 -1.436 1.692 sum -3.235 -15.014 22.699 27.406 Atomic orbital electron populations 1.21799 0.94874 1.01446 1.01569 1.21448 0.96604 0.99682 0.93531 0.89338 1.21542 1.00766 0.95661 0.96593 1.21977 1.01033 0.95942 0.97898 1.22940 1.01050 0.98321 0.82386 1.47851 1.55037 1.10619 1.18663 1.18468 0.80873 0.86040 0.83742 1.91267 1.52784 1.62026 1.30835 1.21438 0.94958 0.94508 0.95263 1.22144 0.96708 0.96545 0.98165 1.21794 0.99323 0.91576 0.96098 1.22361 0.99223 0.88063 1.00440 1.98406 1.93018 1.12310 1.96741 1.23502 0.93458 0.90785 0.97285 1.67761 1.26679 1.04424 1.16513 1.21525 0.98298 0.80463 0.95605 0.91566 1.20995 0.96568 0.94223 0.84231 1.42530 1.35361 1.56900 1.02170 1.18897 1.09116 1.19573 0.83960 0.93311 1.25233 1.02938 1.03214 0.94796 1.69870 1.45134 1.52118 0.97581 0.85458 0.80443 0.79052 0.77052 1.22139 1.22016 1.18692 0.93324 0.90747 0.94380 0.89784 0.91354 0.92004 0.88618 0.84350 0.91707 0.83939 0.80768 0.77905 0.94044 0.96684 0.81367 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.24 71.98 0.59 -2.73 16 2 C -0.09 -2.16 2.77 -10.72 -0.03 -2.19 16 3 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 4 C -0.11 -1.82 5.43 30.62 0.17 -1.65 16 5 C -0.13 -2.15 5.74 30.67 0.18 -1.97 16 6 C 0.07 1.63 5.99 86.36 0.52 2.15 16 7 N -0.59 -17.90 2.41 -798.14 -1.92 -19.82 16 8 C 0.52 19.18 7.36 86.87 0.64 19.81 16 9 O -0.50 -23.29 10.19 -3.79 -0.04 -23.33 16 10 C 0.07 2.23 6.45 41.90 0.27 2.50 16 11 C -0.11 -3.11 9.62 22.60 0.22 -2.89 16 12 C -0.06 -1.22 9.97 22.46 0.22 -0.99 16 13 C -0.07 -1.24 6.35 22.51 0.14 -1.10 16 14 Cl -0.03 -0.47 28.99 -2.72 -0.08 -0.55 16 15 C 0.11 1.89 10.98 84.86 0.93 2.83 16 16 N -0.44 -10.43 6.37 -184.83 -1.18 -11.61 16 17 C 0.14 4.60 2.61 44.97 0.12 4.71 16 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.17 7.05 3.92 86.38 0.34 7.39 16 20 N -0.73 -37.96 3.16 -343.45 -1.08 -39.04 16 21 C -0.18 -11.50 9.90 84.03 0.83 -10.67 16 22 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 23 C -0.07 -4.65 5.50 84.86 0.47 -4.18 16 24 N -0.99 -68.40 13.97 21.65 0.30 -68.10 16 25 Si 0.95 51.04 27.74 68.60 1.90 52.95 16 26 H -0.29 -15.85 7.11 99.48 0.71 -15.15 16 27 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 28 H -0.26 -12.95 6.52 99.48 0.65 -12.30 16 29 H 0.05 1.22 5.97 -2.39 -0.01 1.20 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.08 6.66 -2.39 -0.02 1.06 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.10 6.33 -2.39 -0.02 1.09 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.14 2.96 3.99 -55.27 -0.22 2.74 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.14 4.27 7.80 -2.91 -0.02 4.25 16 39 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.04 1.94 5.18 -2.39 -0.01 1.92 16 42 H 0.02 0.66 8.08 -2.38 -0.02 0.64 16 43 H 0.35 18.34 5.49 -92.71 -0.51 17.83 16 44 H 0.25 16.58 8.31 -92.70 -0.77 15.81 16 Total: -1.00 -80.14 353.35 3.76 -76.38 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.26 Total: 22.10 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.60 Total: 11.01 kcal Atomic # 7 Polarization: -134.68 SS G_CDS: -3.88 Total: -138.56 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.04 Total: -23.33 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.90 Total: 52.95 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -80.14 3.76 -76.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715427984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.884 kcal (2) G-P(sol) polarization free energy of solvation -80.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds