Wall clock time and date at job start Tue Mar 31 2020 20:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52468 * 2 1 4 4 C 1.53049 * 109.49330 * 239.92463 * 2 1 3 5 5 C 1.53039 * 109.53712 * 301.41030 * 4 2 1 6 6 C 1.53198 * 109.31496 * 298.63873 * 5 4 2 7 7 N 1.46926 * 108.77516 * 54.63433 * 6 5 4 8 8 C 1.34773 * 120.62753 * 126.41093 * 7 6 5 9 9 O 1.21553 * 119.99695 * 186.43034 * 8 7 6 10 10 C 1.47844 * 120.00235 * 6.43817 * 8 7 6 11 11 C 1.39562 * 120.55153 * 38.20897 * 10 8 7 12 12 N 1.31660 * 120.59153 * 179.75253 * 11 10 8 13 13 C 1.31951 * 121.89637 * 0.53807 * 12 11 10 14 14 C 1.38426 * 121.06096 * 359.72541 * 13 12 11 15 15 Cl 1.73595 * 120.36122 * 179.97438 * 14 13 12 16 16 C 1.38517 * 119.27831 * 359.97438 * 14 13 12 17 17 C 1.46921 * 118.73928 * 306.39373 * 7 6 5 18 18 H 1.09004 * 109.58545 * 293.68167 * 17 7 6 19 19 C 1.52999 * 109.58972 * 173.39748 * 17 7 6 20 20 N 1.46496 * 109.47247 * 69.49255 * 19 17 7 21 21 C 1.36933 * 120.00405 * 175.33126 * 20 19 17 22 22 H 1.08004 * 119.99592 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00262 * 180.27351 * 21 20 19 24 24 N 1.31627 * 119.99667 * 179.72676 * 23 21 20 25 25 Si 1.86797 * 119.99918 * 359.72728 * 23 21 20 26 26 H 1.48495 * 109.46799 * 89.99991 * 25 23 21 27 27 H 1.48500 * 109.47116 * 209.99457 * 25 23 21 28 28 H 1.48492 * 109.47133 * 329.99747 * 25 23 21 29 29 H 1.08995 * 109.46815 * 299.91564 * 1 2 3 30 30 H 1.08998 * 109.46873 * 59.91854 * 1 2 3 31 31 H 1.08996 * 109.47191 * 179.91508 * 1 2 3 32 32 H 1.09001 * 109.45632 * 181.39847 * 4 2 1 33 33 H 1.08998 * 109.46041 * 61.43414 * 4 2 1 34 34 H 1.08998 * 109.49577 * 178.68615 * 5 4 2 35 35 H 1.08998 * 109.52089 * 58.60623 * 5 4 2 36 36 H 1.08998 * 109.58234 * 294.84496 * 6 5 4 37 37 H 1.09004 * 109.58420 * 174.42126 * 6 5 4 38 38 H 1.07997 * 119.70280 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.47149 * 179.75100 * 13 12 11 40 40 H 1.07997 * 120.86264 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.46646 * 309.49309 * 19 17 7 42 42 H 1.08998 * 109.47579 * 189.49522 * 19 17 7 43 43 H 0.97001 * 120.00037 * 355.32769 * 20 19 17 44 44 H 0.97005 * 119.99502 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2485 5 6 1.5030 -2.1557 -1.2662 6 6 2.0140 -2.9041 -0.0310 7 7 1.6516 -2.1383 1.1694 8 6 0.9748 -2.7222 2.1780 9 8 0.5788 -2.0527 3.1120 10 6 0.7141 -4.1772 2.1485 11 6 1.6802 -5.0614 1.6660 12 7 1.4508 -6.3576 1.6439 13 6 0.3090 -6.8708 2.0613 14 6 -0.7020 -6.0610 2.5493 15 17 -2.1972 -6.7555 3.0931 16 6 -0.5076 -4.6904 2.5991 17 6 2.0413 -0.7240 1.2495 18 1 3.1274 -0.6466 1.3004 19 6 1.4230 -0.0914 2.4978 20 7 2.0674 -0.6401 3.6936 21 6 1.7440 -0.1512 4.9311 22 1 1.0135 0.6387 5.0256 23 6 2.3587 -0.6673 6.0637 24 7 2.0517 -0.1935 7.2527 25 14 3.6216 -2.0339 5.9002 26 1 4.9738 -1.4416 5.7394 27 1 3.5943 -2.8815 7.1192 28 1 3.3006 -2.8649 4.7121 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1305 -0.7444 -1.2354 33 1 1.6987 -0.1957 -2.1390 34 1 1.8480 -2.6627 -2.1673 35 1 0.4132 -2.1358 -1.2545 36 1 3.0979 -3.0043 -0.0871 37 1 1.5553 -3.8919 0.0134 38 1 2.6258 -4.6791 1.3109 39 1 0.1611 -7.9399 2.0219 40 1 -1.2789 -4.0348 2.9754 41 1 0.3559 -0.3121 2.5264 42 1 1.5700 0.9883 2.4689 43 1 2.7231 -1.3498 3.6087 44 1 2.4816 -0.5539 8.0441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732547342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:02 Heat of formation + Delta-G solvation = 56.777630 kcal Electronic energy + Delta-G solvation = -28537.000780 eV Core-core repulsion = 24710.573701 eV Total energy + Delta-G solvation = -3826.427080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.13529 -39.84351 -37.47493 -36.86047 -34.91017 -33.63086 -32.60578 -32.17103 -31.16121 -30.55725 -27.40577 -26.40804 -24.92152 -24.09479 -23.73845 -22.44371 -21.31278 -20.34945 -18.78492 -17.86585 -17.28002 -16.95063 -16.73347 -15.65587 -15.41028 -15.36658 -15.02755 -14.31808 -14.22628 -14.11734 -13.93608 -13.72872 -13.40614 -13.12948 -12.94463 -12.74307 -12.65687 -12.44824 -12.27810 -12.17948 -11.70567 -11.53387 -11.45206 -11.27480 -11.07414 -10.81523 -10.74498 -10.43751 -10.30287 -10.09899 -9.96567 -9.93772 -9.45626 -9.14306 -8.86238 -8.56443 -8.30939 -6.89202 -5.62294 -2.88025 0.47924 0.83877 1.75695 2.95299 3.06465 3.43736 3.46061 3.51170 3.57083 4.09649 4.41155 4.46662 4.58333 4.65682 4.71735 4.73793 4.76239 4.91078 4.99784 5.09914 5.15987 5.27047 5.40042 5.58187 5.59544 5.61820 5.68886 5.69790 5.71738 5.78642 5.81297 5.84459 5.96038 6.06798 6.14475 6.17518 6.20614 6.41800 6.48743 6.75455 7.10908 7.50570 7.62734 8.13374 8.53500 8.58138 9.36192 10.09371 10.29233 11.57270 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008083 B = 0.005864 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.303785 B = 4773.822923 C = 6915.802195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.099 3.901 7 N -0.608 5.608 8 C 0.515 3.485 9 O -0.430 6.430 10 C -0.149 4.149 11 C 0.123 3.877 12 N -0.471 5.471 13 C 0.120 3.880 14 C -0.093 4.093 15 Cl -0.051 7.051 16 C -0.019 4.019 17 C 0.144 3.856 18 H 0.071 0.929 19 C 0.162 3.838 20 N -0.723 5.723 21 C -0.210 4.210 22 H 0.087 0.913 23 C -0.003 4.003 24 N -0.940 5.940 25 Si 0.882 3.118 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.283 1.283 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.355 0.645 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -10.038 -20.795 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.024 4.024 7 N -0.345 5.345 8 C 0.299 3.701 9 O -0.298 6.298 10 C -0.155 4.155 11 C -0.035 4.035 12 N -0.179 5.179 13 C -0.038 4.038 14 C -0.122 4.122 15 Cl -0.022 7.022 16 C -0.046 4.046 17 C 0.041 3.959 18 H 0.089 0.911 19 C 0.035 3.965 20 N -0.367 5.367 21 C -0.340 4.340 22 H 0.105 0.895 23 C -0.197 4.197 24 N -0.590 5.590 25 Si 0.714 3.286 26 H -0.215 1.215 27 H -0.221 1.221 28 H -0.209 1.209 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.185 0.815 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.187 0.813 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.321 -10.124 -20.310 22.935 hybrid contribution 0.250 -0.718 0.402 0.859 sum -3.071 -10.841 -19.908 22.876 Atomic orbital electron populations 1.21863 0.94728 1.02003 1.01668 1.21458 0.96846 0.99494 0.94075 0.89946 1.21541 1.00471 0.95334 0.97713 1.21954 1.01758 0.96347 0.97319 1.21991 1.00081 0.95458 0.84863 1.47709 1.58000 1.11173 1.17668 1.17970 0.82613 0.85942 0.83534 1.91244 1.45138 1.61286 1.32160 1.21274 0.95560 0.96619 1.02066 1.23281 0.98834 0.88161 0.93203 1.67840 1.20193 1.14133 1.15770 1.22893 0.87268 1.00563 0.93063 1.21975 0.90949 0.94264 1.04972 1.98388 1.31365 1.84127 1.88369 1.21624 0.96880 0.93338 0.92789 1.21616 0.98812 0.79176 0.96278 0.91105 1.20996 0.97742 0.94291 0.83499 1.42665 1.48054 1.43200 1.02747 1.19002 1.18392 1.14389 0.82216 0.89477 1.24570 1.00397 0.99514 0.95202 1.69699 1.46626 1.45613 0.97030 0.86557 0.82266 0.83237 0.76524 1.21525 1.22058 1.20915 0.91780 0.93254 0.92561 0.91824 0.91780 0.91091 0.91100 0.91399 0.89794 0.81468 0.81612 0.82786 0.92681 0.95699 0.81268 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.22 37.16 0.31 -1.37 16 2 C -0.10 -1.11 2.80 -90.49 -0.25 -1.37 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -0.99 5.43 -26.69 -0.14 -1.14 16 5 C -0.14 -1.14 5.74 -26.61 -0.15 -1.29 16 6 C 0.10 0.99 4.84 -3.71 -0.02 0.97 16 7 N -0.61 -8.45 2.41 -166.32 -0.40 -8.85 16 8 C 0.52 8.77 6.75 -12.33 -0.08 8.68 16 9 O -0.43 -9.40 10.75 5.32 0.06 -9.35 16 10 C -0.15 -2.20 5.19 -104.83 -0.54 -2.74 16 11 C 0.12 1.59 8.56 -17.13 -0.15 1.44 16 12 N -0.47 -5.94 10.34 -12.88 -0.13 -6.07 16 13 C 0.12 1.35 10.97 -17.43 -0.19 1.16 16 14 C -0.09 -1.12 6.34 -39.41 -0.25 -1.37 16 15 Cl -0.05 -0.56 28.98 -51.86 -1.50 -2.06 16 16 C -0.02 -0.27 9.59 -38.83 -0.37 -0.64 16 17 C 0.14 2.12 2.63 -67.60 -0.18 1.94 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 19 C 0.16 3.17 4.05 -4.04 -0.02 3.16 16 20 N -0.72 -17.73 3.05 -59.91 -0.18 -17.92 16 21 C -0.21 -6.17 10.19 -15.06 -0.15 -6.33 16 22 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 23 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 24 N -0.94 -30.81 13.97 55.49 0.78 -30.03 16 25 Si 0.88 23.59 27.73 -169.99 -4.71 18.88 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.29 -8.01 7.11 56.52 0.40 -7.61 16 28 H -0.28 -7.25 6.52 56.52 0.37 -6.89 16 29 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.65 6.33 -51.93 -0.33 0.32 16 36 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.08 0.80 4.69 -51.93 -0.24 0.55 16 38 H 0.17 1.87 6.41 -52.49 -0.34 1.54 16 39 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.15 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.06 1.17 5.04 -51.93 -0.26 0.91 16 42 H 0.03 0.50 8.13 -51.93 -0.42 0.08 16 43 H 0.35 8.71 4.96 -40.82 -0.20 8.51 16 44 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -34.78 352.28 -8.93 -43.71 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.84 Total: 5.46 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.29 Total: 0.93 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.06 Total: -62.87 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.06 Total: -9.35 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.71 Total: 18.88 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.78 -8.93 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732547342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.483 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds