Wall clock time and date at job start Tue Mar 31 2020 21:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46870 * 2 1 4 4 C 1.53000 * 109.47337 * 120.00546 * 2 1 3 5 5 N 1.46899 * 109.46917 * 174.99952 * 4 2 1 6 6 C 1.46898 * 110.99826 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47265 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00321 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00145 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00000 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99957 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00086 * 179.97438 * 10 9 7 13 13 N 1.31409 * 119.99737 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00249 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46719 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47083 * 119.99840 * 14 12 10 17 17 H 1.48496 * 109.47065 * 240.00233 * 14 12 10 18 18 N 1.46498 * 109.46750 * 240.00456 * 2 1 3 19 19 C 1.34782 * 120.00189 * 84.99898 * 18 2 1 20 20 O 1.21287 * 119.99775 * 5.00909 * 19 18 2 21 21 C 1.50695 * 120.00407 * 184.72684 * 19 18 2 22 22 C 1.52999 * 115.55067 * 294.48424 * 21 19 18 23 23 F 1.39902 * 109.47025 * 65.28247 * 22 21 19 24 24 F 1.39904 * 109.47193 * 185.27894 * 22 21 19 25 25 F 1.39896 * 109.47119 * 305.28433 * 22 21 19 26 26 C 1.52996 * 117.50157 * 148.80943 * 21 19 18 27 27 C 1.53004 * 117.49460 * 80.14918 * 21 19 18 28 28 H 1.09001 * 109.47156 * 299.99525 * 1 2 3 29 29 H 1.09001 * 109.47183 * 59.99241 * 1 2 3 30 30 H 1.08997 * 109.47579 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46631 * 294.99647 * 4 2 1 32 32 H 1.09004 * 109.46856 * 54.99855 * 4 2 1 33 33 H 1.00895 * 111.00057 * 56.04503 * 5 4 2 34 34 H 1.09001 * 109.46763 * 299.99842 * 6 5 4 35 35 H 1.08993 * 109.47424 * 59.99619 * 6 5 4 36 36 H 0.96999 * 119.99973 * 359.97438 * 9 7 6 37 37 H 0.96998 * 119.99948 * 179.97438 * 13 12 10 38 38 H 0.97002 * 120.00150 * 264.99764 * 18 2 1 39 39 H 1.09005 * 117.49950 * 0.02562 * 26 21 19 40 40 H 1.09003 * 117.50124 * 145.01881 * 26 21 19 41 41 H 1.09001 * 117.49467 * 214.97810 * 27 21 19 42 42 H 1.08994 * 117.49834 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5041 -0.8267 1.1902 6 6 4.0304 -1.5161 2.3759 7 6 5.5317 -1.6045 2.2804 8 8 6.1067 -1.1395 1.3190 9 7 6.2355 -2.2003 3.2634 10 6 7.6014 -2.2812 3.1762 11 1 8.1133 -1.8671 2.3202 12 6 8.3271 -2.8950 4.1898 13 7 7.7042 -3.3975 5.2322 14 14 10.1881 -3.0046 4.0715 15 1 10.6422 -2.3664 2.8099 16 1 10.7998 -2.3032 5.2286 17 1 10.6016 -4.4308 4.0821 18 7 2.0182 -0.6905 -1.1962 19 6 2.1469 -0.0181 -2.3572 20 8 1.9459 1.1775 -2.3910 21 6 2.5467 -0.7506 -3.6120 22 6 3.9563 -1.3454 -3.6082 23 9 4.0352 -2.3517 -2.6396 24 9 4.2374 -1.8870 -4.8672 25 9 4.8852 -0.3415 -3.3144 26 6 2.0073 -0.2203 -4.9419 27 6 1.4560 -1.5230 -4.3569 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9280 0.0825 1.0822 34 1 3.7558 -0.9590 3.2717 35 1 3.6095 -2.5201 2.4291 36 1 5.7757 -2.5719 4.0324 37 1 8.2107 -3.8263 5.9396 38 1 2.2489 -1.6317 -1.1528 39 1 1.3635 0.6588 -4.9093 40 1 2.6565 -0.2954 -5.8142 41 1 1.7429 -2.4547 -4.8446 42 1 0.4493 -1.5009 -3.9395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733013908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:49 Heat of formation + Delta-G solvation = -225.236426 kcal Electronic energy + Delta-G solvation = -30128.111440 eV Core-core repulsion = 25306.889409 eV Total energy + Delta-G solvation = -4821.222032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.21126 -48.75640 -48.69746 -41.27325 -40.15179 -38.36116 -37.34412 -36.04799 -35.16872 -33.26843 -32.06869 -28.97680 -28.33615 -26.73106 -25.18838 -24.36331 -23.65523 -22.04166 -21.42319 -21.04607 -19.93184 -19.78564 -19.41660 -19.26153 -18.03351 -17.50342 -17.25325 -16.64294 -16.39371 -16.15179 -15.95224 -15.72577 -15.55909 -15.37696 -15.22062 -15.13431 -15.00603 -14.97212 -14.85933 -14.71673 -14.59899 -14.07167 -13.57109 -13.41988 -13.37491 -13.09703 -12.99866 -12.81463 -12.76181 -12.60715 -12.41806 -12.13716 -11.97460 -11.95207 -11.81708 -11.52327 -11.10692 -10.36944 -10.12793 -10.01758 -9.35349 -8.48067 -5.96300 1.07818 1.34978 1.40271 1.54348 1.72491 1.90514 2.05493 2.20201 2.28106 2.66649 2.86166 2.93229 3.19449 3.21323 3.40471 3.52474 3.63772 3.74466 3.81695 4.15958 4.31007 4.36223 4.43105 4.51644 4.55390 4.58320 4.64458 4.75095 4.77753 4.80615 4.99818 5.02649 5.28067 5.40089 5.45367 5.86192 6.08452 6.29260 6.41301 6.59869 7.05797 7.12512 7.56128 8.12495 8.69559 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002993 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.058994 B = 9353.858193 C =10842.827330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.066 0.934 4 C 0.053 3.947 5 N -0.683 5.683 6 C 0.067 3.933 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.075 0.925 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.276 1.276 16 H -0.270 1.270 17 H -0.269 1.269 18 N -0.691 5.691 19 C 0.557 3.443 20 O -0.562 6.562 21 C -0.262 4.262 22 C 0.493 3.507 23 F -0.178 7.178 24 F -0.171 7.171 25 F -0.193 7.193 26 C -0.112 4.112 27 C -0.099 4.099 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.338 0.662 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.412 0.588 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.069 1.262 -14.656 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.076 4.076 5 N -0.314 5.314 6 C -0.065 4.065 7 C 0.223 3.777 8 O -0.511 6.511 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.093 0.907 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.201 1.201 16 H -0.195 1.195 17 H -0.194 1.194 18 N -0.341 5.341 19 C 0.341 3.659 20 O -0.441 6.441 21 C -0.267 4.267 22 C 0.439 3.561 23 F -0.160 7.160 24 F -0.152 7.152 25 F -0.174 7.174 26 C -0.149 4.149 27 C -0.136 4.136 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.156 0.844 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.754 1.723 -15.479 25.155 hybrid contribution 1.576 0.031 1.340 2.069 sum -18.178 1.753 -14.138 23.096 Atomic orbital electron populations 1.22052 0.92181 1.03605 1.03000 1.21122 0.95495 0.96325 0.83391 0.91611 1.22414 0.86688 1.02300 0.96230 1.60051 1.05556 1.26209 1.39629 1.21532 0.90168 1.01839 0.92941 1.21000 0.90801 0.82430 0.83500 1.90521 1.72891 1.53010 1.34675 1.41918 1.06767 1.51779 1.20585 1.19664 0.83186 1.36883 1.06559 0.90713 1.25991 1.04752 0.95834 0.94536 1.69665 1.38141 1.38570 1.09632 0.84911 0.77104 0.78384 0.78189 1.20116 1.19494 1.19431 1.45879 1.64928 1.14854 1.08427 1.18957 0.76857 0.86286 0.83783 1.90691 1.52390 1.15142 1.85856 1.22522 0.93062 1.12789 0.98339 1.19341 0.87261 0.75843 0.73695 1.93226 1.96795 1.62055 1.63893 1.93171 1.94652 1.86489 1.40930 1.93213 1.69480 1.61449 1.93284 1.23354 1.01584 0.99607 0.90375 1.23485 0.95875 0.97234 0.97010 0.89759 0.92990 0.90369 0.91668 0.88263 0.84375 0.91322 0.87162 0.76894 0.91276 0.75154 0.85973 0.85405 0.84724 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.48 71.98 0.68 -1.41 16 2 C 0.14 2.85 2.86 44.99 0.13 2.98 16 3 H 0.07 1.66 7.51 -2.39 -0.02 1.65 16 4 C 0.05 1.03 5.24 86.30 0.45 1.48 16 5 N -0.68 -20.52 5.85 -517.95 -3.03 -23.55 16 6 C 0.07 2.20 6.17 85.56 0.53 2.73 16 7 C 0.44 20.80 7.82 87.65 0.69 21.49 16 8 O -0.62 -35.58 15.78 -3.08 -0.05 -35.62 16 9 N -0.57 -29.53 5.29 -306.97 -1.62 -31.16 16 10 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 11 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 12 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 13 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 14 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 N -0.69 -15.48 4.76 -442.53 -2.11 -17.59 16 19 C 0.56 14.19 6.84 87.65 0.60 14.79 16 20 O -0.56 -17.89 16.34 -3.05 -0.05 -17.94 16 21 C -0.26 -5.36 2.02 -52.93 -0.11 -5.47 16 22 C 0.49 12.79 3.06 71.98 0.22 13.01 16 23 F -0.18 -5.12 16.30 44.97 0.73 -4.39 16 24 F -0.17 -3.84 15.90 44.97 0.72 -3.13 16 25 F -0.19 -6.45 17.12 44.97 0.77 -5.68 16 26 C -0.11 -1.59 9.48 30.62 0.29 -1.30 16 27 C -0.10 -1.08 9.70 30.62 0.30 -0.78 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.34 11.69 8.43 -89.70 -0.76 10.93 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 37 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 38 H 0.41 8.86 7.63 -92.71 -0.71 8.16 16 39 H 0.12 1.74 8.00 -2.38 -0.02 1.72 16 40 H 0.13 1.51 7.63 -2.39 -0.02 1.50 16 41 H 0.13 1.04 7.94 -2.39 -0.02 1.02 16 42 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -75.96 374.74 1.63 -74.33 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -1.10 Total: 39.54 kcal Atomic # 6 Polarization: 23.88 SS G_CDS: 5.06 Total: 28.94 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.48 Total: -121.71 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.10 Total: -53.57 kcal Atomic # 9 Polarization: -15.41 SS G_CDS: 2.22 Total: -13.19 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.96 1.63 -74.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733013908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.905 kcal (2) G-P(sol) polarization free energy of solvation -75.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds