Wall clock time and date at job start Tue Mar 31 2020 20:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52468 * 2 1 4 4 C 1.53049 * 109.49330 * 239.92463 * 2 1 3 5 5 C 1.53039 * 109.53712 * 301.41030 * 4 2 1 6 6 C 1.53198 * 109.31496 * 298.63873 * 5 4 2 7 7 N 1.46926 * 108.77516 * 54.63433 * 6 5 4 8 8 C 1.34773 * 120.62753 * 126.41093 * 7 6 5 9 9 O 1.21553 * 119.99695 * 186.43034 * 8 7 6 10 10 C 1.47844 * 120.00235 * 6.43817 * 8 7 6 11 11 C 1.39562 * 120.55153 * 38.20897 * 10 8 7 12 12 N 1.31660 * 120.59153 * 179.75253 * 11 10 8 13 13 C 1.31951 * 121.89637 * 0.53807 * 12 11 10 14 14 C 1.38426 * 121.06096 * 359.72541 * 13 12 11 15 15 Cl 1.73595 * 120.36122 * 179.97438 * 14 13 12 16 16 C 1.38517 * 119.27831 * 359.97438 * 14 13 12 17 17 C 1.46921 * 118.73928 * 306.39373 * 7 6 5 18 18 H 1.09004 * 109.58545 * 293.68167 * 17 7 6 19 19 C 1.52999 * 109.58972 * 173.39748 * 17 7 6 20 20 N 1.46496 * 109.47247 * 69.49255 * 19 17 7 21 21 C 1.36933 * 120.00405 * 175.33126 * 20 19 17 22 22 H 1.08004 * 119.99592 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00262 * 180.27351 * 21 20 19 24 24 N 1.31627 * 119.99667 * 179.72676 * 23 21 20 25 25 Si 1.86797 * 119.99918 * 359.72728 * 23 21 20 26 26 H 1.48495 * 109.46799 * 89.99991 * 25 23 21 27 27 H 1.48500 * 109.47116 * 209.99457 * 25 23 21 28 28 H 1.48492 * 109.47133 * 329.99747 * 25 23 21 29 29 H 1.08995 * 109.46815 * 299.91564 * 1 2 3 30 30 H 1.08998 * 109.46873 * 59.91854 * 1 2 3 31 31 H 1.08996 * 109.47191 * 179.91508 * 1 2 3 32 32 H 1.09001 * 109.45632 * 181.39847 * 4 2 1 33 33 H 1.08998 * 109.46041 * 61.43414 * 4 2 1 34 34 H 1.08998 * 109.49577 * 178.68615 * 5 4 2 35 35 H 1.08998 * 109.52089 * 58.60623 * 5 4 2 36 36 H 1.08998 * 109.58234 * 294.84496 * 6 5 4 37 37 H 1.09004 * 109.58420 * 174.42126 * 6 5 4 38 38 H 1.07997 * 119.70280 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.47149 * 179.75100 * 13 12 11 40 40 H 1.07997 * 120.86264 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.46646 * 309.49309 * 19 17 7 42 42 H 1.08998 * 109.47579 * 189.49522 * 19 17 7 43 43 H 0.97001 * 120.00037 * 355.32769 * 20 19 17 44 44 H 0.97005 * 119.99502 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2485 5 6 1.5030 -2.1557 -1.2662 6 6 2.0140 -2.9041 -0.0310 7 7 1.6516 -2.1383 1.1694 8 6 0.9748 -2.7222 2.1780 9 8 0.5788 -2.0527 3.1120 10 6 0.7141 -4.1772 2.1485 11 6 1.6802 -5.0614 1.6660 12 7 1.4508 -6.3576 1.6439 13 6 0.3090 -6.8708 2.0613 14 6 -0.7020 -6.0610 2.5493 15 17 -2.1972 -6.7555 3.0931 16 6 -0.5076 -4.6904 2.5991 17 6 2.0413 -0.7240 1.2495 18 1 3.1274 -0.6466 1.3004 19 6 1.4230 -0.0914 2.4978 20 7 2.0674 -0.6401 3.6936 21 6 1.7440 -0.1512 4.9311 22 1 1.0135 0.6387 5.0256 23 6 2.3587 -0.6673 6.0637 24 7 2.0517 -0.1935 7.2527 25 14 3.6216 -2.0339 5.9002 26 1 4.9738 -1.4416 5.7394 27 1 3.5943 -2.8815 7.1192 28 1 3.3006 -2.8649 4.7121 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0015 32 1 3.1305 -0.7444 -1.2354 33 1 1.6987 -0.1957 -2.1390 34 1 1.8480 -2.6627 -2.1673 35 1 0.4132 -2.1358 -1.2545 36 1 3.0979 -3.0043 -0.0871 37 1 1.5553 -3.8919 0.0134 38 1 2.6258 -4.6791 1.3109 39 1 0.1611 -7.9399 2.0219 40 1 -1.2789 -4.0348 2.9754 41 1 0.3559 -0.3121 2.5264 42 1 1.5700 0.9883 2.4689 43 1 2.7231 -1.3498 3.6087 44 1 2.4816 -0.5539 8.0441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732547342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:59 Heat of formation + Delta-G solvation = 33.917489 kcal Electronic energy + Delta-G solvation = -28537.992070 eV Core-core repulsion = 24710.573701 eV Total energy + Delta-G solvation = -3827.418370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.26497 -40.90340 -38.63170 -37.79368 -36.60288 -34.87116 -33.90241 -33.52910 -32.28120 -32.13233 -28.75006 -27.40096 -26.29554 -25.13672 -24.85502 -23.95449 -22.70008 -21.48195 -20.05046 -19.48266 -18.31944 -18.25415 -17.77359 -16.84608 -16.73693 -16.43045 -16.30736 -15.86486 -15.41748 -15.29110 -15.23248 -14.88619 -14.71297 -14.44749 -14.22268 -14.13644 -13.85868 -13.64013 -13.44824 -13.19963 -13.12440 -12.92887 -12.64086 -12.42783 -12.36071 -12.19496 -11.96818 -11.85508 -11.70199 -11.33683 -11.24623 -11.09694 -11.05830 -10.87901 -10.16781 -9.94018 -9.58219 -8.93687 -7.96871 -5.19962 -0.52717 -0.20275 0.80963 1.27009 1.33186 1.39086 1.78294 1.93696 2.47864 2.49421 3.15446 3.34784 3.38699 3.50770 3.57687 3.62511 3.75688 3.88276 3.93916 4.08153 4.17096 4.21394 4.25093 4.36203 4.51406 4.60108 4.64997 4.72787 4.78545 4.80647 4.88170 4.91597 5.01375 5.12890 5.16873 5.24088 5.28768 5.31655 5.37618 5.56314 5.74951 5.80645 6.26159 6.44550 6.52303 7.14989 7.30081 7.94098 8.11958 9.26770 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008083 B = 0.005864 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.303785 B = 4773.822923 C = 6915.802195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.089 0.911 4 C -0.107 4.107 5 C -0.131 4.131 6 C 0.091 3.909 7 N -0.600 5.600 8 C 0.521 3.479 9 O -0.498 6.498 10 C -0.171 4.171 11 C 0.133 3.867 12 N -0.475 5.475 13 C 0.134 3.866 14 C -0.094 4.094 15 Cl -0.040 7.040 16 C -0.030 4.030 17 C 0.149 3.851 18 H 0.079 0.921 19 C 0.163 3.837 20 N -0.724 5.724 21 C -0.192 4.192 22 H 0.047 0.953 23 C -0.075 4.075 24 N -0.994 5.994 25 Si 0.954 3.046 26 H -0.274 1.274 27 H -0.302 1.302 28 H -0.267 1.267 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.188 0.812 39 H 0.200 0.800 40 H 0.140 0.860 41 H 0.037 0.963 42 H 0.017 0.983 43 H 0.357 0.643 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -12.754 -24.744 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.144 4.144 5 C -0.169 4.169 6 C -0.030 4.030 7 N -0.336 5.336 8 C 0.307 3.693 9 O -0.371 6.371 10 C -0.176 4.176 11 C -0.024 4.024 12 N -0.183 5.183 13 C -0.023 4.023 14 C -0.123 4.123 15 Cl -0.011 7.011 16 C -0.057 4.057 17 C 0.046 3.954 18 H 0.097 0.903 19 C 0.037 3.963 20 N -0.367 5.367 21 C -0.323 4.323 22 H 0.065 0.935 23 C -0.265 4.265 24 N -0.647 5.647 25 Si 0.784 3.216 26 H -0.201 1.201 27 H -0.229 1.229 28 H -0.193 1.193 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.205 0.795 39 H 0.217 0.783 40 H 0.158 0.842 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.189 0.811 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.656 -12.862 -24.389 27.622 hybrid contribution -0.459 0.062 1.480 1.551 sum -2.115 -12.800 -22.909 26.327 Atomic orbital electron populations 1.21813 0.95271 1.01414 1.01341 1.21459 0.96286 0.99888 0.93708 0.89282 1.21528 1.01184 0.95223 0.96470 1.21950 1.01260 0.96176 0.97487 1.22357 1.01677 0.95444 0.83525 1.47858 1.56444 1.11053 1.18221 1.18436 0.81044 0.86796 0.83062 1.91234 1.48475 1.62766 1.34639 1.21144 0.96667 0.95523 1.04278 1.23517 0.98825 0.88032 0.92029 1.67967 1.20586 1.13650 1.16137 1.23450 0.86206 1.01929 0.90761 1.22005 0.91810 0.93529 1.04973 1.98396 1.30728 1.83738 1.88242 1.21638 0.96750 0.94305 0.93009 1.21523 0.98762 0.79879 0.95272 0.90347 1.21009 0.96928 0.94005 0.84313 1.42540 1.48557 1.43362 1.02289 1.18931 1.16234 1.12630 0.84555 0.93537 1.25330 1.03563 1.02818 0.94772 1.69893 1.49000 1.47977 0.97872 0.85390 0.79846 0.79975 0.76417 1.20050 1.22931 1.19268 0.94684 0.90962 0.93296 0.90555 0.89840 0.88072 0.91970 0.89011 0.89132 0.79536 0.78309 0.84194 0.94571 0.96508 0.81090 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.22 71.98 0.59 -2.56 16 2 C -0.09 -1.92 2.80 -10.71 -0.03 -1.95 16 3 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.11 -1.41 5.43 30.62 0.17 -1.24 16 5 C -0.13 -1.63 5.74 30.67 0.18 -1.45 16 6 C 0.09 1.47 4.84 86.36 0.42 1.89 16 7 N -0.60 -15.71 2.41 -798.41 -1.93 -17.63 16 8 C 0.52 17.67 6.75 86.79 0.59 18.25 16 9 O -0.50 -22.71 10.75 -3.88 -0.04 -22.75 16 10 C -0.17 -4.84 5.19 -20.00 -0.10 -4.94 16 11 C 0.13 3.06 8.56 85.04 0.73 3.79 16 12 N -0.48 -10.33 10.34 -194.67 -2.01 -12.34 16 13 C 0.13 2.59 10.97 84.72 0.93 3.52 16 14 C -0.09 -2.12 6.34 22.38 0.14 -1.97 16 15 Cl -0.04 -0.80 28.98 -2.72 -0.08 -0.88 16 16 C -0.03 -0.83 9.59 22.76 0.22 -0.61 16 17 C 0.15 4.21 2.63 44.98 0.12 4.33 16 18 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 19 C 0.16 6.66 4.05 86.38 0.35 7.01 16 20 N -0.72 -36.59 3.05 -343.46 -1.05 -37.63 16 21 C -0.19 -11.88 10.19 84.03 0.86 -11.03 16 22 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 24 N -0.99 -68.37 13.97 21.65 0.30 -68.07 16 25 Si 0.95 50.06 27.73 68.60 1.90 51.96 16 26 H -0.27 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.30 -16.11 7.11 99.48 0.71 -15.41 16 28 H -0.27 -13.09 6.52 99.48 0.65 -12.44 16 29 H 0.03 0.97 6.56 -2.39 -0.02 0.95 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.15 5.97 -2.39 -0.01 1.14 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.92 6.33 -2.39 -0.02 0.90 16 36 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 37 H 0.09 1.38 4.69 -2.38 -0.01 1.37 16 38 H 0.19 3.44 6.41 -2.91 -0.02 3.42 16 39 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.04 1.65 5.04 -2.38 -0.01 1.64 16 42 H 0.02 0.71 8.13 -2.39 -0.02 0.69 16 43 H 0.36 17.51 4.96 -92.71 -0.46 17.05 16 44 H 0.25 16.57 8.31 -92.70 -0.77 15.80 16 Total: -1.00 -81.27 352.28 3.23 -78.04 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.52 Total: 20.63 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 5.61 Total: 8.68 kcal Atomic # 7 Polarization: -130.99 SS G_CDS: -4.68 Total: -135.68 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.75 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.90 Total: 51.96 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -81.27 3.23 -78.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732547342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.953 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds