Wall clock time and date at job start Tue Mar 31 2020 20:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49524 * 2 1 4 4 C 1.53036 * 109.49949 * 239.93436 * 2 1 3 5 5 C 1.53040 * 109.54091 * 178.65324 * 4 2 1 6 6 C 1.53189 * 109.31516 * 61.36071 * 5 4 2 7 7 N 1.46922 * 108.77423 * 305.36853 * 6 5 4 8 8 C 1.34784 * 120.62876 * 233.60625 * 7 6 5 9 9 O 1.21555 * 119.99596 * 173.49553 * 8 7 6 10 10 C 1.47835 * 119.99997 * 353.49292 * 8 7 6 11 11 C 1.39559 * 120.55576 * 321.22387 * 10 8 7 12 12 N 1.31666 * 120.59787 * 180.02562 * 11 10 8 13 13 C 1.31942 * 121.89183 * 0.02562 * 12 11 10 14 14 C 1.38433 * 121.06502 * 0.02562 * 13 12 11 15 15 Cl 1.73599 * 120.36314 * 180.02562 * 14 13 12 16 16 C 1.38517 * 119.27322 * 359.71968 * 14 13 12 17 17 C 1.46926 * 118.73978 * 53.60913 * 7 6 5 18 18 H 1.08997 * 109.58686 * 66.17956 * 17 7 6 19 19 C 1.53003 * 109.58364 * 186.60265 * 17 7 6 20 20 N 1.46501 * 109.47196 * 291.46786 * 19 17 7 21 21 C 1.36941 * 119.99799 * 185.28608 * 20 19 17 22 22 H 1.07994 * 120.00273 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99671 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99758 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47291 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47288 * 119.99851 * 25 23 21 28 28 H 1.48501 * 109.46640 * 239.99556 * 25 23 21 29 29 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47188 * 300.00083 * 1 2 3 31 31 H 1.09001 * 109.47509 * 60.00408 * 1 2 3 32 32 H 1.09011 * 109.45884 * 298.67223 * 4 2 1 33 33 H 1.08995 * 109.45875 * 58.62514 * 4 2 1 34 34 H 1.08998 * 109.49464 * 181.31684 * 5 4 2 35 35 H 1.09002 * 109.49084 * 301.37692 * 5 4 2 36 36 H 1.08998 * 109.58472 * 65.15566 * 6 5 4 37 37 H 1.08997 * 109.58667 * 185.43793 * 6 5 4 38 38 H 1.07999 * 119.70194 * 359.97438 * 11 10 8 39 39 H 1.07997 * 119.47205 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.85458 * 180.27475 * 16 14 13 41 41 H 1.08994 * 109.47362 * 51.47051 * 19 17 7 42 42 H 1.09009 * 109.46813 * 171.46706 * 19 17 7 43 43 H 0.96995 * 120.00067 * 5.27949 * 20 19 17 44 44 H 0.97007 * 119.99285 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5708 -0.6940 -1.2665 6 6 4.1059 -1.4255 -0.0315 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3848 2.1774 9 8 3.7832 0.2132 3.1108 10 6 5.7402 -0.6256 2.1481 11 6 6.2500 -1.8366 1.6777 12 7 7.5486 -2.0522 1.6518 13 6 8.4141 -1.1457 2.0642 14 6 7.9892 0.0805 2.5461 15 17 9.1439 1.2601 3.0834 16 6 6.6328 0.3583 2.5889 17 6 2.0420 -0.7236 1.2494 18 1 1.6064 -1.7216 1.2979 19 6 1.6524 0.0705 2.4979 20 7 1.9762 -0.7107 3.6942 21 6 1.6167 -0.2480 4.9320 22 1 1.0950 0.6928 5.0263 23 6 1.9240 -0.9880 6.0656 24 7 2.5603 -2.1344 5.9507 25 14 1.4344 -0.3565 7.7541 26 1 0.7355 0.9460 7.6120 27 1 0.5284 -1.3363 8.4055 28 1 2.6505 -0.1770 8.5871 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6971 -1.7572 -1.2354 33 1 1.6576 -0.2243 -2.1389 34 1 3.9333 -1.1885 -2.1678 35 1 3.9153 0.3401 -1.2553 36 1 3.8387 -2.4807 -0.0875 37 1 5.1904 -1.3250 0.0113 38 1 5.5732 -2.6042 1.3325 39 1 9.4711 -1.3638 2.0252 40 1 6.2733 1.3083 2.9558 41 1 2.2039 1.0104 2.5174 42 1 0.5823 0.2774 2.4776 43 1 2.4450 -1.5556 3.6096 44 1 2.7746 -2.6516 6.7429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732547345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:17 Heat of formation + Delta-G solvation = 49.259440 kcal Electronic energy + Delta-G solvation = -28167.504337 eV Core-core repulsion = 24340.751244 eV Total energy + Delta-G solvation = -3826.753093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89063 -39.60040 -37.25536 -36.74738 -34.80079 -33.59013 -32.47268 -32.13189 -31.16969 -30.20741 -27.16888 -26.13382 -24.72640 -23.69551 -23.58210 -22.39736 -21.07726 -20.38160 -19.34098 -17.49339 -17.16063 -16.71855 -16.55382 -15.59517 -15.23316 -14.84230 -14.76248 -14.65313 -14.15367 -13.84703 -13.76755 -13.40764 -13.26368 -12.97815 -12.91268 -12.67792 -12.47672 -12.31037 -12.13245 -12.07839 -11.68901 -11.48969 -11.32876 -11.00784 -10.92072 -10.75671 -10.64446 -10.60881 -10.17539 -9.91893 -9.82628 -9.79945 -9.56553 -8.99543 -8.80184 -8.43012 -8.15530 -6.57614 -5.62311 -2.79914 0.64592 0.99235 1.87296 3.13719 3.23908 3.51490 3.56727 3.58829 3.73712 4.25890 4.57772 4.61115 4.68804 4.70989 4.80192 4.86003 4.86915 5.01793 5.17194 5.21581 5.33031 5.40983 5.54900 5.66404 5.70007 5.74530 5.75168 5.76747 5.83582 5.88667 5.93580 5.97607 6.08251 6.13121 6.27804 6.31019 6.40422 6.53961 6.61307 6.88511 7.21619 7.66725 7.81484 7.82924 8.55687 8.76294 9.67091 10.25830 10.59688 11.61195 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.007590 B = 0.005441 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.350480 B = 5144.421601 C = 7926.480498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.133 4.133 6 C 0.101 3.899 7 N -0.610 5.610 8 C 0.513 3.487 9 O -0.427 6.427 10 C -0.141 4.141 11 C 0.126 3.874 12 N -0.471 5.471 13 C 0.117 3.883 14 C -0.092 4.092 15 Cl -0.056 7.056 16 C -0.022 4.022 17 C 0.150 3.850 18 H 0.071 0.929 19 C 0.157 3.843 20 N -0.693 5.693 21 C -0.208 4.208 22 H 0.067 0.933 23 C -0.021 4.021 24 N -0.934 5.934 25 Si 0.902 3.098 26 H -0.282 1.282 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.041 0.959 42 H 0.022 0.978 43 H 0.379 0.621 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 2.761 -17.659 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.022 4.022 7 N -0.348 5.348 8 C 0.297 3.703 9 O -0.294 6.294 10 C -0.147 4.147 11 C -0.032 4.032 12 N -0.180 5.180 13 C -0.041 4.041 14 C -0.121 4.121 15 Cl -0.027 7.027 16 C -0.049 4.049 17 C 0.047 3.953 18 H 0.089 0.911 19 C 0.029 3.971 20 N -0.335 5.335 21 C -0.340 4.340 22 H 0.085 0.915 23 C -0.216 4.216 24 N -0.584 5.584 25 Si 0.734 3.266 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.222 1.222 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.186 0.814 39 H 0.182 0.818 40 H 0.169 0.831 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.213 0.787 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.597 2.539 -17.204 18.978 hybrid contribution -0.100 0.792 1.362 1.579 sum 7.497 3.331 -15.842 17.840 Atomic orbital electron populations 1.21842 0.94418 1.02132 1.02010 1.21474 0.96038 1.00017 0.94357 0.90873 1.21577 0.94951 1.00904 0.97612 1.21914 0.96446 1.01274 0.97539 1.21931 0.98344 0.97135 0.84826 1.47663 1.06231 1.63164 1.17709 1.17876 0.84792 0.84276 0.83385 1.91221 1.71057 1.35101 1.32048 1.21237 0.96075 0.95822 1.01601 1.23265 0.91700 0.95141 0.93110 1.67830 1.03195 1.31215 1.15711 1.22844 1.00377 0.87433 0.93452 1.21950 0.91344 0.93602 1.05247 1.98378 1.58613 1.57060 1.88677 1.21573 0.90184 1.00051 0.93085 1.21552 0.78307 0.99667 0.95794 0.91115 1.21013 0.96144 0.95265 0.84636 1.42334 1.67333 1.22931 1.00896 1.19214 1.27972 1.02733 0.84067 0.91504 1.24639 1.01996 0.97470 0.97449 1.69664 1.46499 1.14454 1.27798 0.86160 0.77468 0.77702 0.85229 1.20743 1.22196 1.22190 0.92554 0.91591 0.92872 0.91755 0.91934 0.91047 0.91654 0.91452 0.89891 0.81441 0.81799 0.83102 0.94150 0.96040 0.78716 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.98 37.16 0.33 -1.33 16 2 C -0.10 -1.21 2.34 -90.50 -0.21 -1.42 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -1.10 5.17 -26.69 -0.14 -1.23 16 5 C -0.13 -1.24 6.08 -26.61 -0.16 -1.41 16 6 C 0.10 1.12 4.85 -3.71 -0.02 1.10 16 7 N -0.61 -9.24 2.97 -166.33 -0.49 -9.73 16 8 C 0.51 9.37 6.69 -12.33 -0.08 9.29 16 9 O -0.43 -9.89 10.71 5.32 0.06 -9.84 16 10 C -0.14 -2.24 5.17 -104.83 -0.54 -2.78 16 11 C 0.13 1.76 8.57 -17.13 -0.15 1.62 16 12 N -0.47 -6.41 10.34 -12.88 -0.13 -6.55 16 13 C 0.12 1.43 10.97 -17.43 -0.19 1.23 16 14 C -0.09 -1.20 6.34 -39.41 -0.25 -1.45 16 15 Cl -0.06 -0.65 28.99 -51.86 -1.50 -2.15 16 16 C -0.02 -0.33 9.59 -38.83 -0.37 -0.70 16 17 C 0.15 2.38 2.40 -67.60 -0.16 2.22 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 19 C 0.16 3.23 4.78 -4.04 -0.02 3.21 16 20 N -0.69 -17.92 3.21 -59.90 -0.19 -18.11 16 21 C -0.21 -6.03 9.71 -15.06 -0.15 -6.17 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 24 N -0.93 -29.22 13.06 55.49 0.72 -28.50 16 25 Si 0.90 23.50 29.55 -169.99 -5.02 18.47 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.84 6.45 -51.92 -0.34 0.50 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.08 0.88 4.73 -51.93 -0.25 0.63 16 38 H 0.17 2.09 6.47 -52.49 -0.34 1.75 16 39 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 41 H 0.04 0.91 6.35 -51.93 -0.33 0.58 16 42 H 0.02 0.45 6.29 -51.92 -0.33 0.12 16 43 H 0.38 10.46 6.98 -40.82 -0.29 10.18 16 44 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -33.49 360.05 -9.40 -42.89 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.06 Total: 6.62 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.20 Total: 1.46 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.10 Total: -62.89 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.06 Total: -9.84 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.47 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.49 -9.40 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732547345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.148 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds