Wall clock time and date at job start Tue Mar 31 2020 21:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.34777 * 119.99724 * 85.00158 * 4 2 1 6 6 O 1.21613 * 120.00252 * 359.97438 * 5 4 2 7 7 C 1.47382 * 119.99755 * 179.72668 * 5 4 2 8 8 C 1.47012 * 127.19117 * 180.27474 * 7 5 4 9 9 C 1.34182 * 105.95391 * 179.97438 * 8 7 5 10 10 O 1.34217 * 109.12459 * 359.97438 * 9 8 7 11 11 C 1.33654 * 110.90776 * 359.76463 * 10 9 8 12 12 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 13 13 O 1.21282 * 120.00412 * 120.00003 * 12 2 1 14 14 N 1.34780 * 120.00164 * 300.00176 * 12 2 1 15 15 C 1.46498 * 119.99936 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.46571 * 179.97438 * 15 14 12 17 17 O 1.42897 * 112.94519 * 53.41085 * 16 15 14 18 18 C 1.53948 * 113.74186 * 281.67185 * 16 15 14 19 19 N 1.47589 * 86.11609 * 222.04997 * 18 16 15 20 20 C 1.36930 * 134.49001 * 204.63894 * 19 18 16 21 21 H 1.08003 * 120.00043 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00258 * 0.02562 * 20 19 18 23 23 N 1.31617 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00237 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46823 * 89.99584 * 24 22 20 26 26 H 1.48497 * 109.47103 * 209.99539 * 24 22 20 27 27 H 1.48493 * 109.46835 * 329.99846 * 24 22 20 28 28 C 1.47582 * 91.01570 * 24.64153 * 19 18 16 29 29 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 33 33 H 1.07999 * 127.02542 * 359.92534 * 8 7 5 34 34 H 1.08002 * 125.44078 * 180.02562 * 9 8 7 35 35 H 1.07999 * 125.80581 * 180.25076 * 11 10 9 36 36 H 0.96998 * 119.99363 * 0.02562 * 14 12 2 37 37 H 1.09000 * 109.46971 * 299.99510 * 15 14 12 38 38 H 1.08992 * 109.47475 * 60.00307 * 15 14 12 39 39 H 0.96697 * 114.00318 * 309.66128 * 17 16 15 40 40 H 1.08993 * 113.76988 * 336.34876 * 18 16 15 41 41 H 1.09000 * 113.76684 * 107.75230 * 18 16 15 42 42 H 0.97006 * 120.00710 * 180.02562 * 23 22 20 43 43 H 1.08995 * 113.77178 * 221.05996 * 28 19 18 44 44 H 1.09001 * 113.76966 * 89.65526 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8574 1.1616 -2.4119 7 6 2.6440 -0.7115 -3.5590 8 6 2.8501 -0.1355 -4.8958 9 6 3.3113 -1.1363 -5.6615 10 8 3.4026 -2.2512 -4.9199 11 6 3.0152 -2.0203 -3.6618 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1947 -0.9408 3.6507 16 6 1.6853 -0.2191 4.8999 17 8 0.2673 -0.0426 4.9020 18 6 2.4721 1.0594 5.2413 19 7 2.3953 0.6114 6.6454 20 6 2.4472 1.2440 7.8587 21 1 2.3651 0.6709 8.7705 22 6 2.6052 2.6218 7.9169 23 7 2.7057 3.3202 6.8058 24 14 2.6751 3.4849 9.5721 25 1 4.0843 3.5530 10.0356 26 1 2.1316 4.8602 9.4366 27 1 1.8652 2.7276 10.5598 28 6 2.2404 -0.7923 6.2166 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 2.6670 0.8845 -5.1997 34 1 3.5687 -1.0571 -6.7074 35 1 2.9964 -2.7469 -2.8630 36 1 1.1488 0.5385 2.5435 37 1 1.8309 -1.9683 3.6506 38 1 3.2846 -0.9412 3.6509 39 1 -0.0821 0.3447 4.0877 40 1 3.4850 1.0724 4.8390 41 1 1.9224 1.9795 5.0431 42 1 2.8165 4.2831 6.8464 43 1 1.5059 -1.3505 6.7969 44 1 3.1854 -1.3231 6.1007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724453895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:31 Heat of formation + Delta-G solvation = -38.697233 kcal Electronic energy + Delta-G solvation = -28538.655384 eV Core-core repulsion = 24267.379039 eV Total energy + Delta-G solvation = -4271.276345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.92090 -40.57279 -39.41540 -38.59573 -35.26886 -35.00702 -34.19176 -33.33191 -32.05511 -31.40912 -29.81060 -28.49160 -26.23011 -25.14640 -24.96214 -23.39254 -21.93566 -21.82301 -20.60993 -20.41408 -19.45248 -19.09979 -17.66986 -16.91002 -16.74542 -16.53352 -16.27810 -15.85579 -15.67496 -15.36746 -15.05195 -14.82212 -14.65785 -14.07299 -13.97486 -13.80631 -13.61249 -13.29911 -13.26928 -12.86973 -12.76223 -12.69219 -12.61760 -12.30703 -11.95010 -11.79594 -11.10585 -10.95989 -10.78540 -10.48773 -10.36986 -10.21291 -10.15565 -9.83173 -9.58376 -9.46554 -9.33206 -9.20625 -9.05723 -8.85230 -6.93667 -5.80176 -3.12155 0.95696 1.69412 2.39450 2.45671 2.59527 3.04306 3.18684 3.38266 3.43019 3.45143 4.18395 4.26960 4.35819 4.40596 4.46924 4.66293 4.75164 4.86405 4.93956 5.09687 5.15622 5.21350 5.26621 5.30067 5.45614 5.52819 5.54218 5.66328 5.82253 5.87806 5.92744 6.01672 6.19667 6.30938 6.45448 6.50569 6.53460 6.96057 7.12224 7.16518 7.26936 7.46526 7.88944 7.92681 7.95815 8.07982 9.00650 9.67078 10.52306 11.37154 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.001984 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.504173 B =14107.593955 C =14479.346074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 H 0.119 0.881 4 N -0.709 5.709 5 C 0.591 3.409 6 O -0.534 6.534 7 C -0.236 4.236 8 C -0.164 4.164 9 C -0.041 4.041 10 O -0.174 6.174 11 C 0.026 3.974 12 C 0.513 3.487 13 O -0.541 6.541 14 N -0.715 5.715 15 C 0.103 3.897 16 C 0.063 3.937 17 O -0.525 6.525 18 C 0.144 3.856 19 N -0.602 5.602 20 C -0.219 4.219 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.136 3.864 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.407 0.593 33 H 0.161 0.839 34 H 0.210 0.790 35 H 0.213 0.787 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.361 0.639 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.254 0.746 43 H 0.056 0.944 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -10.806 -23.895 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.137 0.863 4 N -0.363 5.363 5 C 0.379 3.621 6 O -0.411 6.411 7 C -0.240 4.240 8 C -0.183 4.183 9 C -0.107 4.107 10 O -0.069 6.069 11 C -0.045 4.045 12 C 0.298 3.702 13 O -0.418 6.418 14 N -0.367 5.367 15 C -0.022 4.022 16 C 0.020 3.980 17 O -0.328 6.328 18 C 0.018 3.982 19 N -0.327 5.327 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.010 3.990 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.244 0.756 33 H 0.178 0.822 34 H 0.226 0.774 35 H 0.229 0.771 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.207 0.793 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.089 -10.908 -23.247 25.764 hybrid contribution -0.004 0.944 0.484 1.061 sum -2.093 -9.965 -22.763 24.936 Atomic orbital electron populations 1.22152 0.92444 1.03281 1.04004 1.20796 0.95911 0.98371 0.83235 0.86319 1.45555 1.67776 1.14618 1.08361 1.17226 0.77056 0.86042 0.81759 1.90807 1.50204 1.15253 1.84828 1.21467 1.12068 0.94664 0.95812 1.22796 1.03551 1.00987 0.91002 1.23983 1.05571 0.83318 0.97859 1.83810 1.66424 1.36771 1.19879 1.24546 0.97709 0.96804 0.85433 1.20467 0.80286 0.84676 0.84751 1.90688 1.38008 1.26482 1.86613 1.45862 1.53335 1.31995 1.05546 1.22114 1.00334 0.96618 0.83110 1.23781 0.82114 0.99153 0.92951 1.86633 1.19555 1.85080 1.41570 1.22909 0.95946 0.94854 0.84523 1.45652 1.85036 1.00328 1.01728 1.18989 1.43026 0.89856 0.82815 0.90096 1.24776 1.02269 0.96063 0.97357 1.69789 1.56039 1.06051 1.25138 0.86085 0.77643 0.78998 0.82833 1.21619 1.21605 1.20571 1.22550 0.96714 0.89899 0.89870 0.90516 0.90606 0.91624 0.75611 0.82183 0.77391 0.77064 0.76297 0.90897 0.90088 0.79284 0.94823 0.90318 0.93631 0.92615 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.38 37.16 0.35 -0.94 16 2 C 0.13 1.25 2.98 -69.08 -0.21 1.05 16 3 H 0.12 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.71 -6.97 4.94 -56.02 -0.28 -7.25 16 5 C 0.59 6.77 7.78 -12.54 -0.10 6.67 16 6 O -0.53 -7.86 16.65 5.27 0.09 -7.77 16 7 C -0.24 -2.23 6.31 -103.28 -0.65 -2.88 16 8 C -0.16 -1.37 11.01 -37.46 -0.41 -1.78 16 9 C -0.04 -0.25 12.03 29.30 0.35 0.10 16 10 O -0.17 -1.27 10.52 7.64 0.08 -1.18 16 11 C 0.03 0.18 11.61 30.08 0.35 0.53 16 12 C 0.51 6.08 7.22 -10.98 -0.08 6.00 16 13 O -0.54 -7.86 15.84 5.56 0.09 -7.77 16 14 N -0.72 -8.23 5.23 -60.30 -0.32 -8.54 16 15 C 0.10 1.43 5.28 -4.04 -0.02 1.41 16 16 C 0.06 1.09 1.52 -89.69 -0.14 0.95 16 17 O -0.52 -9.02 13.51 -35.23 -0.48 -9.50 16 18 C 0.14 3.19 6.92 -2.97 -0.02 3.17 16 19 N -0.60 -15.24 3.70 -177.77 -0.66 -15.89 16 20 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 21 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.08 11.38 55.49 0.63 -26.45 16 24 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.14 2.72 8.34 -2.97 -0.02 2.70 16 29 H 0.08 0.50 7.56 -51.93 -0.39 0.11 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.41 3.43 6.76 -40.82 -0.28 3.16 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.21 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.21 0.78 7.47 -52.49 -0.39 0.39 16 36 H 0.40 3.89 6.72 -40.82 -0.27 3.61 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 39 H 0.36 4.48 7.61 45.56 0.35 4.82 16 40 H 0.03 0.76 8.03 -51.93 -0.42 0.35 16 41 H 0.08 1.94 7.15 -51.93 -0.37 1.56 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -37.29 379.08 -6.10 -43.39 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.09 Total: 7.79 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -0.86 Total: 10.32 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.62 Total: -58.14 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.22 Total: -26.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.29 -6.10 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724453895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.693 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds