Wall clock time and date at job start Tue Mar 31 2020 21:14:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.46954 * 2 1
4 4 N 1.46503 * 109.47155 * 239.99626 * 2 1 3
5 5 C 1.36940 * 119.99778 * 84.99758 * 4 2 1
6 6 H 1.07996 * 119.99679 * 0.02562 * 5 4 2
7 7 C 1.38804 * 119.99897 * 180.02562 * 5 4 2
8 8 N 1.31618 * 120.00183 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 120.00152 * 180.02562 * 7 5 4
10 10 H 1.48505 * 109.46986 * 359.97438 * 9 7 5
11 11 H 1.48499 * 109.47353 * 119.99713 * 9 7 5
12 12 H 1.48496 * 109.47114 * 240.00277 * 9 7 5
13 13 C 1.53003 * 109.47250 * 119.99629 * 2 1 3
14 14 H 1.08999 * 109.51518 * 300.10556 * 13 2 1
15 15 C 1.53295 * 109.51456 * 179.97438 * 13 2 1
16 16 N 1.47145 * 108.38588 * 187.77392 * 15 13 2
17 17 C 1.34778 * 120.98343 * 230.55697 * 16 15 13
18 18 O 1.21597 * 119.99789 * 356.10824 * 17 16 15
19 19 C 1.47494 * 119.99734 * 176.10779 * 17 16 15
20 20 C 1.37811 * 126.76837 * 219.23979 * 19 17 16
21 21 O 1.33504 * 108.33967 * 179.83428 * 20 19 17
22 22 C 1.34884 * 109.88581 * 0.44474 * 21 20 19
23 23 C 1.46775 * 125.64945 * 179.72917 * 22 21 20
24 24 N 1.34770 * 120.00524 * 359.97438 * 23 22 21
25 25 O 1.21682 * 119.99355 * 179.97438 * 23 22 21
26 26 C 1.36060 * 108.69214 * 359.72492 * 22 21 20
27 27 C 1.47155 * 118.03520 * 50.54097 * 16 15 13
28 28 C 1.53302 * 108.38359 * 309.45920 * 27 16 15
29 29 O 1.42962 * 109.21901 * 52.30581 * 28 27 16
30 30 H 1.09007 * 109.47351 * 300.00083 * 1 2 3
31 31 H 1.08992 * 109.47348 * 60.00087 * 1 2 3
32 32 H 1.09006 * 109.47054 * 180.02562 * 1 2 3
33 33 H 0.97002 * 120.00026 * 264.99769 * 4 2 1
34 34 H 0.96998 * 120.00598 * 180.02562 * 8 7 5
35 35 H 1.09003 * 109.68398 * 307.50060 * 15 13 2
36 36 H 1.08999 * 109.67701 * 68.05189 * 15 13 2
37 37 H 1.08000 * 125.83413 * 359.97438 * 20 19 17
38 38 H 0.97005 * 119.99854 * 359.97438 * 24 23 22
39 39 H 0.96993 * 120.00033 * 180.02562 * 24 23 22
40 40 H 1.08001 * 126.68558 * 180.02562 * 26 22 21
41 41 H 1.08996 * 109.68611 * 69.18553 * 27 16 15
42 42 H 1.08998 * 109.68275 * 189.74243 * 27 16 15
43 43 H 1.08998 * 109.50777 * 172.22582 * 28 27 16
44 44 H 1.08996 * 109.51167 * 292.33315 * 28 27 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6907 -1.1961
5 6 2.1490 -0.0076 -2.3758
6 1 1.8925 1.0403 -2.4242
7 6 2.6112 -0.6621 -3.5092
8 7 2.9234 -1.9394 -3.4503
9 14 2.7903 0.2698 -5.1182
10 1 2.3762 1.6823 -4.9209
11 1 4.2071 0.2261 -5.5607
12 1 1.9291 -0.3580 -6.1523
13 6 2.0400 -0.7212 1.2493
14 1 1.6755 -0.2090 2.1397
15 6 3.5730 -0.7223 1.2500
16 7 4.0360 -1.5777 2.3540
17 6 4.9514 -1.1344 3.2383
18 8 5.4595 -0.0397 3.0900
19 6 5.3367 -1.9770 4.3859
20 6 5.5852 -1.5537 5.6736
21 8 5.8999 -2.6198 6.4129
22 6 5.8758 -3.7312 5.6490
23 6 6.1727 -5.0927 6.1100
24 7 6.5045 -5.3109 7.3978
25 8 6.1192 -6.0245 5.3292
26 6 5.5306 -3.3810 4.3804
27 6 3.4698 -2.9315 2.4644
28 6 1.9418 -2.8228 2.4047
29 8 1.5684 -2.0709 1.2475
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 2.2491 -1.6319 -1.1525
34 1 3.2467 -2.3967 -4.2423
35 1 3.9402 -1.1155 0.3020
36 1 3.9407 0.2937 1.3937
37 1 5.5320 -0.5339 6.0253
38 1 6.5475 -4.5680 8.0201
39 1 6.7010 -6.2106 7.7023
40 1 5.4245 -4.0437 3.5343
41 1 3.8266 -3.5471 1.6388
42 1 3.7691 -3.3785 3.4124
43 1 1.5079 -3.8210 2.3458
44 1 1.5773 -2.3195 3.3001
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001755445247.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:14:45
Heat of formation + Delta-G solvation = -72.432135 kcal
Electronic energy + Delta-G solvation = -29598.195491 eV
Core-core repulsion = 25325.456291 eV
Total energy + Delta-G solvation = -4272.739200 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 337.152 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-43.27572 -40.18493 -39.61188 -38.29200 -35.55239 -34.65164 -34.32053 -33.50551
-32.25207 -30.47295 -30.17776 -28.38436 -27.78930 -24.68465 -24.23983 -23.62930
-23.45285 -21.86605 -21.11607 -19.75909 -19.61914 -18.31415 -17.66180 -17.26942
-17.05026 -16.80945 -16.50755 -16.22304 -15.64416 -15.38038 -14.85425 -14.78713
-14.70510 -14.61660 -14.25552 -13.74113 -13.66406 -13.38399 -13.21659 -13.08405
-12.75443 -12.35921 -11.91080 -11.83691 -11.37866 -11.17706 -10.96900 -10.83276
-10.77296 -10.48869 -10.43991 -10.31808 -10.29042 -10.08908 -9.86506 -9.76750
-9.56043 -9.20445 -8.90658 -8.39391 -6.90265 -5.71445 -3.00013 0.52413
1.33932 2.10180 2.62246 2.77546 2.88102 3.11163 3.46731 3.52484
3.54545 3.99287 4.15535 4.27331 4.44438 4.62916 4.81582 4.85749
5.03835 5.06705 5.14119 5.30211 5.34370 5.40136 5.49686 5.63209
5.65196 5.72038 5.81559 5.84649 6.00343 6.07345 6.22109 6.25354
6.34526 6.42085 6.54540 6.67629 6.75201 6.79304 7.14870 7.33491
7.48207 7.60591 7.75150 8.06012 8.46699 9.59104 10.15958 10.53132
11.50794
Molecular weight = 337.15amu
Principal moments of inertia in cm(-1)
A = 0.017773 B = 0.002631 C = 0.002582
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1575.030092 B =10641.425776 C =10840.823354
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.182 3.818
3 H 0.060 0.940
4 N -0.717 5.717
5 C -0.238 4.238
6 H 0.070 0.930
7 C -0.012 4.012
8 N -0.929 5.929
9 Si 0.904 3.096
10 H -0.281 1.281
11 H -0.292 1.292
12 H -0.293 1.293
13 C 0.078 3.922
14 H 0.055 0.945
15 C 0.086 3.914
16 N -0.600 5.600
17 C 0.586 3.414
18 O -0.536 6.536
19 C -0.233 4.233
20 C 0.067 3.933
21 O -0.155 6.155
22 C -0.089 4.089
23 C 0.611 3.389
24 N -0.844 5.844
25 O -0.517 6.517
26 C -0.088 4.088
27 C 0.059 3.941
28 C 0.049 3.951
29 O -0.357 6.357
30 H 0.032 0.968
31 H 0.054 0.946
32 H 0.055 0.945
33 H 0.390 0.610
34 H 0.254 0.746
35 H 0.100 0.900
36 H 0.097 0.903
37 H 0.226 0.774
38 H 0.407 0.593
39 H 0.410 0.590
40 H 0.173 0.827
41 H 0.086 0.914
42 H 0.097 0.903
43 H 0.104 0.896
44 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.778 -4.007 26.222 26.794
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.072 3.928
3 H 0.078 0.922
4 N -0.360 5.360
5 C -0.369 4.369
6 H 0.088 0.912
7 C -0.208 4.208
8 N -0.578 5.578
9 Si 0.736 3.264
10 H -0.206 1.206
11 H -0.220 1.220
12 H -0.220 1.220
13 C 0.019 3.981
14 H 0.073 0.927
15 C -0.035 4.035
16 N -0.333 5.333
17 C 0.374 3.626
18 O -0.414 6.414
19 C -0.237 4.237
20 C -0.005 4.005
21 O -0.049 6.049
22 C -0.141 4.141
23 C 0.396 3.604
24 N -0.407 5.407
25 O -0.394 6.394
26 C -0.108 4.108
27 C -0.064 4.064
28 C -0.029 4.029
29 O -0.275 6.275
30 H 0.051 0.949
31 H 0.073 0.927
32 H 0.075 0.925
33 H 0.225 0.775
34 H 0.064 0.936
35 H 0.118 0.882
36 H 0.116 0.884
37 H 0.242 0.758
38 H 0.236 0.764
39 H 0.242 0.758
40 H 0.191 0.809
41 H 0.104 0.896
42 H 0.115 0.885
43 H 0.122 0.878
44 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 3.947 -3.894 25.510 26.105
hybrid contribution 0.376 0.213 -0.429 0.609
sum 4.322 -3.681 25.080 25.715
Atomic orbital electron populations
1.22352 0.98511 1.01573 0.99618 1.20258 0.92768 0.94637 0.85172
0.92212 1.42397 1.77642 1.11035 1.04897 1.19279 1.36453 0.93817
0.87389 0.91163 1.24720 1.02261 0.95922 0.97946 1.69679 1.50831
1.08577 1.28670 0.86161 0.77241 0.78802 0.84239 1.20606 1.21970
1.21990 1.22930 0.92074 0.83463 0.99632 0.92735 1.22510 0.95000
0.96398 0.89612 1.48048 1.40959 1.15639 1.28611 1.17216 0.79117
0.85228 0.81072 1.90815 1.53743 1.21615 1.75269 1.20694 1.12893
0.94190 0.95948 1.24958 0.95441 0.91262 0.88871 1.83922 1.67422
1.14804 1.38763 1.21795 1.14403 0.86618 0.91255 1.16488 0.76487
0.84802 0.82662 1.43669 1.72427 1.14212 1.10398 1.90974 1.52550
1.41414 1.54423 1.22160 0.97412 0.94170 0.97105 1.22873 0.95673
0.83989 1.03881 1.22884 0.92869 0.97645 0.89516 1.88120 1.75259
1.23488 1.40670 0.94893 0.92733 0.92539 0.77497 0.93643 0.88165
0.88442 0.75775 0.76377 0.75781 0.80924 0.89628 0.88512 0.87831
0.93323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.95 9.35 37.16 0.35 -2.60 16
2 C 0.18 3.59 2.73 -67.93 -0.19 3.41 16
3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16
4 N -0.72 -17.65 4.29 -53.43 -0.23 -17.88 16
5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16
6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16
8 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16
9 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16
10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
13 C 0.08 1.32 2.53 -26.58 -0.07 1.25 16
14 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
15 C 0.09 1.50 5.85 -3.54 -0.02 1.48 16
16 N -0.60 -8.87 3.02 -173.52 -0.52 -9.40 16
17 C 0.59 8.63 7.63 -12.49 -0.10 8.54 16
18 O -0.54 -9.60 16.57 5.28 0.09 -9.52 16
19 C -0.23 -2.59 5.46 -104.95 -0.57 -3.17 16
20 C 0.07 0.54 12.11 30.58 0.37 0.91 16
21 O -0.16 -1.16 10.33 6.17 0.06 -1.10 16
22 C -0.09 -0.81 7.09 -36.92 -0.26 -1.07 16
23 C 0.61 5.48 8.06 -12.81 -0.10 5.38 16
24 N -0.84 -3.91 8.87 30.28 0.27 -3.64 16
25 O -0.52 -6.56 17.68 5.21 0.09 -6.47 16
26 C -0.09 -0.91 8.14 -39.03 -0.32 -1.23 16
27 C 0.06 0.72 5.80 -3.53 -0.02 0.70 16
28 C 0.05 0.61 6.99 37.31 0.26 0.87 16
29 O -0.36 -6.05 9.22 -35.23 -0.32 -6.38 16
30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
32 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16
33 H 0.39 10.40 7.20 -40.82 -0.29 10.11 16
34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16
35 H 0.10 2.07 7.27 -51.93 -0.38 1.69 16
36 H 0.10 1.74 7.11 -51.93 -0.37 1.37 16
37 H 0.23 1.12 8.06 -52.49 -0.42 0.70 16
38 H 0.41 0.96 8.57 -40.82 -0.35 0.61 16
39 H 0.41 1.27 8.93 -40.82 -0.36 0.90 16
40 H 0.17 1.77 6.91 -52.49 -0.36 1.41 16
41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
42 H 0.10 0.97 4.17 -51.93 -0.22 0.76 16
43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16
44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
LS Contribution 370.04 15.07 5.58 5.58
Total: -1.00 -35.56 370.04 -5.86 -41.42
By element:
Atomic # 1 Polarization: 15.53 SS G_CDS: -5.66 Total: 9.88 kcal
Atomic # 6 Polarization: 8.26 SS G_CDS: -0.91 Total: 7.35 kcal
Atomic # 7 Polarization: -58.50 SS G_CDS: 0.24 Total: -58.26 kcal
Atomic # 8 Polarization: -23.38 SS G_CDS: -0.08 Total: -23.46 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -35.56 -5.86 -41.42 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755445247.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.011 kcal
(2) G-P(sol) polarization free energy of solvation -35.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.573 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds