Wall clock time and date at job start Tue Mar 31 2020 21:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47424 * 2 1 4 4 N 1.46499 * 109.46949 * 119.99714 * 2 1 3 5 5 C 1.36937 * 120.00104 * 274.99825 * 4 2 1 6 6 H 1.07995 * 120.00330 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47284 * 90.00320 * 9 7 5 11 11 H 1.48505 * 109.47545 * 210.00431 * 9 7 5 12 12 H 1.48502 * 109.47324 * 330.00420 * 9 7 5 13 13 C 1.52998 * 109.47500 * 240.00126 * 2 1 3 14 14 H 1.08991 * 109.51380 * 65.10091 * 13 2 1 15 15 C 1.53715 * 109.48488 * 185.36407 * 13 2 1 16 16 N 1.47158 * 108.16228 * 172.39835 * 15 13 2 17 17 C 1.34774 * 120.98299 * 129.43202 * 16 15 13 18 18 O 1.21595 * 119.99787 * 186.07089 * 17 16 15 19 19 C 1.47484 * 119.99928 * 6.06638 * 17 16 15 20 20 C 1.37818 * 126.77500 * 205.76189 * 19 17 16 21 21 O 1.33494 * 108.34298 * 180.02562 * 20 19 17 22 22 C 1.34883 * 109.88940 * 0.02562 * 21 20 19 23 23 C 1.46770 * 125.65374 * 179.97438 * 22 21 20 24 24 N 1.34781 * 120.00083 * 359.75490 * 23 22 21 25 25 O 1.21676 * 120.00286 * 180.02562 * 23 22 21 26 26 C 1.36054 * 108.69244 * 0.26460 * 22 21 20 27 27 C 1.47151 * 118.03316 * 309.15738 * 16 15 13 28 28 C 1.53296 * 108.38389 * 50.78380 * 27 16 15 29 29 O 1.42959 * 109.22763 * 307.69605 * 28 27 16 30 30 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47240 * 300.00238 * 1 2 3 32 32 H 1.09001 * 109.46900 * 60.00384 * 1 2 3 33 33 H 0.97002 * 119.99900 * 95.01086 * 4 2 1 34 34 H 0.96999 * 120.00199 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.83842 * 52.71444 * 15 13 2 36 36 H 1.08998 * 109.74577 * 292.02416 * 15 13 2 37 37 H 1.08004 * 125.82564 * 0.02562 * 20 19 17 38 38 H 0.96999 * 120.00024 * 180.27716 * 24 23 22 39 39 H 0.97001 * 119.99906 * 0.26684 * 24 23 22 40 40 H 1.08002 * 126.69037 * 179.73540 * 26 22 21 41 41 H 1.09001 * 109.68320 * 170.50958 * 27 16 15 42 42 H 1.09008 * 109.68164 * 291.02756 * 27 16 15 43 43 H 1.08999 * 109.51304 * 67.62564 * 28 27 16 44 44 H 1.09008 * 109.51232 * 187.77450 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4244 7 6 2.6112 -0.6619 3.5093 8 7 2.9242 -1.9389 3.4503 9 14 2.7890 0.2699 5.1186 10 1 1.5209 0.1787 5.8861 11 1 3.8933 -0.3234 5.9148 12 1 3.0940 1.6951 4.8343 13 6 2.0401 -0.7212 -1.2492 14 1 1.7537 -0.1579 -2.1372 15 6 3.5712 -0.8397 -1.1835 16 7 4.0135 -1.6926 -2.2982 17 6 4.9971 -1.2941 -3.1288 18 8 5.2735 -1.9604 -4.1077 19 6 5.7382 -0.0496 -2.8506 20 6 6.3832 0.7496 -3.7696 21 8 6.9319 1.7785 -3.1198 22 6 6.6685 1.6811 -1.8005 23 6 7.1074 2.6276 -0.7683 24 7 7.8441 3.7034 -1.1098 25 8 6.8104 2.4386 0.3964 26 6 5.9339 0.5564 -1.5844 27 6 3.3543 -2.9962 -2.4753 28 6 1.8374 -2.7749 -2.4747 29 8 1.4706 -2.0311 -1.3103 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2468 -2.3963 4.2425 35 1 3.8670 -1.2907 -0.2364 36 1 4.0214 0.1486 -1.2765 37 1 6.4357 0.5735 -4.8339 38 1 8.1376 4.3268 -0.4271 39 1 8.0809 3.8541 -2.0383 40 1 5.5685 0.1971 -0.6337 41 1 3.6607 -3.4367 -3.4241 42 1 3.6291 -3.6609 -1.6562 43 1 1.5502 -2.2191 -3.3673 44 1 1.3288 -3.7391 -2.4659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755445246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:37 Heat of formation + Delta-G solvation = -69.161623 kcal Electronic energy + Delta-G solvation = -30397.821790 eV Core-core repulsion = 26125.224410 eV Total energy + Delta-G solvation = -4272.597380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.08792 -40.16699 -39.32191 -38.29952 -35.36348 -34.81935 -34.06720 -33.33330 -32.21554 -30.34971 -30.08504 -28.39164 -27.69763 -24.53025 -24.11941 -23.83915 -23.23235 -21.79434 -20.95396 -19.69842 -19.47007 -18.11796 -17.46158 -17.26072 -16.85087 -16.62472 -16.46596 -16.15479 -15.63288 -15.33654 -14.79351 -14.62456 -14.53807 -14.38782 -14.20381 -13.68412 -13.51314 -13.34177 -13.20587 -12.94362 -12.71324 -12.28716 -11.90169 -11.74949 -11.34926 -11.23677 -10.80350 -10.76213 -10.65203 -10.48269 -10.32611 -10.26698 -10.06133 -10.01786 -9.87128 -9.72126 -9.55462 -9.01742 -8.89031 -8.37829 -6.90678 -5.70791 -2.99534 0.74232 1.43471 2.30139 2.85435 2.89976 3.10770 3.28910 3.49296 3.55178 3.56362 4.01285 4.32460 4.44219 4.63225 4.64560 4.88444 5.05509 5.11146 5.22582 5.25950 5.36499 5.39500 5.52782 5.57066 5.62670 5.67244 5.77098 5.90512 5.91563 5.95272 6.21810 6.27415 6.33641 6.40087 6.47373 6.52196 6.66943 6.79515 7.01767 7.15870 7.34719 7.48266 7.76322 7.90883 8.06942 8.47095 9.59901 10.14955 10.51780 11.51360 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.008059 B = 0.005094 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.438381 B = 5495.777239 C = 8030.680943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.059 0.941 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.009 4.009 8 N -0.930 5.930 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.065 3.935 16 N -0.602 5.602 17 C 0.592 3.408 18 O -0.549 6.549 19 C -0.239 4.239 20 C 0.069 3.931 21 O -0.156 6.156 22 C -0.087 4.087 23 C 0.606 3.394 24 N -0.846 5.846 25 O -0.502 6.502 26 C -0.087 4.087 27 C 0.078 3.922 28 C 0.049 3.951 29 O -0.359 6.359 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.225 0.775 38 H 0.410 0.590 39 H 0.405 0.595 40 H 0.181 0.819 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 7.166 -17.764 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.205 4.205 8 N -0.578 5.578 9 Si 0.734 3.266 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.207 1.207 13 C 0.018 3.982 14 H 0.073 0.927 15 C -0.056 4.056 16 N -0.334 5.334 17 C 0.381 3.619 18 O -0.429 6.429 19 C -0.244 4.244 20 C -0.004 4.004 21 O -0.050 6.050 22 C -0.138 4.138 23 C 0.390 3.610 24 N -0.410 5.410 25 O -0.378 6.378 26 C -0.108 4.108 27 C -0.045 4.045 28 C -0.029 4.029 29 O -0.277 6.277 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.224 0.776 34 H 0.064 0.936 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.241 0.759 38 H 0.242 0.758 39 H 0.234 0.766 40 H 0.199 0.801 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.558 6.831 -17.359 19.773 hybrid contribution 0.442 0.401 0.592 0.841 sum 7.000 7.232 -16.766 19.555 Atomic orbital electron populations 1.22325 0.98437 1.01664 0.99545 1.20264 0.92930 0.94537 0.85155 0.92288 1.42412 1.77674 1.10948 1.04949 1.19209 1.36640 0.93789 0.87356 0.91217 1.24692 1.02070 0.95871 0.97911 1.69661 1.50767 1.08617 1.28777 0.86248 0.77147 0.79010 0.84160 1.21886 1.21861 1.20687 1.23002 0.91146 0.84475 0.99556 0.92695 1.23198 0.96119 0.96159 0.90168 1.48020 1.35759 1.19322 1.30308 1.17194 0.79115 0.83558 0.82063 1.90759 1.67692 1.56314 1.28161 1.20631 1.08969 1.00688 0.94065 1.24938 0.92343 0.84757 0.98378 1.83912 1.59810 1.42319 1.18961 1.21881 1.09031 1.01538 0.81381 1.16521 0.78182 0.80211 0.86084 1.43658 1.56416 1.27262 1.13704 1.91053 1.55752 1.73953 1.16995 1.22470 0.95907 0.92779 0.99600 1.22369 0.93476 0.84679 1.03955 1.22900 0.93418 0.97450 0.89116 1.88112 1.70644 1.27165 1.41763 0.92422 0.92780 0.94940 0.77603 0.93588 0.87746 0.88196 0.75853 0.75848 0.76641 0.80137 0.88397 0.90045 0.93272 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.29 37.16 0.35 -2.58 16 2 C 0.18 3.52 2.81 -67.93 -0.19 3.32 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.72 -17.34 4.25 -53.43 -0.23 -17.57 16 5 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 8 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 9 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.08 1.28 2.59 -26.36 -0.07 1.21 16 14 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 15 C 0.07 1.06 4.51 -3.31 -0.01 1.05 16 16 N -0.60 -9.05 3.01 -173.26 -0.52 -9.57 16 17 C 0.59 8.91 7.66 -12.49 -0.10 8.81 16 18 O -0.55 -9.22 16.48 5.28 0.09 -9.13 16 19 C -0.24 -3.11 5.64 -104.95 -0.59 -3.70 16 20 C 0.07 0.67 12.03 30.58 0.37 1.04 16 21 O -0.16 -1.51 10.33 6.20 0.06 -1.44 16 22 C -0.09 -1.07 7.09 -36.92 -0.26 -1.33 16 23 C 0.61 7.65 8.06 -12.81 -0.10 7.55 16 24 N -0.85 -6.45 8.87 30.28 0.27 -6.18 16 25 O -0.50 -8.77 17.68 5.21 0.09 -8.67 16 26 C -0.09 -1.21 8.17 -39.03 -0.32 -1.53 16 27 C 0.08 1.07 6.65 -3.53 -0.02 1.04 16 28 C 0.05 0.65 6.98 37.31 0.26 0.91 16 29 O -0.36 -6.07 9.24 -35.23 -0.33 -6.40 16 30 H 0.06 1.12 7.56 -51.93 -0.39 0.72 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.39 10.20 7.07 -40.82 -0.29 9.91 16 34 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.10 2.03 6.94 -51.93 -0.36 1.67 16 36 H 0.10 1.54 4.26 -51.93 -0.22 1.32 16 37 H 0.23 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.41 2.53 8.93 -40.82 -0.36 2.16 16 39 H 0.40 1.97 8.57 -40.82 -0.35 1.62 16 40 H 0.18 2.84 6.30 -52.49 -0.33 2.51 16 41 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 42 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -35.02 368.52 -5.85 -40.87 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.60 Total: 13.31 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.94 Total: 8.80 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.24 Total: -60.54 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.08 Total: -25.65 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.02 -5.85 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755445246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.292 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds