Wall clock time and date at job start Tue Mar 31 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49524 * 2 1 4 4 C 1.53036 * 109.49949 * 239.93436 * 2 1 3 5 5 C 1.53040 * 109.54091 * 178.65324 * 4 2 1 6 6 C 1.53189 * 109.31516 * 61.36071 * 5 4 2 7 7 N 1.46922 * 108.77423 * 305.36853 * 6 5 4 8 8 C 1.34784 * 120.62876 * 233.60625 * 7 6 5 9 9 O 1.21555 * 119.99596 * 173.49553 * 8 7 6 10 10 C 1.47835 * 119.99997 * 353.49292 * 8 7 6 11 11 C 1.39559 * 120.55576 * 321.22387 * 10 8 7 12 12 N 1.31666 * 120.59787 * 180.02562 * 11 10 8 13 13 C 1.31942 * 121.89183 * 0.02562 * 12 11 10 14 14 C 1.38433 * 121.06502 * 0.02562 * 13 12 11 15 15 Cl 1.73599 * 120.36314 * 180.02562 * 14 13 12 16 16 C 1.38517 * 119.27322 * 359.71968 * 14 13 12 17 17 C 1.46926 * 118.73978 * 53.60913 * 7 6 5 18 18 H 1.08997 * 109.58686 * 66.17956 * 17 7 6 19 19 C 1.53003 * 109.58364 * 186.60265 * 17 7 6 20 20 N 1.46501 * 109.47196 * 291.46786 * 19 17 7 21 21 C 1.36941 * 119.99799 * 185.28608 * 20 19 17 22 22 H 1.07994 * 120.00273 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99671 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99758 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47291 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47288 * 119.99851 * 25 23 21 28 28 H 1.48501 * 109.46640 * 239.99556 * 25 23 21 29 29 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47188 * 300.00083 * 1 2 3 31 31 H 1.09001 * 109.47509 * 60.00408 * 1 2 3 32 32 H 1.09011 * 109.45884 * 298.67223 * 4 2 1 33 33 H 1.08995 * 109.45875 * 58.62514 * 4 2 1 34 34 H 1.08998 * 109.49464 * 181.31684 * 5 4 2 35 35 H 1.09002 * 109.49084 * 301.37692 * 5 4 2 36 36 H 1.08998 * 109.58472 * 65.15566 * 6 5 4 37 37 H 1.08997 * 109.58667 * 185.43793 * 6 5 4 38 38 H 1.07999 * 119.70194 * 359.97438 * 11 10 8 39 39 H 1.07997 * 119.47205 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.85458 * 180.27475 * 16 14 13 41 41 H 1.08994 * 109.47362 * 51.47051 * 19 17 7 42 42 H 1.09009 * 109.46813 * 171.46706 * 19 17 7 43 43 H 0.96995 * 120.00067 * 5.27949 * 20 19 17 44 44 H 0.97007 * 119.99285 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 3.5708 -0.6940 -1.2665 6 6 4.1059 -1.4255 -0.0315 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3848 2.1774 9 8 3.7832 0.2132 3.1108 10 6 5.7402 -0.6256 2.1481 11 6 6.2500 -1.8366 1.6777 12 7 7.5486 -2.0522 1.6518 13 6 8.4141 -1.1457 2.0642 14 6 7.9892 0.0805 2.5461 15 17 9.1439 1.2601 3.0834 16 6 6.6328 0.3583 2.5889 17 6 2.0420 -0.7236 1.2494 18 1 1.6064 -1.7216 1.2979 19 6 1.6524 0.0705 2.4979 20 7 1.9762 -0.7107 3.6942 21 6 1.6167 -0.2480 4.9320 22 1 1.0950 0.6928 5.0263 23 6 1.9240 -0.9880 6.0656 24 7 2.5603 -2.1344 5.9507 25 14 1.4344 -0.3565 7.7541 26 1 0.7355 0.9460 7.6120 27 1 0.5284 -1.3363 8.4055 28 1 2.6505 -0.1770 8.5871 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6971 -1.7572 -1.2354 33 1 1.6576 -0.2243 -2.1389 34 1 3.9333 -1.1885 -2.1678 35 1 3.9153 0.3401 -1.2553 36 1 3.8387 -2.4807 -0.0875 37 1 5.1904 -1.3250 0.0113 38 1 5.5732 -2.6042 1.3325 39 1 9.4711 -1.3638 2.0252 40 1 6.2733 1.3083 2.9558 41 1 2.2039 1.0104 2.5174 42 1 0.5823 0.2774 2.4776 43 1 2.4450 -1.5556 3.6096 44 1 2.7746 -2.6516 6.7429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732547345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:15 Heat of formation + Delta-G solvation = 27.889939 kcal Electronic energy + Delta-G solvation = -28168.430988 eV Core-core repulsion = 24340.751244 eV Total energy + Delta-G solvation = -3827.679744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.12515 -40.78049 -38.50512 -37.76466 -36.46678 -34.96073 -33.79554 -33.47875 -32.26585 -31.91368 -28.58574 -27.18799 -26.24969 -25.05775 -24.79949 -23.86390 -22.31963 -21.48052 -20.56563 -19.23767 -18.26398 -18.20556 -17.74025 -16.89437 -16.61359 -16.39047 -16.00409 -15.71306 -15.50922 -15.22477 -15.09231 -14.94135 -14.49790 -14.41049 -14.07667 -13.85239 -13.76744 -13.59486 -13.29639 -13.14152 -12.97143 -12.84892 -12.78057 -12.48554 -12.33454 -12.08807 -11.93652 -11.85540 -11.61428 -11.53428 -11.15216 -11.04192 -11.02132 -10.82396 -10.12559 -9.88224 -9.51162 -8.63629 -7.86227 -5.04381 -0.46549 -0.15585 0.83413 1.41891 1.43858 1.53039 1.86055 2.00275 2.52798 2.59972 3.20840 3.43830 3.48728 3.54973 3.63066 3.75720 3.79285 3.91305 4.00169 4.10936 4.18817 4.31679 4.35699 4.42087 4.55130 4.60879 4.68014 4.78587 4.81106 4.84131 4.87409 4.97796 5.03248 5.13001 5.21430 5.25226 5.29846 5.32101 5.43100 5.51519 5.55641 5.79407 6.35333 6.51377 6.57306 7.37046 7.42933 8.21303 8.43744 9.38438 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.007590 B = 0.005441 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.350480 B = 5144.421601 C = 7926.480498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.093 3.907 7 N -0.604 5.604 8 C 0.519 3.481 9 O -0.493 6.493 10 C -0.164 4.164 11 C 0.135 3.865 12 N -0.476 5.476 13 C 0.131 3.869 14 C -0.093 4.093 15 Cl -0.040 7.040 16 C -0.031 4.031 17 C 0.155 3.845 18 H 0.067 0.933 19 C 0.161 3.839 20 N -0.703 5.703 21 C -0.207 4.207 22 H 0.062 0.938 23 C -0.083 4.083 24 N -0.972 5.972 25 Si 0.963 3.037 26 H -0.271 1.271 27 H -0.292 1.292 28 H -0.301 1.301 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.183 0.817 39 H 0.200 0.800 40 H 0.140 0.860 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.367 0.633 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 2.343 -20.374 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.165 4.165 6 C -0.029 4.029 7 N -0.340 5.340 8 C 0.304 3.696 9 O -0.365 6.365 10 C -0.169 4.169 11 C -0.023 4.023 12 N -0.184 5.184 13 C -0.026 4.026 14 C -0.122 4.122 15 Cl -0.011 7.011 16 C -0.058 4.058 17 C 0.051 3.949 18 H 0.085 0.915 19 C 0.035 3.965 20 N -0.344 5.344 21 C -0.340 4.340 22 H 0.080 0.920 23 C -0.274 4.274 24 N -0.625 5.625 25 Si 0.794 3.206 26 H -0.196 1.196 27 H -0.219 1.219 28 H -0.229 1.229 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.199 0.801 39 H 0.217 0.783 40 H 0.158 0.842 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.199 0.801 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.769 2.137 -20.014 21.955 hybrid contribution -0.277 1.002 2.034 2.284 sum 8.492 3.139 -17.980 20.131 Atomic orbital electron populations 1.21824 0.93646 1.02475 1.02202 1.21424 0.96625 0.99298 0.93747 0.91808 1.21571 0.95137 1.01197 0.96591 1.21905 0.96109 1.00984 0.97540 1.22282 0.98745 0.98140 0.83701 1.47831 1.05902 1.61939 1.18295 1.18394 0.85991 0.82309 0.82870 1.91203 1.72465 1.38540 1.34325 1.21110 0.94694 0.97260 1.03873 1.23422 0.92280 0.94455 0.92106 1.67950 1.02882 1.31427 1.16134 1.23440 1.01772 0.86381 0.91024 1.21978 0.90756 0.94396 1.05058 1.98387 1.57670 1.56568 1.88480 1.21603 0.91306 0.99733 0.93150 1.21450 0.79014 0.99019 0.95374 0.91549 1.21000 0.95521 0.94720 0.85239 1.42347 1.67707 1.22912 1.01423 1.19488 1.26701 1.02101 0.85728 0.92026 1.25333 1.03264 0.98136 1.00706 1.69815 1.48888 1.15808 1.27972 0.85190 0.76780 0.77575 0.81075 1.19567 1.21885 1.22871 0.92118 0.93713 0.90356 0.90889 0.89631 0.87849 0.92311 0.89646 0.89189 0.80050 0.78294 0.84230 0.96266 0.96094 0.80139 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.98 71.98 0.65 -2.42 16 2 C -0.09 -2.11 2.34 -10.72 -0.03 -2.14 16 3 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.11 -1.72 5.17 30.62 0.16 -1.56 16 5 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 6 C 0.09 1.84 4.85 86.36 0.42 2.26 16 7 N -0.60 -18.24 2.97 -798.43 -2.37 -20.61 16 8 C 0.52 19.62 6.69 86.78 0.58 20.20 16 9 O -0.49 -24.25 10.71 -3.89 -0.04 -24.29 16 10 C -0.16 -5.21 5.17 -20.00 -0.10 -5.31 16 11 C 0.13 3.59 8.57 85.04 0.73 4.32 16 12 N -0.48 -11.82 10.34 -194.67 -2.01 -13.83 16 13 C 0.13 2.86 10.97 84.72 0.93 3.79 16 14 C -0.09 -2.28 6.34 22.38 0.14 -2.14 16 15 Cl -0.04 -0.86 28.99 -2.72 -0.08 -0.94 16 16 C -0.03 -0.93 9.59 22.76 0.22 -0.71 16 17 C 0.15 4.95 2.40 44.98 0.11 5.06 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.16 6.99 4.78 86.38 0.41 7.41 16 20 N -0.70 -38.23 3.21 -343.44 -1.10 -39.34 16 21 C -0.21 -12.54 9.71 84.03 0.82 -11.72 16 22 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 24 N -0.97 -63.17 13.06 21.65 0.28 -62.88 16 25 Si 0.96 50.02 29.55 68.60 2.03 52.05 16 26 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 28 H -0.30 -15.78 7.11 99.48 0.71 -15.07 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.14 6.45 -2.38 -0.02 1.12 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 37 H 0.09 1.69 4.73 -2.39 -0.01 1.68 16 38 H 0.18 4.22 6.47 -2.91 -0.02 4.20 16 39 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.02 0.94 6.35 -2.39 -0.02 0.92 16 42 H 0.02 0.91 6.29 -2.38 -0.01 0.90 16 43 H 0.37 21.29 6.98 -92.71 -0.65 20.64 16 44 H 0.24 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -76.99 360.05 2.77 -74.22 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.38 Total: 25.02 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.68 Total: 10.60 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -5.21 Total: -136.66 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.04 Total: -24.29 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.03 Total: 52.05 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -76.99 2.77 -74.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732547345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.113 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds