Wall clock time and date at job start Tue Mar 31 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.50701 * 109.47390 * 239.99856 * 2 1 3 5 5 O 1.21275 * 119.99849 * 240.00256 * 4 2 1 6 6 N 1.34776 * 119.99785 * 59.72341 * 4 2 1 7 7 C 1.46502 * 120.00322 * 180.27478 * 6 4 2 8 8 C 1.52995 * 109.47386 * 175.59352 * 7 6 4 9 9 N 1.46903 * 115.54705 * 279.61745 * 8 7 6 10 10 C 1.46895 * 111.00087 * 294.62652 * 9 8 7 11 11 C 1.50706 * 109.47175 * 179.60081 * 10 9 8 12 12 O 1.21288 * 119.99967 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99660 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99620 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99522 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00082 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99737 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00193 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46627 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47034 * 119.99387 * 18 16 14 21 21 H 1.48496 * 109.46956 * 239.99758 * 18 16 14 22 22 C 1.52995 * 117.50035 * 133.94752 * 8 7 6 23 23 C 1.52993 * 117.49853 * 65.28610 * 8 7 6 24 24 C 1.53004 * 109.46938 * 119.99735 * 2 1 3 25 25 F 1.39900 * 109.47116 * 179.97438 * 24 2 1 26 26 F 1.39890 * 109.47302 * 300.00127 * 24 2 1 27 27 F 1.39898 * 109.46808 * 60.00308 * 24 2 1 28 28 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46865 * 300.00226 * 1 2 3 30 30 H 1.09001 * 109.46704 * 60.00173 * 1 2 3 31 31 H 0.97002 * 119.99613 * 0.27717 * 6 4 2 32 32 H 1.08998 * 109.46863 * 295.59553 * 7 6 4 33 33 H 1.09003 * 109.46539 * 55.59223 * 7 6 4 34 34 H 1.00900 * 110.99877 * 170.67566 * 9 8 7 35 35 H 1.08997 * 109.47496 * 299.60078 * 10 9 8 36 36 H 1.09001 * 109.47091 * 59.59798 * 10 9 8 37 37 H 0.96993 * 120.00566 * 359.97438 * 13 11 10 38 38 H 0.97002 * 119.99947 * 180.02562 * 17 16 14 39 39 H 1.09004 * 117.49795 * 359.97438 * 22 8 7 40 40 H 1.09002 * 117.50014 * 145.01428 * 22 8 7 41 41 H 1.09002 * 117.50147 * 214.97871 * 23 8 7 42 42 H 1.08997 * 117.50126 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7023 -0.2532 -2.4545 7 6 2.1856 -0.9473 -3.6507 8 6 1.5826 -0.2961 -4.8969 9 7 0.2079 -0.7005 -5.2208 10 6 0.1488 -2.1233 -5.5814 11 6 -1.2752 -2.5028 -5.8968 12 8 -2.1543 -1.6701 -5.8275 13 7 -1.5718 -3.7679 -6.2549 14 6 -2.8671 -4.1130 -6.5424 15 1 -3.6498 -3.3713 -6.4815 16 6 -3.1730 -5.4170 -6.9120 17 7 -2.2205 -6.3194 -6.9866 18 14 -4.9380 -5.8875 -7.3030 19 1 -5.8136 -4.6986 -7.1451 20 1 -5.0205 -6.3814 -8.7010 21 1 -5.3828 -6.9565 -6.3733 22 6 2.5251 0.0016 -6.0648 23 6 1.9855 1.1473 -5.2049 24 6 2.0400 -0.7212 1.2493 25 9 3.4390 -0.7217 1.2491 26 9 1.5737 -0.0618 2.3915 27 9 1.5737 -2.0402 1.2493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1446 0.5354 -2.5435 32 1 3.2726 -0.8800 -3.6955 33 1 1.8879 -1.9950 -3.6080 34 1 -0.1746 -0.1250 -5.9560 35 1 0.7748 -2.3029 -6.4554 36 1 0.5089 -2.7249 -4.7468 37 1 -0.8688 -4.4339 -6.3099 38 1 -2.4339 -7.2297 -7.2450 39 1 3.5749 -0.2660 -5.9451 40 1 2.1251 -0.1022 -7.0734 41 1 1.2308 1.7969 -5.6483 42 1 2.6799 1.6332 -4.5195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754527099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:05 Heat of formation + Delta-G solvation = -202.428668 kcal Electronic energy + Delta-G solvation = -29563.263913 eV Core-core repulsion = 24743.030900 eV Total energy + Delta-G solvation = -4820.233013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -50.25007 -47.77880 -47.64180 -40.25563 -38.93150 -37.83221 -34.68972 -34.13236 -33.93383 -32.67822 -31.21997 -27.55420 -26.71518 -26.59433 -24.12433 -23.58516 -22.61504 -20.61559 -19.99376 -19.29387 -18.87036 -18.60759 -17.94543 -17.80992 -16.92773 -16.58898 -16.01277 -15.71554 -15.41551 -15.04119 -14.66188 -14.54930 -14.46324 -14.16417 -14.10294 -14.07523 -13.92062 -13.80923 -13.78806 -13.45148 -13.29889 -13.06206 -12.63986 -12.56535 -12.31643 -12.20094 -11.79883 -11.74638 -11.67090 -11.51704 -11.14808 -10.93668 -10.44319 -10.36567 -10.25182 -10.12163 -9.55393 -9.28718 -8.50051 -8.16365 -7.99864 -6.44606 -3.85805 2.22292 2.32347 2.77490 3.14376 3.25302 3.31903 3.44932 3.49046 3.78484 3.84729 3.90786 4.00568 4.21019 4.37267 4.40308 4.51371 4.56514 4.61528 4.74720 5.06054 5.14689 5.21974 5.25239 5.36713 5.42281 5.46758 5.61246 5.67761 5.69412 5.78766 5.87046 5.92869 6.13453 6.21287 7.03767 7.17100 7.46353 7.52486 7.86092 8.02461 8.56842 9.14317 9.50265 10.00782 10.72983 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.002691 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.786025 B =10401.162952 C =11831.533999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 H 0.138 0.862 4 C 0.520 3.480 5 O -0.523 6.523 6 N -0.706 5.706 7 C 0.167 3.833 8 C 0.036 3.964 9 N -0.626 5.626 10 C 0.049 3.951 11 C 0.440 3.560 12 O -0.585 6.585 13 N -0.561 5.561 14 C -0.300 4.300 15 H 0.104 0.896 16 C 0.023 3.977 17 N -0.900 5.900 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.204 4.204 23 C -0.166 4.166 24 C 0.473 3.527 25 F -0.175 7.175 26 F -0.182 7.182 27 F -0.169 7.169 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.407 0.593 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.355 0.645 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.393 0.607 38 H 0.272 0.728 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.828 15.373 10.719 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.184 4.184 3 H 0.156 0.844 4 C 0.304 3.696 5 O -0.399 6.399 6 N -0.357 5.357 7 C 0.043 3.957 8 C -0.058 4.058 9 N -0.257 5.257 10 C -0.083 4.083 11 C 0.225 3.775 12 O -0.470 6.470 13 N -0.198 5.198 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.245 4.245 23 C -0.204 4.204 24 C 0.418 3.582 25 F -0.156 7.156 26 F -0.164 7.164 27 F -0.151 7.151 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.242 0.758 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.175 0.825 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.522 14.853 11.461 22.016 hybrid contribution -0.182 -0.437 -1.060 1.161 sum 11.340 14.416 10.401 21.085 Atomic orbital electron populations 1.21880 0.88810 1.05298 1.05022 1.22627 1.01696 1.02800 0.91271 0.84420 1.19709 0.80867 0.84745 0.84279 1.90829 1.37332 1.25290 1.86421 1.45681 1.53276 1.32148 1.04638 1.20780 0.97336 0.96936 0.80624 1.21853 0.89843 0.98444 0.95619 1.59872 1.13988 1.03677 1.48176 1.21693 0.96775 0.89580 1.00210 1.19733 0.89445 0.83778 0.84506 1.90520 1.48699 1.49952 1.57804 1.41863 1.10029 1.08544 1.59315 1.19745 0.85202 0.95364 1.42675 0.87851 1.25279 0.99792 0.95488 0.97347 1.69623 1.32669 1.03757 1.48021 0.85799 0.81942 0.78678 0.77920 1.19204 1.20748 1.20687 1.23647 1.00377 1.03723 0.96746 1.23165 1.03335 0.90684 1.03214 1.19769 0.75856 0.78054 0.84533 1.93211 1.29373 1.96379 1.96673 1.93179 1.88570 1.80870 1.53760 1.93228 1.88232 1.36987 1.96632 0.90212 0.89953 0.89286 0.75755 0.90741 0.89948 0.82471 0.93421 0.89453 0.77420 0.91849 0.88343 0.88305 0.88087 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.84 37.16 0.33 -0.79 16 2 C -0.16 -1.35 2.71 -91.77 -0.25 -1.60 16 3 H 0.14 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.52 5.92 6.93 -10.99 -0.08 5.84 16 5 O -0.52 -8.14 14.83 5.56 0.08 -8.06 16 6 N -0.71 -6.84 5.41 -60.30 -0.33 -7.17 16 7 C 0.17 1.81 5.68 -4.04 -0.02 1.79 16 8 C 0.04 0.37 1.81 -131.61 -0.24 0.14 16 9 N -0.63 -8.89 6.29 -101.23 -0.64 -9.53 16 10 C 0.05 0.83 6.01 -4.98 -0.03 0.80 16 11 C 0.44 10.05 7.82 -10.98 -0.09 9.96 16 12 O -0.59 -15.30 15.79 5.55 0.09 -15.21 16 13 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 14 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 15 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 16 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 18 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.20 -1.84 10.07 -26.70 -0.27 -2.11 16 23 C -0.17 -1.33 9.89 -26.70 -0.26 -1.60 16 24 C 0.47 5.14 2.42 37.16 0.09 5.23 16 25 F -0.18 -2.16 16.40 2.25 0.04 -2.12 16 26 F -0.18 -1.79 16.80 2.25 0.04 -1.76 16 27 F -0.17 -2.27 15.88 2.25 0.04 -2.24 16 28 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 29 H 0.08 0.48 7.80 -51.93 -0.41 0.08 16 30 H 0.09 0.55 7.55 -51.93 -0.39 0.16 16 31 H 0.41 3.10 7.82 -40.82 -0.32 2.78 16 32 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.08 1.09 6.52 -51.93 -0.34 0.75 16 34 H 0.35 5.22 8.32 -39.29 -0.33 4.89 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.42 6.62 -51.93 -0.34 1.07 16 37 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 39 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -33.23 370.49 -5.82 -39.05 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.31 Total: 13.57 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -1.06 Total: 9.74 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.30 Total: -54.42 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.11 Total: -6.11 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.23 -5.82 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754527099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.375 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds