Wall clock time and date at job start Tue Mar 31 2020 21:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47424 * 2 1 4 4 N 1.46499 * 109.46949 * 119.99714 * 2 1 3 5 5 C 1.36937 * 120.00104 * 274.99825 * 4 2 1 6 6 H 1.07995 * 120.00330 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00327 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47284 * 90.00320 * 9 7 5 11 11 H 1.48505 * 109.47545 * 210.00431 * 9 7 5 12 12 H 1.48502 * 109.47324 * 330.00420 * 9 7 5 13 13 C 1.52998 * 109.47500 * 240.00126 * 2 1 3 14 14 H 1.08991 * 109.51380 * 65.10091 * 13 2 1 15 15 C 1.53715 * 109.48488 * 185.36407 * 13 2 1 16 16 N 1.47158 * 108.16228 * 172.39835 * 15 13 2 17 17 C 1.34774 * 120.98299 * 129.43202 * 16 15 13 18 18 O 1.21595 * 119.99787 * 186.07089 * 17 16 15 19 19 C 1.47484 * 119.99928 * 6.06638 * 17 16 15 20 20 C 1.37818 * 126.77500 * 205.76189 * 19 17 16 21 21 O 1.33494 * 108.34298 * 180.02562 * 20 19 17 22 22 C 1.34883 * 109.88940 * 0.02562 * 21 20 19 23 23 C 1.46770 * 125.65374 * 179.97438 * 22 21 20 24 24 N 1.34781 * 120.00083 * 359.75490 * 23 22 21 25 25 O 1.21676 * 120.00286 * 180.02562 * 23 22 21 26 26 C 1.36054 * 108.69244 * 0.26460 * 22 21 20 27 27 C 1.47151 * 118.03316 * 309.15738 * 16 15 13 28 28 C 1.53296 * 108.38389 * 50.78380 * 27 16 15 29 29 O 1.42959 * 109.22763 * 307.69605 * 28 27 16 30 30 H 1.09000 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47240 * 300.00238 * 1 2 3 32 32 H 1.09001 * 109.46900 * 60.00384 * 1 2 3 33 33 H 0.97002 * 119.99900 * 95.01086 * 4 2 1 34 34 H 0.96999 * 120.00199 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.83842 * 52.71444 * 15 13 2 36 36 H 1.08998 * 109.74577 * 292.02416 * 15 13 2 37 37 H 1.08004 * 125.82564 * 0.02562 * 20 19 17 38 38 H 0.96999 * 120.00024 * 180.27716 * 24 23 22 39 39 H 0.97001 * 119.99906 * 0.26684 * 24 23 22 40 40 H 1.08002 * 126.69037 * 179.73540 * 26 22 21 41 41 H 1.09001 * 109.68320 * 170.50958 * 27 16 15 42 42 H 1.09008 * 109.68164 * 291.02756 * 27 16 15 43 43 H 1.08999 * 109.51304 * 67.62564 * 28 27 16 44 44 H 1.09008 * 109.51232 * 187.77450 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4244 7 6 2.6112 -0.6619 3.5093 8 7 2.9242 -1.9389 3.4503 9 14 2.7890 0.2699 5.1186 10 1 1.5209 0.1787 5.8861 11 1 3.8933 -0.3234 5.9148 12 1 3.0940 1.6951 4.8343 13 6 2.0401 -0.7212 -1.2492 14 1 1.7537 -0.1579 -2.1372 15 6 3.5712 -0.8397 -1.1835 16 7 4.0135 -1.6926 -2.2982 17 6 4.9971 -1.2941 -3.1288 18 8 5.2735 -1.9604 -4.1077 19 6 5.7382 -0.0496 -2.8506 20 6 6.3832 0.7496 -3.7696 21 8 6.9319 1.7785 -3.1198 22 6 6.6685 1.6811 -1.8005 23 6 7.1074 2.6276 -0.7683 24 7 7.8441 3.7034 -1.1098 25 8 6.8104 2.4386 0.3964 26 6 5.9339 0.5564 -1.5844 27 6 3.3543 -2.9962 -2.4753 28 6 1.8374 -2.7749 -2.4747 29 8 1.4706 -2.0311 -1.3103 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2468 -2.3963 4.2425 35 1 3.8670 -1.2907 -0.2364 36 1 4.0214 0.1486 -1.2765 37 1 6.4357 0.5735 -4.8339 38 1 8.1376 4.3268 -0.4271 39 1 8.0809 3.8541 -2.0383 40 1 5.5685 0.1971 -0.6337 41 1 3.6607 -3.4367 -3.4241 42 1 3.6291 -3.6609 -1.6562 43 1 1.5502 -2.2191 -3.3673 44 1 1.3288 -3.7391 -2.4659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755445246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:36 Heat of formation + Delta-G solvation = -97.727391 kcal Electronic energy + Delta-G solvation = -30399.060495 eV Core-core repulsion = 26125.224410 eV Total energy + Delta-G solvation = -4273.836085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.01412 -41.37338 -40.34938 -39.56813 -37.01336 -36.02318 -35.00974 -34.43070 -34.01128 -31.66883 -31.15765 -30.13781 -28.95055 -25.91828 -25.52650 -25.02070 -24.60778 -22.93121 -21.98078 -21.19684 -20.43982 -19.40791 -19.07682 -18.37543 -17.80501 -17.59506 -17.52787 -17.40253 -16.86688 -16.60070 -16.29002 -16.01747 -15.79824 -15.56245 -15.38681 -15.08796 -14.91767 -14.75994 -14.44402 -14.25242 -13.90535 -13.74010 -13.44677 -13.07449 -12.93037 -12.76985 -12.59292 -12.47079 -12.18060 -11.82744 -11.75992 -11.66110 -11.53481 -11.35322 -11.13400 -10.93791 -10.91947 -10.87477 -9.95438 -9.62506 -8.93089 -7.88322 -5.14791 -0.17118 0.39121 1.37943 1.47830 1.49654 1.57052 1.72583 1.86248 2.05658 2.43674 2.59447 2.79543 3.25161 3.46808 3.62766 3.64982 3.71421 3.89402 3.94355 4.04772 4.14588 4.18195 4.23515 4.30447 4.40257 4.47629 4.62071 4.70718 4.74511 4.78623 4.84950 4.86222 5.00232 5.11494 5.20392 5.28325 5.45615 5.56936 5.63934 5.74138 6.15947 6.25682 6.26583 6.33816 6.89893 7.10458 7.41177 8.16532 8.40798 9.34929 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.008059 B = 0.005094 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.438381 B = 5495.777239 C = 8030.680943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.173 3.827 3 H 0.063 0.937 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.075 0.925 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.961 3.039 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.272 1.272 13 C 0.087 3.913 14 H 0.083 0.917 15 C 0.080 3.920 16 N -0.604 5.604 17 C 0.593 3.407 18 O -0.567 6.567 19 C -0.270 4.270 20 C 0.111 3.889 21 O -0.135 6.135 22 C -0.086 4.086 23 C 0.605 3.395 24 N -0.816 5.816 25 O -0.562 6.562 26 C -0.105 4.105 27 C 0.075 3.925 28 C 0.051 3.949 29 O -0.383 6.383 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.376 0.624 34 H 0.247 0.753 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.269 0.731 38 H 0.420 0.580 39 H 0.422 0.578 40 H 0.152 0.848 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 9.037 -20.696 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 H 0.081 0.919 4 N -0.366 5.366 5 C -0.361 4.361 6 H 0.093 0.907 7 C -0.265 4.265 8 N -0.618 5.618 9 Si 0.791 3.209 10 H -0.215 1.215 11 H -0.227 1.227 12 H -0.197 1.197 13 C 0.028 3.972 14 H 0.100 0.900 15 C -0.043 4.043 16 N -0.336 5.336 17 C 0.383 3.617 18 O -0.449 6.449 19 C -0.274 4.274 20 C 0.038 3.962 21 O -0.027 6.027 22 C -0.137 4.137 23 C 0.389 3.611 24 N -0.380 5.380 25 O -0.442 6.442 26 C -0.126 4.126 27 C -0.047 4.047 28 C -0.027 4.027 29 O -0.302 6.302 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.209 0.791 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.284 0.716 38 H 0.253 0.747 39 H 0.254 0.746 40 H 0.169 0.831 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.792 8.784 -20.362 23.193 hybrid contribution 0.415 -0.140 1.324 1.395 sum 7.206 8.644 -19.038 22.115 Atomic orbital electron populations 1.22156 0.97106 1.01065 1.00500 1.20516 0.93691 0.94694 0.84661 0.91871 1.42520 1.77930 1.10409 1.05775 1.19570 1.34234 0.94014 0.88297 0.90704 1.25394 1.03370 0.96711 1.00984 1.69812 1.52925 1.10077 1.29012 0.85313 0.76679 0.78177 0.80703 1.21527 1.22735 1.19723 1.22817 0.90776 0.84812 0.98822 0.89950 1.22878 0.96257 0.96291 0.88873 1.48047 1.36114 1.19549 1.29892 1.17423 0.78703 0.83962 0.81590 1.90741 1.68170 1.57066 1.28915 1.20541 1.11180 1.01176 0.94505 1.25701 0.88640 0.82597 0.99286 1.83958 1.59116 1.42056 1.17592 1.21630 1.08876 1.00937 0.82296 1.16613 0.78252 0.80990 0.85253 1.43446 1.54014 1.25470 1.15105 1.91028 1.58390 1.75541 1.19278 1.22242 0.97219 0.94001 0.99099 1.22442 0.94136 0.84125 1.03951 1.23100 0.92871 0.98290 0.88395 1.88073 1.70881 1.27420 1.43803 0.93745 0.94373 0.91350 0.79107 0.94383 0.91849 0.87494 0.71584 0.74660 0.74575 0.83066 0.87278 0.91350 0.91505 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.29 71.98 0.67 -4.61 16 2 C 0.17 6.67 2.81 44.99 0.13 6.79 16 3 H 0.06 2.38 8.08 -2.38 -0.02 2.36 16 4 N -0.73 -36.08 4.25 -322.95 -1.37 -37.45 16 5 C -0.23 -12.72 9.93 84.03 0.83 -11.88 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 8 N -0.97 -60.41 13.06 21.65 0.28 -60.12 16 9 Si 0.96 47.80 29.55 68.60 2.03 49.83 16 10 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.09 2.81 2.59 30.83 0.08 2.89 16 14 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 15 C 0.08 2.65 4.51 86.49 0.39 3.04 16 16 N -0.60 -18.08 3.01 -820.33 -2.47 -20.55 16 17 C 0.59 17.24 7.66 86.68 0.66 17.91 16 18 O -0.57 -18.08 16.48 -4.02 -0.07 -18.15 16 19 C -0.27 -6.63 5.64 -20.08 -0.11 -6.75 16 20 C 0.11 1.75 12.03 67.72 0.81 2.56 16 21 O -0.13 -2.15 10.33 -0.73 -0.01 -2.16 16 22 C -0.09 -2.00 7.09 23.99 0.17 -1.83 16 23 C 0.60 14.94 8.06 86.47 0.70 15.63 16 24 N -0.82 -10.77 8.87 -176.33 -1.56 -12.34 16 25 O -0.56 -20.28 17.68 -4.27 -0.08 -20.36 16 26 C -0.10 -2.93 8.17 22.63 0.18 -2.75 16 27 C 0.08 2.04 6.65 86.35 0.57 2.62 16 28 C 0.05 1.25 6.98 72.08 0.50 1.75 16 29 O -0.38 -12.72 9.24 -148.98 -1.38 -14.10 16 30 H 0.04 1.69 7.56 -2.39 -0.02 1.67 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.38 20.61 7.07 -92.71 -0.66 19.95 16 34 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.06 2.65 6.94 -2.39 -0.02 2.63 16 36 H 0.11 3.39 4.26 -2.39 -0.01 3.38 16 37 H 0.27 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.42 4.37 8.93 -92.71 -0.83 3.55 16 39 H 0.42 2.77 8.57 -92.71 -0.79 1.98 16 40 H 0.15 5.17 6.30 -2.91 -0.02 5.15 16 41 H 0.11 2.71 7.06 -2.39 -0.02 2.69 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.99 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -79.15 368.52 0.25 -78.91 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -1.19 Total: 34.89 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.06 Total: 21.61 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -5.13 Total: -130.47 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -1.53 Total: -54.76 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -79.15 0.25 -78.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755445246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.821 kcal (2) G-P(sol) polarization free energy of solvation -79.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds