Wall clock time and date at job start Tue Mar 31 2020 21:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.50701 * 109.47390 * 239.99856 * 2 1 3 5 5 O 1.21275 * 119.99849 * 240.00256 * 4 2 1 6 6 N 1.34776 * 119.99785 * 59.72341 * 4 2 1 7 7 C 1.46502 * 120.00322 * 180.27478 * 6 4 2 8 8 C 1.52995 * 109.47386 * 175.59352 * 7 6 4 9 9 N 1.46903 * 115.54705 * 279.61745 * 8 7 6 10 10 C 1.46895 * 111.00087 * 294.62652 * 9 8 7 11 11 C 1.50706 * 109.47175 * 179.60081 * 10 9 8 12 12 O 1.21288 * 119.99967 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99660 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99620 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99522 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00082 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99737 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00193 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46627 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47034 * 119.99387 * 18 16 14 21 21 H 1.48496 * 109.46956 * 239.99758 * 18 16 14 22 22 C 1.52995 * 117.50035 * 133.94752 * 8 7 6 23 23 C 1.52993 * 117.49853 * 65.28610 * 8 7 6 24 24 C 1.53004 * 109.46938 * 119.99735 * 2 1 3 25 25 F 1.39900 * 109.47116 * 179.97438 * 24 2 1 26 26 F 1.39890 * 109.47302 * 300.00127 * 24 2 1 27 27 F 1.39898 * 109.46808 * 60.00308 * 24 2 1 28 28 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46865 * 300.00226 * 1 2 3 30 30 H 1.09001 * 109.46704 * 60.00173 * 1 2 3 31 31 H 0.97002 * 119.99613 * 0.27717 * 6 4 2 32 32 H 1.08998 * 109.46863 * 295.59553 * 7 6 4 33 33 H 1.09003 * 109.46539 * 55.59223 * 7 6 4 34 34 H 1.00900 * 110.99877 * 170.67566 * 9 8 7 35 35 H 1.08997 * 109.47496 * 299.60078 * 10 9 8 36 36 H 1.09001 * 109.47091 * 59.59798 * 10 9 8 37 37 H 0.96993 * 120.00566 * 359.97438 * 13 11 10 38 38 H 0.97002 * 119.99947 * 180.02562 * 17 16 14 39 39 H 1.09004 * 117.49795 * 359.97438 * 22 8 7 40 40 H 1.09002 * 117.50014 * 145.01428 * 22 8 7 41 41 H 1.09002 * 117.50147 * 214.97871 * 23 8 7 42 42 H 1.08997 * 117.50126 * 359.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7023 -0.2532 -2.4545 7 6 2.1856 -0.9473 -3.6507 8 6 1.5826 -0.2961 -4.8969 9 7 0.2079 -0.7005 -5.2208 10 6 0.1488 -2.1233 -5.5814 11 6 -1.2752 -2.5028 -5.8968 12 8 -2.1543 -1.6701 -5.8275 13 7 -1.5718 -3.7679 -6.2549 14 6 -2.8671 -4.1130 -6.5424 15 1 -3.6498 -3.3713 -6.4815 16 6 -3.1730 -5.4170 -6.9120 17 7 -2.2205 -6.3194 -6.9866 18 14 -4.9380 -5.8875 -7.3030 19 1 -5.8136 -4.6986 -7.1451 20 1 -5.0205 -6.3814 -8.7010 21 1 -5.3828 -6.9565 -6.3733 22 6 2.5251 0.0016 -6.0648 23 6 1.9855 1.1473 -5.2049 24 6 2.0400 -0.7212 1.2493 25 9 3.4390 -0.7217 1.2491 26 9 1.5737 -0.0618 2.3915 27 9 1.5737 -2.0402 1.2493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.1446 0.5354 -2.5435 32 1 3.2726 -0.8800 -3.6955 33 1 1.8879 -1.9950 -3.6080 34 1 -0.1746 -0.1250 -5.9560 35 1 0.7748 -2.3029 -6.4554 36 1 0.5089 -2.7249 -4.7468 37 1 -0.8688 -4.4339 -6.3099 38 1 -2.4339 -7.2297 -7.2450 39 1 3.5749 -0.2660 -5.9451 40 1 2.1251 -0.1022 -7.0734 41 1 1.2308 1.7969 -5.6483 42 1 2.6799 1.6332 -4.5195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754527099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:59 Heat of formation + Delta-G solvation = -228.212805 kcal Electronic energy + Delta-G solvation = -29564.381997 eV Core-core repulsion = 24743.030900 eV Total energy + Delta-G solvation = -4821.351097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.12360 -48.62413 -48.58061 -41.15797 -40.28249 -39.22453 -36.03248 -35.56033 -34.77904 -33.90802 -33.20127 -28.45860 -28.16384 -27.42974 -25.88424 -24.38719 -23.33071 -21.46731 -21.13213 -20.82839 -19.92175 -19.72996 -19.47738 -18.68374 -17.99061 -17.68543 -17.05922 -16.89206 -16.61129 -16.38860 -15.96885 -15.77522 -15.60293 -15.41173 -15.36084 -14.99828 -14.85387 -14.74824 -14.69359 -14.61496 -14.23616 -14.08776 -13.84760 -13.60358 -13.52913 -13.35920 -12.97218 -12.96835 -12.87294 -12.42308 -12.41133 -12.38421 -12.11737 -11.87533 -11.52040 -11.24576 -11.03570 -10.33260 -10.16703 -10.02862 -9.27628 -8.47772 -5.96813 1.36013 1.37605 1.41501 1.52385 1.55674 1.97910 2.03033 2.27044 2.61556 2.66058 2.97447 3.00358 3.17099 3.20013 3.42566 3.60276 3.65641 3.79844 3.82245 3.98169 4.02927 4.26571 4.44420 4.50655 4.58278 4.62444 4.64451 4.69251 4.78512 4.80515 5.02119 5.12149 5.23233 5.30723 5.40069 5.84611 6.05431 6.32944 6.40087 6.57602 7.05714 7.11014 7.54408 8.08544 8.69845 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.002691 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.786025 B =10401.162952 C =11831.533999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 H 0.181 0.819 4 C 0.516 3.484 5 O -0.572 6.572 6 N -0.693 5.693 7 C 0.169 3.831 8 C 0.020 3.980 9 N -0.634 5.634 10 C 0.067 3.933 11 C 0.440 3.560 12 O -0.620 6.620 13 N -0.574 5.574 14 C -0.332 4.332 15 H 0.081 0.919 16 C -0.014 4.014 17 N -0.921 5.921 18 Si 0.993 3.007 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.200 4.200 23 C -0.141 4.141 24 C 0.465 3.535 25 F -0.186 7.186 26 F -0.175 7.175 27 F -0.190 7.190 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.419 0.581 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.352 0.648 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.258 17.197 10.634 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 H 0.199 0.801 4 C 0.301 3.699 5 O -0.451 6.451 6 N -0.345 5.345 7 C 0.045 3.955 8 C -0.072 4.072 9 N -0.265 5.265 10 C -0.065 4.065 11 C 0.227 3.773 12 O -0.506 6.506 13 N -0.211 5.211 14 C -0.462 4.462 15 H 0.099 0.901 16 C -0.214 4.214 17 N -0.562 5.562 18 Si 0.817 3.183 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.240 4.240 23 C -0.178 4.178 24 C 0.411 3.589 25 F -0.167 7.167 26 F -0.157 7.157 27 F -0.172 7.172 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.257 0.743 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.172 0.828 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.964 16.709 11.369 23.486 hybrid contribution -0.268 -0.939 -1.009 1.404 sum 11.696 15.770 10.361 22.200 Atomic orbital electron populations 1.21921 0.87901 1.04210 1.06785 1.22685 1.02135 1.04024 0.88279 0.80136 1.20215 0.80103 0.84212 0.85377 1.90810 1.39657 1.27478 1.87141 1.45612 1.52763 1.32121 1.03981 1.20701 0.98004 0.95594 0.81217 1.21777 0.88346 1.00937 0.96189 1.59819 1.16880 1.01891 1.47924 1.21461 0.92342 0.91626 1.01105 1.20781 0.91686 0.82573 0.82260 1.90486 1.50688 1.50719 1.58708 1.41956 1.09375 1.09525 1.60239 1.19712 0.86046 0.95689 1.44745 0.90107 1.26066 1.03746 0.94949 0.96618 1.69688 1.34303 1.04121 1.48117 0.84863 0.77072 0.78161 0.78210 1.19546 1.19566 1.19806 1.23687 1.00581 1.03917 0.95848 1.23280 1.02938 0.89250 1.02349 1.20194 0.75416 0.77541 0.85797 1.93185 1.30362 1.96381 1.96791 1.93188 1.88392 1.80494 1.53613 1.93185 1.88419 1.38760 1.96793 0.92713 0.87990 0.87725 0.74284 0.89575 0.92781 0.82809 0.91568 0.88925 0.77148 0.91330 0.87011 0.88828 0.87616 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.84 71.98 0.64 -1.30 16 2 C -0.15 -2.21 2.71 -11.54 -0.03 -2.24 16 3 H 0.18 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.52 11.18 6.93 87.66 0.61 11.79 16 5 O -0.57 -17.93 14.83 -3.01 -0.04 -17.97 16 6 N -0.69 -12.18 5.41 -463.07 -2.50 -14.68 16 7 C 0.17 3.44 5.68 86.38 0.49 3.93 16 8 C 0.02 0.38 1.81 3.52 0.01 0.38 16 9 N -0.63 -17.31 6.29 -474.18 -2.98 -20.29 16 10 C 0.07 2.21 6.01 85.56 0.51 2.72 16 11 C 0.44 20.40 7.82 87.66 0.69 21.08 16 12 O -0.62 -33.03 15.79 -3.05 -0.05 -33.08 16 13 N -0.57 -29.35 5.29 -306.97 -1.62 -30.98 16 14 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 15 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 16 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 17 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 18 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 C -0.20 -3.06 10.07 30.62 0.31 -2.75 16 23 C -0.14 -1.77 9.89 30.62 0.30 -1.47 16 24 C 0.47 9.77 2.42 71.98 0.17 9.94 16 25 F -0.19 -4.50 16.40 44.97 0.74 -3.76 16 26 F -0.18 -3.21 16.80 44.97 0.76 -2.45 16 27 F -0.19 -5.20 15.88 44.97 0.71 -4.49 16 28 H 0.05 1.00 7.80 -2.39 -0.02 0.98 16 29 H 0.10 0.93 7.80 -2.39 -0.02 0.91 16 30 H 0.10 1.02 7.55 -2.39 -0.02 1.00 16 31 H 0.42 5.20 7.82 -92.71 -0.72 4.48 16 32 H 0.09 1.57 7.94 -2.39 -0.02 1.55 16 33 H 0.05 1.43 6.52 -2.39 -0.02 1.41 16 34 H 0.35 9.98 8.32 -89.69 -0.75 9.23 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 3.01 6.62 -2.39 -0.02 2.99 16 37 H 0.39 19.45 7.90 -92.71 -0.73 18.71 16 38 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.11 1.45 8.08 -2.38 -0.02 1.43 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.37 370.49 1.20 -73.17 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -1.10 Total: 35.62 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 4.97 Total: 23.82 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -6.82 Total: -115.75 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.09 Total: -51.05 kcal Atomic # 9 Polarization: -12.91 SS G_CDS: 2.21 Total: -10.71 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -74.37 1.20 -73.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754527099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.040 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds