Wall clock time and date at job start Tue Mar 31 2020 21:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46870 * 2 1 4 4 C 1.53000 * 109.47337 * 120.00546 * 2 1 3 5 5 N 1.46899 * 109.46917 * 174.99952 * 4 2 1 6 6 C 1.46898 * 110.99826 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47265 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00321 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00145 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00000 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99957 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00086 * 179.97438 * 10 9 7 13 13 N 1.31409 * 119.99737 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00249 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46719 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47083 * 119.99840 * 14 12 10 17 17 H 1.48496 * 109.47065 * 240.00233 * 14 12 10 18 18 N 1.46498 * 109.46750 * 240.00456 * 2 1 3 19 19 C 1.34782 * 120.00189 * 84.99898 * 18 2 1 20 20 O 1.21287 * 119.99775 * 5.00909 * 19 18 2 21 21 C 1.50695 * 120.00407 * 184.72684 * 19 18 2 22 22 C 1.52999 * 115.55067 * 294.48424 * 21 19 18 23 23 F 1.39902 * 109.47025 * 65.28247 * 22 21 19 24 24 F 1.39904 * 109.47193 * 185.27894 * 22 21 19 25 25 F 1.39896 * 109.47119 * 305.28433 * 22 21 19 26 26 C 1.52996 * 117.50157 * 148.80943 * 21 19 18 27 27 C 1.53004 * 117.49460 * 80.14918 * 21 19 18 28 28 H 1.09001 * 109.47156 * 299.99525 * 1 2 3 29 29 H 1.09001 * 109.47183 * 59.99241 * 1 2 3 30 30 H 1.08997 * 109.47579 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46631 * 294.99647 * 4 2 1 32 32 H 1.09004 * 109.46856 * 54.99855 * 4 2 1 33 33 H 1.00895 * 111.00057 * 56.04503 * 5 4 2 34 34 H 1.09001 * 109.46763 * 299.99842 * 6 5 4 35 35 H 1.08993 * 109.47424 * 59.99619 * 6 5 4 36 36 H 0.96999 * 119.99973 * 359.97438 * 9 7 6 37 37 H 0.96998 * 119.99948 * 179.97438 * 13 12 10 38 38 H 0.97002 * 120.00150 * 264.99764 * 18 2 1 39 39 H 1.09005 * 117.49950 * 0.02562 * 26 21 19 40 40 H 1.09003 * 117.50124 * 145.01881 * 26 21 19 41 41 H 1.09001 * 117.49467 * 214.97810 * 27 21 19 42 42 H 1.08994 * 117.49834 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5041 -0.8267 1.1902 6 6 4.0304 -1.5161 2.3759 7 6 5.5317 -1.6045 2.2804 8 8 6.1067 -1.1395 1.3190 9 7 6.2355 -2.2003 3.2634 10 6 7.6014 -2.2812 3.1762 11 1 8.1133 -1.8671 2.3202 12 6 8.3271 -2.8950 4.1898 13 7 7.7042 -3.3975 5.2322 14 14 10.1881 -3.0046 4.0715 15 1 10.6422 -2.3664 2.8099 16 1 10.7998 -2.3032 5.2286 17 1 10.6016 -4.4308 4.0821 18 7 2.0182 -0.6905 -1.1962 19 6 2.1469 -0.0181 -2.3572 20 8 1.9459 1.1775 -2.3910 21 6 2.5467 -0.7506 -3.6120 22 6 3.9563 -1.3454 -3.6082 23 9 4.0352 -2.3517 -2.6396 24 9 4.2374 -1.8870 -4.8672 25 9 4.8852 -0.3415 -3.3144 26 6 2.0073 -0.2203 -4.9419 27 6 1.4560 -1.5230 -4.3569 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9280 0.0825 1.0822 34 1 3.7558 -0.9590 3.2717 35 1 3.6095 -2.5201 2.4291 36 1 5.7757 -2.5719 4.0324 37 1 8.2107 -3.8263 5.9396 38 1 2.2489 -1.6317 -1.1528 39 1 1.3635 0.6588 -4.9093 40 1 2.6565 -0.2954 -5.8142 41 1 1.7429 -2.4547 -4.8446 42 1 0.4493 -1.5009 -3.9395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733013908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:50 Heat of formation + Delta-G solvation = -199.307073 kcal Electronic energy + Delta-G solvation = -30126.987059 eV Core-core repulsion = 25306.889409 eV Total energy + Delta-G solvation = -4820.097651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.16353 -47.73470 -47.57501 -40.35710 -38.36333 -37.44796 -36.35223 -34.33929 -33.66544 -31.29656 -31.07577 -27.63337 -27.46275 -25.11588 -24.08149 -23.16056 -23.05766 -21.14767 -20.47324 -19.24850 -18.81361 -18.36610 -18.28995 -17.88114 -16.78565 -16.49922 -15.89694 -15.37486 -15.07856 -14.80772 -14.57103 -14.50828 -14.42192 -14.21106 -14.15902 -14.03484 -13.92870 -13.75163 -13.71775 -13.51399 -13.28384 -12.65127 -12.61896 -12.47525 -12.10642 -12.06275 -11.85132 -11.56216 -11.48396 -11.24655 -11.21402 -11.04849 -11.00151 -10.33153 -10.21385 -10.13951 -9.50858 -9.21042 -8.47790 -8.10599 -7.95061 -6.41037 -3.81518 2.01890 2.59535 2.71962 2.99652 3.17281 3.27840 3.35625 3.56863 3.81417 3.91549 4.01884 4.02917 4.21297 4.30353 4.46794 4.55425 4.70279 4.97695 5.02618 5.06455 5.07882 5.18606 5.26205 5.33339 5.40085 5.47099 5.52384 5.53478 5.75515 5.80700 5.94432 5.95533 6.25382 6.33668 7.12578 7.34374 7.56582 7.57705 7.98979 8.07588 8.62301 9.19282 9.55247 10.06916 10.76856 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002993 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.058994 B = 9353.858193 C =10842.827330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.090 0.910 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.579 6.579 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.695 5.695 19 C 0.561 3.439 20 O -0.525 6.525 21 C -0.239 4.239 22 C 0.498 3.502 23 F -0.167 7.167 24 F -0.179 7.179 25 F -0.167 7.167 26 C -0.116 4.116 27 C -0.130 4.130 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.351 0.649 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.410 0.590 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 2.373 -14.805 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.081 4.081 7 C 0.225 3.775 8 O -0.463 6.463 9 N -0.201 5.201 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.346 5.346 19 C 0.344 3.656 20 O -0.401 6.401 21 C -0.244 4.244 22 C 0.443 3.557 23 F -0.148 7.148 24 F -0.161 7.161 25 F -0.148 7.148 26 C -0.154 4.154 27 C -0.167 4.167 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.246 0.754 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.936 2.870 -15.659 23.982 hybrid contribution 1.043 -0.319 1.413 1.784 sum -16.894 2.551 -14.247 22.246 Atomic orbital electron populations 1.22142 0.94665 1.02406 1.02719 1.21049 0.93701 0.97716 0.83731 0.89212 1.22309 0.89736 1.00736 0.95449 1.60047 1.02883 1.26944 1.40130 1.21671 0.95400 0.99822 0.91243 1.19806 0.88000 0.84621 0.85050 1.90550 1.71056 1.51634 1.33083 1.41863 1.07405 1.51053 1.19817 1.19759 0.81508 1.34976 1.06473 0.87885 1.25254 1.00675 0.96814 0.95229 1.69618 1.36589 1.38808 1.09407 0.85807 0.82273 0.77916 0.78417 1.19197 1.20786 1.20735 1.45801 1.65564 1.14836 1.08370 1.18616 0.77462 0.86604 0.82935 1.90718 1.50533 1.13666 1.85212 1.22594 0.93549 1.10198 0.98043 1.18988 0.86528 0.76425 0.73769 1.93257 1.96679 1.61597 1.63283 1.93166 1.94590 1.86661 1.41671 1.93269 1.68195 1.60347 1.93028 1.23194 1.01808 0.98669 0.91689 1.23240 0.96514 0.97285 0.99687 0.91277 0.92017 0.92106 0.93655 0.90331 0.82902 0.93817 0.89572 0.77513 0.91960 0.75396 0.86034 0.86466 0.86437 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.52 2.86 -67.93 -0.19 1.33 16 3 H 0.09 1.12 7.51 -51.93 -0.39 0.73 16 4 C 0.05 0.52 5.24 -3.82 -0.02 0.50 16 5 N -0.67 -10.32 5.85 -115.06 -0.67 -11.00 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 7 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 8 O -0.58 -15.95 15.78 5.54 0.09 -15.87 16 9 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 11 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 14 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 N -0.69 -8.01 4.76 -53.81 -0.26 -8.26 16 19 C 0.56 7.15 6.84 -10.99 -0.08 7.08 16 20 O -0.53 -8.18 16.34 5.55 0.09 -8.09 16 21 C -0.24 -2.52 2.02 -155.66 -0.32 -2.84 16 22 C 0.50 6.42 3.06 37.16 0.11 6.53 16 23 F -0.17 -2.37 16.30 2.25 0.04 -2.34 16 24 F -0.18 -2.07 15.90 2.25 0.04 -2.03 16 25 F -0.17 -2.67 17.12 2.25 0.04 -2.63 16 26 C -0.12 -0.91 9.48 -26.69 -0.25 -1.16 16 27 C -0.13 -0.87 9.70 -26.69 -0.26 -1.12 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.35 5.99 8.43 -39.29 -0.33 5.66 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.41 4.60 7.63 -40.82 -0.31 4.29 16 39 H 0.12 0.93 8.00 -51.93 -0.42 0.52 16 40 H 0.12 0.79 7.63 -51.93 -0.40 0.39 16 41 H 0.12 0.64 7.94 -51.93 -0.41 0.23 16 42 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -33.77 374.74 -5.83 -39.60 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -5.47 Total: 14.58 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -1.01 Total: 12.47 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.26 Total: -57.61 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.18 Total: -23.96 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.11 Total: -7.00 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.77 -5.83 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733013908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.712 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds