Wall clock time and date at job start Tue Mar 31 2020 21:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47003 * 119.99860 * 2 1 3 5 5 N 1.46506 * 109.46809 * 174.99931 * 4 2 1 6 6 C 1.34774 * 120.00032 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99872 * 355.01201 * 6 5 4 8 8 C 1.50696 * 120.00389 * 175.00798 * 6 5 4 9 9 C 1.53001 * 115.55025 * 303.87631 * 8 6 5 10 10 F 1.39904 * 109.47338 * 65.55473 * 9 8 6 11 11 F 1.39902 * 109.47186 * 185.55607 * 9 8 6 12 12 F 1.39904 * 109.46760 * 305.55275 * 9 8 6 13 13 C 1.53000 * 117.49794 * 158.20188 * 8 6 5 14 14 C 1.52997 * 117.49751 * 89.54160 * 8 6 5 15 15 N 1.46897 * 109.47209 * 239.99688 * 2 1 3 16 16 C 1.46906 * 110.99671 * 84.99709 * 15 2 1 17 17 C 1.50698 * 109.47008 * 179.97438 * 16 15 2 18 18 O 1.21294 * 120.00180 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99982 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00233 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99956 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00000 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47337 * 90.00147 * 24 22 20 26 26 H 1.48503 * 109.47011 * 209.99895 * 24 22 20 27 27 H 1.48499 * 109.47245 * 329.99976 * 24 22 20 28 28 H 1.09001 * 109.47373 * 60.00165 * 1 2 3 29 29 H 1.09001 * 109.47577 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47326 * 300.00269 * 1 2 3 31 31 H 1.09000 * 109.47042 * 294.99698 * 4 2 1 32 32 H 1.08994 * 109.47023 * 55.00230 * 4 2 1 33 33 H 0.96994 * 120.00106 * 0.02562 * 5 4 2 34 34 H 1.08991 * 117.50169 * 0.02562 * 13 8 6 35 35 H 1.09009 * 117.49699 * 145.02465 * 13 8 6 36 36 H 1.09004 * 117.50320 * 214.98182 * 14 8 6 37 37 H 1.09003 * 117.50257 * 0.02562 * 14 8 6 38 38 H 1.00895 * 111.00117 * 321.05000 * 15 2 1 39 39 H 1.09002 * 109.46876 * 60.00532 * 16 15 2 40 40 H 1.08997 * 109.47809 * 300.00372 * 16 15 2 41 41 H 0.97002 * 120.00239 * 359.97438 * 19 17 16 42 42 H 0.97000 * 120.00035 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5810 -1.8019 3.1814 8 6 5.6614 -1.6369 2.0795 9 6 6.1283 -2.4123 0.8460 10 9 5.8514 -1.6675 -0.3055 11 9 7.5057 -2.6416 0.9330 12 9 5.4548 -3.6369 0.7825 13 6 6.4462 -1.8355 3.3778 14 6 6.5719 -0.5230 2.6001 15 7 2.0196 -0.6925 -1.1994 16 6 2.0823 0.2226 -2.3469 17 6 2.5884 -0.5215 -3.5557 18 8 2.8688 -1.6985 -3.4699 19 7 2.7295 0.1208 -4.7321 20 6 3.1894 -0.5563 -5.8319 21 1 3.4382 -1.6045 -5.7558 22 6 3.3343 0.1057 -7.0450 23 7 3.0310 1.3810 -7.1378 24 14 3.9602 -0.8170 -8.5437 25 1 2.8109 -1.3991 -9.2823 26 1 4.6951 0.1203 -9.4307 27 1 4.8722 -1.9056 -8.1096 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2952 33 1 3.9824 -0.4622 0.4319 34 1 5.8861 -1.8157 4.3125 35 1 7.2955 -2.5184 3.3530 36 1 7.5038 -0.3429 2.0642 37 1 6.0945 0.3606 3.0238 38 1 1.4495 -1.4979 -1.4100 39 1 2.7588 1.0462 -2.1182 40 1 1.0870 0.6163 -2.5526 41 1 2.5049 1.0619 -4.8009 42 1 3.1325 1.8433 -7.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731622753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:39 Heat of formation + Delta-G solvation = -200.115716 kcal Electronic energy + Delta-G solvation = -30184.637310 eV Core-core repulsion = 25364.504593 eV Total energy + Delta-G solvation = -4820.132716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.16077 -47.72750 -47.58005 -40.26213 -38.51939 -37.36831 -36.55613 -34.23341 -33.78137 -31.32066 -30.76479 -27.85916 -26.54544 -26.17359 -24.01394 -23.17021 -22.98529 -21.09987 -20.32194 -19.32922 -18.73981 -18.34824 -18.25239 -17.91479 -16.58722 -16.29514 -15.96788 -15.61037 -15.12798 -14.97316 -14.63816 -14.54551 -14.43569 -14.32368 -14.07691 -14.02021 -13.88053 -13.75639 -13.69129 -13.35626 -13.15261 -12.65273 -12.63373 -12.45322 -12.20282 -12.05225 -11.79198 -11.59150 -11.44886 -11.20456 -11.18785 -11.06106 -11.02821 -10.39984 -10.22710 -10.17231 -9.51831 -9.14877 -8.52018 -8.13694 -7.97290 -6.43016 -3.83621 2.02533 2.57086 2.80462 3.03941 3.17121 3.26021 3.32265 3.58616 3.79674 3.88997 4.02205 4.04853 4.23919 4.31215 4.49215 4.56900 4.70245 4.91683 5.05435 5.08133 5.11052 5.17411 5.24902 5.36538 5.41733 5.55892 5.57979 5.63414 5.68969 5.83262 5.95358 5.99949 6.23768 6.30921 7.10030 7.38859 7.54341 7.55394 7.99897 8.05054 8.59863 9.17016 9.52893 10.04356 10.74700 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.003198 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.158488 B = 8753.896170 C =10352.962705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.133 3.867 5 N -0.700 5.700 6 C 0.557 3.443 7 O -0.530 6.530 8 C -0.241 4.241 9 C 0.496 3.504 10 F -0.163 7.163 11 F -0.179 7.179 12 F -0.172 7.172 13 C -0.116 4.116 14 C -0.128 4.128 15 N -0.664 5.664 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.414 0.586 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.354 0.646 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 1.112 20.026 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.009 3.991 5 N -0.352 5.352 6 C 0.340 3.660 7 O -0.407 6.407 8 C -0.246 4.246 9 C 0.442 3.558 10 F -0.144 7.144 11 F -0.160 7.160 12 F -0.153 7.153 13 C -0.153 4.153 14 C -0.165 4.165 15 N -0.297 5.297 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.174 0.826 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.264 0.224 20.707 20.963 hybrid contribution -0.572 0.332 -1.884 1.996 sum 2.692 0.555 18.823 19.023 Atomic orbital electron populations 1.22431 0.96054 1.02800 1.02685 1.21854 0.93490 0.98326 0.90683 0.89670 1.21428 0.79283 1.01294 0.97093 1.45805 1.08177 1.58035 1.23143 1.18638 0.85668 0.78174 0.83504 1.90708 1.68568 1.50700 1.30755 1.22618 0.95326 1.09473 0.97198 1.19026 0.74890 0.78140 0.83784 1.93290 1.93165 1.76070 1.51882 1.93168 1.31662 1.94863 1.96313 1.93237 1.80023 1.45385 1.96628 1.23202 0.99990 0.99211 0.92917 1.23243 0.99232 0.92933 1.01109 1.60171 1.57697 1.09220 1.02577 1.21716 1.00026 0.95601 0.90898 1.19794 0.85275 0.88279 0.84178 1.90546 1.55118 1.16196 1.84541 1.41855 1.57800 1.12424 1.07950 1.19701 1.39932 0.96431 0.86749 0.87937 1.25251 0.97654 0.95762 0.99235 1.69609 1.48772 1.08836 1.27154 0.85869 0.78899 0.79004 0.80605 1.20441 1.20917 1.19376 0.91815 0.91922 0.91823 0.90966 0.91220 0.74844 0.85874 0.86494 0.86350 0.86445 0.82568 0.89665 0.93667 0.77519 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.16 37.16 0.34 -1.31 16 2 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 3 H 0.09 0.84 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.48 5.38 -4.04 -0.02 1.46 16 5 N -0.70 -8.62 5.28 -60.29 -0.32 -8.93 16 6 C 0.56 7.26 6.96 -10.99 -0.08 7.18 16 7 O -0.53 -8.18 16.49 5.55 0.09 -8.09 16 8 C -0.24 -2.63 2.07 -155.66 -0.32 -2.95 16 9 C 0.50 6.47 3.06 37.16 0.11 6.58 16 10 F -0.16 -2.45 15.95 2.25 0.04 -2.41 16 11 F -0.18 -2.12 15.90 2.25 0.04 -2.09 16 12 F -0.17 -2.59 17.12 2.25 0.04 -2.55 16 13 C -0.12 -0.94 9.47 -26.69 -0.25 -1.19 16 14 C -0.13 -0.95 9.70 -26.69 -0.26 -1.21 16 15 N -0.66 -9.66 5.32 -107.99 -0.57 -10.23 16 16 C 0.05 0.81 5.96 -4.97 -0.03 0.78 16 17 C 0.44 10.03 7.82 -10.99 -0.09 9.94 16 18 O -0.58 -15.45 15.78 5.55 0.09 -15.37 16 19 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.41 5.25 6.86 -40.82 -0.28 4.97 16 34 H 0.12 0.99 7.84 -51.93 -0.41 0.58 16 35 H 0.12 0.80 7.62 -51.92 -0.40 0.41 16 36 H 0.12 0.75 7.95 -51.93 -0.41 0.33 16 37 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.35 5.57 8.17 -39.29 -0.32 5.25 16 39 H 0.09 1.25 8.06 -51.93 -0.42 0.84 16 40 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 41 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -32.74 371.78 -5.74 -38.48 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -5.36 Total: 15.31 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -1.02 Total: 11.91 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.23 Total: -56.78 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.18 Total: -23.45 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.74 -5.74 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731622753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.638 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds