Wall clock time and date at job start Tue Mar 31 2020 21:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.34777 * 119.99724 * 85.00158 * 4 2 1 6 6 O 1.21613 * 120.00252 * 359.97438 * 5 4 2 7 7 C 1.47382 * 119.99755 * 179.72668 * 5 4 2 8 8 C 1.47012 * 127.19117 * 180.27474 * 7 5 4 9 9 C 1.34182 * 105.95391 * 179.97438 * 8 7 5 10 10 O 1.34217 * 109.12459 * 359.97438 * 9 8 7 11 11 C 1.33654 * 110.90776 * 359.76463 * 10 9 8 12 12 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 13 13 O 1.21282 * 120.00412 * 120.00003 * 12 2 1 14 14 N 1.34780 * 120.00164 * 300.00176 * 12 2 1 15 15 C 1.46498 * 119.99936 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.46571 * 179.97438 * 15 14 12 17 17 O 1.42897 * 112.94519 * 53.41085 * 16 15 14 18 18 C 1.53948 * 113.74186 * 281.67185 * 16 15 14 19 19 N 1.47589 * 86.11609 * 222.04997 * 18 16 15 20 20 C 1.36930 * 134.49001 * 204.63894 * 19 18 16 21 21 H 1.08003 * 120.00043 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00258 * 0.02562 * 20 19 18 23 23 N 1.31617 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00237 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46823 * 89.99584 * 24 22 20 26 26 H 1.48497 * 109.47103 * 209.99539 * 24 22 20 27 27 H 1.48493 * 109.46835 * 329.99846 * 24 22 20 28 28 C 1.47582 * 91.01570 * 24.64153 * 19 18 16 29 29 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 31 31 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 33 33 H 1.07999 * 127.02542 * 359.92534 * 8 7 5 34 34 H 1.08002 * 125.44078 * 180.02562 * 9 8 7 35 35 H 1.07999 * 125.80581 * 180.25076 * 11 10 9 36 36 H 0.96998 * 119.99363 * 0.02562 * 14 12 2 37 37 H 1.09000 * 109.46971 * 299.99510 * 15 14 12 38 38 H 1.08992 * 109.47475 * 60.00307 * 15 14 12 39 39 H 0.96697 * 114.00318 * 309.66128 * 17 16 15 40 40 H 1.08993 * 113.76988 * 336.34876 * 18 16 15 41 41 H 1.09000 * 113.76684 * 107.75230 * 18 16 15 42 42 H 0.97006 * 120.00710 * 180.02562 * 23 22 20 43 43 H 1.08995 * 113.77178 * 221.05996 * 28 19 18 44 44 H 1.09001 * 113.76966 * 89.65526 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8574 1.1616 -2.4119 7 6 2.6440 -0.7115 -3.5590 8 6 2.8501 -0.1355 -4.8958 9 6 3.3113 -1.1363 -5.6615 10 8 3.4026 -2.2512 -4.9199 11 6 3.0152 -2.0203 -3.6618 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1947 -0.9408 3.6507 16 6 1.6853 -0.2191 4.8999 17 8 0.2673 -0.0426 4.9020 18 6 2.4721 1.0594 5.2413 19 7 2.3953 0.6114 6.6454 20 6 2.4472 1.2440 7.8587 21 1 2.3651 0.6709 8.7705 22 6 2.6052 2.6218 7.9169 23 7 2.7057 3.3202 6.8058 24 14 2.6751 3.4849 9.5721 25 1 4.0843 3.5530 10.0356 26 1 2.1316 4.8602 9.4366 27 1 1.8652 2.7276 10.5598 28 6 2.2404 -0.7923 6.2166 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 2.6670 0.8845 -5.1997 34 1 3.5687 -1.0571 -6.7074 35 1 2.9964 -2.7469 -2.8630 36 1 1.1488 0.5385 2.5435 37 1 1.8309 -1.9683 3.6506 38 1 3.2846 -0.9412 3.6509 39 1 -0.0821 0.3447 4.0877 40 1 3.4850 1.0724 4.8390 41 1 1.9224 1.9795 5.0431 42 1 2.8165 4.2831 6.8464 43 1 1.5059 -1.3505 6.7969 44 1 3.1854 -1.3231 6.1007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724453895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:30 Heat of formation + Delta-G solvation = -70.056744 kcal Electronic energy + Delta-G solvation = -28540.015234 eV Core-core repulsion = 24267.379039 eV Total energy + Delta-G solvation = -4272.636196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.48097 -41.56914 -40.62830 -39.82853 -36.54499 -36.11774 -35.38688 -34.05704 -33.94365 -32.19797 -30.53790 -29.95374 -27.77795 -26.74195 -25.90839 -24.40273 -23.44851 -22.40833 -21.54333 -21.20855 -20.95777 -19.86909 -18.90533 -18.38981 -17.80475 -17.34108 -17.13664 -17.00796 -16.84215 -16.50310 -16.15678 -15.80895 -15.76521 -15.68953 -15.22707 -15.00931 -14.63302 -14.43729 -14.40425 -13.88766 -13.84485 -13.76113 -13.42129 -13.34023 -13.26351 -12.96323 -12.82970 -12.67601 -12.54594 -12.22740 -11.77940 -11.44229 -11.29441 -11.01925 -10.96390 -10.86479 -10.71807 -10.34282 -10.19306 -9.74751 -8.93593 -7.91852 -5.24185 0.32379 1.12668 1.42674 1.44893 1.46597 1.55269 1.62267 2.05899 2.25196 2.30953 2.46004 3.06427 3.27703 3.33808 3.43295 3.59637 3.65965 3.77687 3.89429 3.97551 4.06740 4.14136 4.38584 4.53609 4.63606 4.70096 4.74641 4.76287 4.79109 4.80105 4.96865 5.00652 5.17338 5.17683 5.20785 5.22959 5.33454 5.33779 5.49887 5.92351 5.98419 6.30834 6.39729 6.83981 6.91238 7.00821 7.07829 7.59115 8.52198 9.24729 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.001984 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.504173 B =14107.593955 C =14479.346074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.111 0.889 4 N -0.702 5.702 5 C 0.591 3.409 6 O -0.577 6.577 7 C -0.271 4.271 8 C -0.196 4.196 9 C -0.023 4.023 10 O -0.177 6.177 11 C 0.045 3.955 12 C 0.520 3.480 13 O -0.564 6.564 14 N -0.709 5.709 15 C 0.119 3.881 16 C 0.099 3.901 17 O -0.539 6.539 18 C 0.140 3.860 19 N -0.636 5.636 20 C -0.232 4.232 21 H 0.082 0.918 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.979 3.021 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.269 1.269 28 C 0.130 3.870 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.415 0.585 33 H 0.156 0.844 34 H 0.248 0.752 35 H 0.243 0.757 36 H 0.412 0.588 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.383 0.617 40 H 0.025 0.975 41 H 0.049 0.951 42 H 0.248 0.752 43 H 0.058 0.942 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 -12.734 -24.694 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.128 0.872 4 N -0.355 5.355 5 C 0.380 3.620 6 O -0.457 6.457 7 C -0.276 4.276 8 C -0.216 4.216 9 C -0.089 4.089 10 O -0.071 6.071 11 C -0.026 4.026 12 C 0.306 3.694 13 O -0.443 6.443 14 N -0.362 5.362 15 C -0.006 4.006 16 C 0.056 3.944 17 O -0.345 6.345 18 C 0.015 3.985 19 N -0.363 5.363 20 C -0.360 4.360 21 H 0.100 0.900 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.807 3.193 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.194 1.194 28 C 0.004 3.996 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.253 0.747 33 H 0.174 0.826 34 H 0.264 0.736 35 H 0.259 0.741 36 H 0.249 0.751 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.233 0.767 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.408 -12.885 -24.061 27.400 hybrid contribution 0.095 1.469 0.688 1.625 sum -2.313 -11.416 -23.372 26.114 Atomic orbital electron populations 1.22131 0.90660 1.03993 1.04498 1.20790 0.97214 0.97578 0.82454 0.87166 1.45514 1.67228 1.14882 1.07907 1.17536 0.76327 0.85611 0.82500 1.90774 1.52370 1.17062 1.85538 1.21505 1.14401 0.96051 0.95631 1.22962 1.05543 1.01720 0.91338 1.24641 1.03270 0.82061 0.98897 1.83852 1.66143 1.37146 1.20009 1.25045 0.95392 0.96267 0.85864 1.20648 0.79592 0.84201 0.84960 1.90680 1.39069 1.27653 1.86934 1.45732 1.53340 1.32195 1.04892 1.21784 0.99829 0.96812 0.82156 1.23124 0.81819 0.95815 0.93598 1.86583 1.19067 1.85231 1.43657 1.22871 0.95945 0.95986 0.83726 1.46053 1.85233 1.03065 1.01921 1.19369 1.41878 0.90435 0.84327 0.89997 1.25601 1.02927 0.96869 1.00692 1.69968 1.57527 1.05726 1.26917 0.85076 0.77587 0.77498 0.79162 1.21360 1.22013 1.19402 1.22803 0.97965 0.87856 0.90942 0.88750 0.91426 0.90745 0.74663 0.82625 0.73637 0.74112 0.75128 0.89359 0.90704 0.76741 0.95682 0.93298 0.94293 0.92336 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.38 71.98 0.68 -1.58 16 2 C 0.13 2.44 2.98 44.24 0.13 2.58 16 3 H 0.11 2.35 7.58 -2.39 -0.02 2.34 16 4 N -0.70 -13.26 4.94 -449.41 -2.22 -15.48 16 5 C 0.59 13.62 7.78 86.65 0.67 14.30 16 6 O -0.58 -17.62 16.65 -4.07 -0.07 -17.69 16 7 C -0.27 -5.02 6.31 -18.99 -0.12 -5.14 16 8 C -0.20 -3.22 11.01 23.65 0.26 -2.96 16 9 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 10 O -0.18 -2.17 10.52 4.43 0.05 -2.12 16 11 C 0.04 0.54 11.61 67.40 0.78 1.33 16 12 C 0.52 11.45 7.22 87.66 0.63 12.08 16 13 O -0.56 -15.35 15.84 -3.04 -0.05 -15.40 16 14 N -0.71 -14.96 5.23 -463.07 -2.42 -17.38 16 15 C 0.12 3.07 5.28 86.38 0.46 3.53 16 16 C 0.10 3.31 1.52 -10.13 -0.02 3.30 16 17 O -0.54 -17.51 13.51 -148.98 -2.01 -19.53 16 18 C 0.14 6.28 6.92 86.48 0.60 6.88 16 19 N -0.64 -32.29 3.70 -720.16 -2.66 -34.96 16 20 C -0.23 -13.10 10.70 84.03 0.90 -12.20 16 21 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.95 -57.13 11.38 21.65 0.25 -56.89 16 24 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.13 5.01 8.34 86.48 0.72 5.74 16 29 H 0.09 1.03 7.56 -2.39 -0.02 1.01 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.42 6.39 6.76 -92.71 -0.63 5.77 16 33 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.25 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.24 1.12 7.47 -2.91 -0.02 1.10 16 36 H 0.41 7.20 6.72 -92.71 -0.62 6.58 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 39 H 0.38 8.62 7.61 -74.06 -0.56 8.06 16 40 H 0.03 1.16 8.03 -2.39 -0.02 1.14 16 41 H 0.05 2.46 7.15 -2.39 -0.02 2.45 16 42 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 2.49 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -82.20 379.08 -0.89 -83.08 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.74 Total: 23.31 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 6.97 Total: 24.96 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -7.06 Total: -124.71 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -2.08 Total: -54.74 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -82.20 -0.89 -83.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724453895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.028 kcal (2) G-P(sol) polarization free energy of solvation -82.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds