Wall clock time and date at job start Tue Mar 31 2020 21:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47003 * 119.99860 * 2 1 3 5 5 N 1.46506 * 109.46809 * 174.99931 * 4 2 1 6 6 C 1.34774 * 120.00032 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99872 * 355.01201 * 6 5 4 8 8 C 1.50696 * 120.00389 * 175.00798 * 6 5 4 9 9 C 1.53001 * 115.55025 * 303.87631 * 8 6 5 10 10 F 1.39904 * 109.47338 * 65.55473 * 9 8 6 11 11 F 1.39902 * 109.47186 * 185.55607 * 9 8 6 12 12 F 1.39904 * 109.46760 * 305.55275 * 9 8 6 13 13 C 1.53000 * 117.49794 * 158.20188 * 8 6 5 14 14 C 1.52997 * 117.49751 * 89.54160 * 8 6 5 15 15 N 1.46897 * 109.47209 * 239.99688 * 2 1 3 16 16 C 1.46906 * 110.99671 * 84.99709 * 15 2 1 17 17 C 1.50698 * 109.47008 * 179.97438 * 16 15 2 18 18 O 1.21294 * 120.00180 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99982 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00233 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99956 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00000 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47337 * 90.00147 * 24 22 20 26 26 H 1.48503 * 109.47011 * 209.99895 * 24 22 20 27 27 H 1.48499 * 109.47245 * 329.99976 * 24 22 20 28 28 H 1.09001 * 109.47373 * 60.00165 * 1 2 3 29 29 H 1.09001 * 109.47577 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47326 * 300.00269 * 1 2 3 31 31 H 1.09000 * 109.47042 * 294.99698 * 4 2 1 32 32 H 1.08994 * 109.47023 * 55.00230 * 4 2 1 33 33 H 0.96994 * 120.00106 * 0.02562 * 5 4 2 34 34 H 1.08991 * 117.50169 * 0.02562 * 13 8 6 35 35 H 1.09009 * 117.49699 * 145.02465 * 13 8 6 36 36 H 1.09004 * 117.50320 * 214.98182 * 14 8 6 37 37 H 1.09003 * 117.50257 * 0.02562 * 14 8 6 38 38 H 1.00895 * 111.00117 * 321.05000 * 15 2 1 39 39 H 1.09002 * 109.46876 * 60.00532 * 16 15 2 40 40 H 1.08997 * 109.47809 * 300.00372 * 16 15 2 41 41 H 0.97002 * 120.00239 * 359.97438 * 19 17 16 42 42 H 0.97000 * 120.00035 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5810 -1.8019 3.1814 8 6 5.6614 -1.6369 2.0795 9 6 6.1283 -2.4123 0.8460 10 9 5.8514 -1.6675 -0.3055 11 9 7.5057 -2.6416 0.9330 12 9 5.4548 -3.6369 0.7825 13 6 6.4462 -1.8355 3.3778 14 6 6.5719 -0.5230 2.6001 15 7 2.0196 -0.6925 -1.1994 16 6 2.0823 0.2226 -2.3469 17 6 2.5884 -0.5215 -3.5557 18 8 2.8688 -1.6985 -3.4699 19 7 2.7295 0.1208 -4.7321 20 6 3.1894 -0.5563 -5.8319 21 1 3.4382 -1.6045 -5.7558 22 6 3.3343 0.1057 -7.0450 23 7 3.0310 1.3810 -7.1378 24 14 3.9602 -0.8170 -8.5437 25 1 2.8109 -1.3991 -9.2823 26 1 4.6951 0.1203 -9.4307 27 1 4.8722 -1.9056 -8.1096 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2952 33 1 3.9824 -0.4622 0.4319 34 1 5.8861 -1.8157 4.3125 35 1 7.2955 -2.5184 3.3530 36 1 7.5038 -0.3429 2.0642 37 1 6.0945 0.3606 3.0238 38 1 1.4495 -1.4979 -1.4100 39 1 2.7588 1.0462 -2.1182 40 1 1.0870 0.6163 -2.5526 41 1 2.5049 1.0619 -4.8009 42 1 3.1325 1.8433 -7.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731622753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:39 Heat of formation + Delta-G solvation = -224.767563 kcal Electronic energy + Delta-G solvation = -30185.706294 eV Core-core repulsion = 25364.504593 eV Total energy + Delta-G solvation = -4821.201700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.21771 -48.76144 -48.70299 -41.20840 -40.18144 -38.44544 -37.50398 -35.96862 -35.10832 -33.26503 -31.93985 -28.72663 -27.96145 -27.28609 -25.69343 -24.07680 -23.63384 -22.04412 -21.29275 -21.08745 -19.92425 -19.73950 -19.41530 -19.22206 -17.87415 -17.28134 -17.20498 -16.73968 -16.55855 -16.29408 -15.92478 -15.85394 -15.59781 -15.43044 -15.37149 -15.13569 -14.99246 -14.90317 -14.85227 -14.63528 -14.39235 -13.76630 -13.66748 -13.44279 -13.42418 -13.34469 -13.08416 -12.79581 -12.62260 -12.55616 -12.40537 -12.12827 -11.97475 -11.94852 -11.86592 -11.49553 -11.16414 -10.32713 -10.13265 -9.99516 -9.34122 -8.46081 -5.94017 1.07059 1.37472 1.41497 1.53809 1.67539 1.93463 2.08263 2.22098 2.29275 2.66213 2.85151 2.91957 3.21329 3.21743 3.41454 3.54199 3.63979 3.75264 3.82095 4.09694 4.31553 4.35170 4.41690 4.49391 4.55411 4.61698 4.63904 4.73584 4.79948 4.88566 4.98958 5.00576 5.24570 5.36792 5.41908 5.89468 6.10542 6.35530 6.40113 6.61976 7.01663 7.14616 7.58822 8.14911 8.71244 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.003198 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.158488 B = 8753.896170 C =10352.962705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.103 0.897 4 C 0.133 3.867 5 N -0.700 5.700 6 C 0.555 3.445 7 O -0.560 6.560 8 C -0.264 4.264 9 C 0.493 3.507 10 F -0.179 7.179 11 F -0.172 7.172 12 F -0.190 7.190 13 C -0.107 4.107 14 C -0.104 4.104 15 N -0.677 5.677 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.989 3.011 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.413 0.587 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.345 0.655 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.397 0.603 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.070 2.619 20.874 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.035 4.035 3 H 0.121 0.879 4 C 0.009 3.991 5 N -0.350 5.350 6 C 0.339 3.661 7 O -0.439 6.439 8 C -0.268 4.268 9 C 0.438 3.562 10 F -0.160 7.160 11 F -0.153 7.153 12 F -0.171 7.171 13 C -0.144 4.144 14 C -0.141 4.141 15 N -0.309 5.309 16 C -0.065 4.065 17 C 0.224 3.776 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.813 3.187 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.250 0.750 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.230 0.770 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.485 1.771 21.562 21.913 hybrid contribution -0.639 -0.165 -2.091 2.192 sum 2.846 1.605 19.471 19.743 Atomic orbital electron populations 1.22373 0.94563 1.02833 1.03660 1.21894 0.94589 0.98519 0.88475 0.87927 1.21503 0.78729 1.00876 0.97992 1.45895 1.08661 1.57639 1.22804 1.18945 0.86534 0.77542 0.83079 1.90685 1.69404 1.51964 1.31851 1.22557 0.94530 1.12287 0.97458 1.19345 0.75083 0.77630 0.84122 1.93253 1.93332 1.76335 1.53104 1.93172 1.31033 1.94819 1.96277 1.93196 1.80497 1.46680 1.96741 1.23362 0.99478 0.99985 0.91589 1.23474 0.98553 0.92706 0.99376 1.60142 1.58567 1.09157 1.03083 1.21563 1.01337 0.95207 0.88398 1.20964 0.83333 0.88029 0.85232 1.90518 1.56493 1.18450 1.85443 1.41912 1.58421 1.12586 1.08169 1.19623 1.42091 0.95842 0.88636 0.90615 1.25968 0.97304 0.96590 1.01228 1.69660 1.48763 1.09552 1.28061 0.84990 0.78432 0.77875 0.77430 1.19691 1.19472 1.20015 0.91915 0.92441 0.89687 0.89275 0.92681 0.75025 0.85713 0.85215 0.84893 0.84845 0.83616 0.87400 0.91249 0.76952 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.16 71.98 0.66 -2.15 16 2 C 0.08 1.45 2.75 44.92 0.12 1.58 16 3 H 0.10 1.68 7.80 -2.39 -0.02 1.66 16 4 C 0.13 2.79 5.38 86.38 0.46 3.26 16 5 N -0.70 -16.67 5.28 -463.05 -2.44 -19.12 16 6 C 0.55 14.12 6.96 87.66 0.61 14.73 16 7 O -0.56 -17.04 16.49 -3.04 -0.05 -17.09 16 8 C -0.26 -5.48 2.07 -52.93 -0.11 -5.59 16 9 C 0.49 12.76 3.06 71.98 0.22 12.98 16 10 F -0.18 -5.43 15.95 44.97 0.72 -4.71 16 11 F -0.17 -3.94 15.90 44.97 0.72 -3.23 16 12 F -0.19 -5.88 17.12 44.97 0.77 -5.11 16 13 C -0.11 -1.55 9.47 30.62 0.29 -1.26 16 14 C -0.10 -1.29 9.70 30.62 0.30 -1.00 16 15 N -0.68 -19.09 5.32 -495.57 -2.63 -21.73 16 16 C 0.07 2.08 5.96 85.56 0.51 2.59 16 17 C 0.44 20.10 7.82 87.66 0.69 20.79 16 18 O -0.62 -34.12 15.78 -3.07 -0.05 -34.16 16 19 N -0.57 -28.78 5.29 -306.99 -1.62 -30.40 16 20 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 24 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 H 0.06 1.04 7.45 -2.39 -0.02 1.03 16 29 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 30 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.41 10.14 6.86 -92.71 -0.64 9.50 16 34 H 0.12 1.80 7.84 -2.39 -0.02 1.78 16 35 H 0.13 1.52 7.62 -2.38 -0.02 1.50 16 36 H 0.13 1.29 7.95 -2.39 -0.02 1.27 16 37 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.34 10.85 8.17 -89.70 -0.73 10.12 16 39 H 0.11 2.91 8.06 -2.39 -0.02 2.89 16 40 H 0.07 1.86 7.44 -2.39 -0.02 1.84 16 41 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 42 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -72.38 371.78 1.74 -70.64 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -1.00 Total: 40.85 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: 5.03 Total: 27.83 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -6.42 Total: -120.03 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.10 Total: -51.25 kcal Atomic # 9 Polarization: -15.25 SS G_CDS: 2.20 Total: -13.05 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.38 1.74 -70.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731622753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.132 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds