Wall clock time and date at job start Tue Mar 31 2020 21:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46954 * 2 1 4 4 N 1.46503 * 109.47155 * 239.99626 * 2 1 3 5 5 C 1.36940 * 119.99778 * 84.99758 * 4 2 1 6 6 H 1.07996 * 119.99679 * 0.02562 * 5 4 2 7 7 C 1.38804 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00183 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00152 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46986 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47353 * 119.99713 * 9 7 5 12 12 H 1.48496 * 109.47114 * 240.00277 * 9 7 5 13 13 C 1.53003 * 109.47250 * 119.99629 * 2 1 3 14 14 H 1.08999 * 109.51518 * 300.10556 * 13 2 1 15 15 C 1.53295 * 109.51456 * 179.97438 * 13 2 1 16 16 N 1.47145 * 108.38588 * 187.77392 * 15 13 2 17 17 C 1.34778 * 120.98343 * 230.55697 * 16 15 13 18 18 O 1.21597 * 119.99789 * 356.10824 * 17 16 15 19 19 C 1.47494 * 119.99734 * 176.10779 * 17 16 15 20 20 C 1.37811 * 126.76837 * 219.23979 * 19 17 16 21 21 O 1.33504 * 108.33967 * 179.83428 * 20 19 17 22 22 C 1.34884 * 109.88581 * 0.44474 * 21 20 19 23 23 C 1.46775 * 125.64945 * 179.72917 * 22 21 20 24 24 N 1.34770 * 120.00524 * 359.97438 * 23 22 21 25 25 O 1.21682 * 119.99355 * 179.97438 * 23 22 21 26 26 C 1.36060 * 108.69214 * 359.72492 * 22 21 20 27 27 C 1.47155 * 118.03520 * 50.54097 * 16 15 13 28 28 C 1.53302 * 108.38359 * 309.45920 * 27 16 15 29 29 O 1.42962 * 109.21901 * 52.30581 * 28 27 16 30 30 H 1.09007 * 109.47351 * 300.00083 * 1 2 3 31 31 H 1.08992 * 109.47348 * 60.00087 * 1 2 3 32 32 H 1.09006 * 109.47054 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00026 * 264.99769 * 4 2 1 34 34 H 0.96998 * 120.00598 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.68398 * 307.50060 * 15 13 2 36 36 H 1.08999 * 109.67701 * 68.05189 * 15 13 2 37 37 H 1.08000 * 125.83413 * 359.97438 * 20 19 17 38 38 H 0.97005 * 119.99854 * 359.97438 * 24 23 22 39 39 H 0.96993 * 120.00033 * 180.02562 * 24 23 22 40 40 H 1.08001 * 126.68558 * 180.02562 * 26 22 21 41 41 H 1.08996 * 109.68611 * 69.18553 * 27 16 15 42 42 H 1.08998 * 109.68275 * 189.74243 * 27 16 15 43 43 H 1.08998 * 109.50777 * 172.22582 * 28 27 16 44 44 H 1.08996 * 109.51167 * 292.33315 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1490 -0.0076 -2.3758 6 1 1.8925 1.0403 -2.4242 7 6 2.6112 -0.6621 -3.5092 8 7 2.9234 -1.9394 -3.4503 9 14 2.7903 0.2698 -5.1182 10 1 2.3762 1.6823 -4.9209 11 1 4.2071 0.2261 -5.5607 12 1 1.9291 -0.3580 -6.1523 13 6 2.0400 -0.7212 1.2493 14 1 1.6755 -0.2090 2.1397 15 6 3.5730 -0.7223 1.2500 16 7 4.0360 -1.5777 2.3540 17 6 4.9514 -1.1344 3.2383 18 8 5.4595 -0.0397 3.0900 19 6 5.3367 -1.9770 4.3859 20 6 5.5852 -1.5537 5.6736 21 8 5.8999 -2.6198 6.4129 22 6 5.8758 -3.7312 5.6490 23 6 6.1727 -5.0927 6.1100 24 7 6.5045 -5.3109 7.3978 25 8 6.1192 -6.0245 5.3292 26 6 5.5306 -3.3810 4.3804 27 6 3.4698 -2.9315 2.4644 28 6 1.9418 -2.8228 2.4047 29 8 1.5684 -2.0709 1.2475 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6319 -1.1525 34 1 3.2467 -2.3967 -4.2423 35 1 3.9402 -1.1155 0.3020 36 1 3.9407 0.2937 1.3937 37 1 5.5320 -0.5339 6.0253 38 1 6.5475 -4.5680 8.0201 39 1 6.7010 -6.2106 7.7023 40 1 5.4245 -4.0437 3.5343 41 1 3.8266 -3.5471 1.6388 42 1 3.7691 -3.3785 3.4124 43 1 1.5079 -3.8210 2.3458 44 1 1.5773 -2.3195 3.3001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755445247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:45 Heat of formation + Delta-G solvation = -72.432135 kcal Electronic energy + Delta-G solvation = -29598.195491 eV Core-core repulsion = 25325.456291 eV Total energy + Delta-G solvation = -4272.739200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.27572 -40.18493 -39.61188 -38.29200 -35.55239 -34.65164 -34.32053 -33.50551 -32.25207 -30.47295 -30.17776 -28.38436 -27.78930 -24.68465 -24.23983 -23.62930 -23.45285 -21.86605 -21.11607 -19.75909 -19.61914 -18.31415 -17.66180 -17.26942 -17.05026 -16.80945 -16.50755 -16.22304 -15.64416 -15.38038 -14.85425 -14.78713 -14.70510 -14.61660 -14.25552 -13.74113 -13.66406 -13.38399 -13.21659 -13.08405 -12.75443 -12.35921 -11.91080 -11.83691 -11.37866 -11.17706 -10.96900 -10.83276 -10.77296 -10.48869 -10.43991 -10.31808 -10.29042 -10.08908 -9.86506 -9.76750 -9.56043 -9.20445 -8.90658 -8.39391 -6.90265 -5.71445 -3.00013 0.52413 1.33932 2.10180 2.62246 2.77546 2.88102 3.11163 3.46731 3.52484 3.54545 3.99287 4.15535 4.27331 4.44438 4.62916 4.81582 4.85749 5.03835 5.06705 5.14119 5.30211 5.34370 5.40136 5.49686 5.63209 5.65196 5.72038 5.81559 5.84649 6.00343 6.07345 6.22109 6.25354 6.34526 6.42085 6.54540 6.67629 6.75201 6.79304 7.14870 7.33491 7.48207 7.60591 7.75150 8.06012 8.46699 9.59104 10.15958 10.53132 11.50794 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.002631 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.030092 B =10641.425776 C =10840.823354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.086 3.914 16 N -0.600 5.600 17 C 0.586 3.414 18 O -0.536 6.536 19 C -0.233 4.233 20 C 0.067 3.933 21 O -0.155 6.155 22 C -0.089 4.089 23 C 0.611 3.389 24 N -0.844 5.844 25 O -0.517 6.517 26 C -0.088 4.088 27 C 0.059 3.941 28 C 0.049 3.951 29 O -0.357 6.357 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.390 0.610 34 H 0.254 0.746 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.226 0.774 38 H 0.407 0.593 39 H 0.410 0.590 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 -4.007 26.222 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.035 4.035 16 N -0.333 5.333 17 C 0.374 3.626 18 O -0.414 6.414 19 C -0.237 4.237 20 C -0.005 4.005 21 O -0.049 6.049 22 C -0.141 4.141 23 C 0.396 3.604 24 N -0.407 5.407 25 O -0.394 6.394 26 C -0.108 4.108 27 C -0.064 4.064 28 C -0.029 4.029 29 O -0.275 6.275 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.242 0.758 38 H 0.236 0.764 39 H 0.242 0.758 40 H 0.191 0.809 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.947 -3.894 25.510 26.105 hybrid contribution 0.376 0.213 -0.429 0.609 sum 4.322 -3.681 25.080 25.715 Atomic orbital electron populations 1.22352 0.98511 1.01573 0.99618 1.20258 0.92768 0.94637 0.85172 0.92212 1.42397 1.77642 1.11035 1.04897 1.19279 1.36453 0.93817 0.87389 0.91163 1.24720 1.02261 0.95922 0.97946 1.69679 1.50831 1.08577 1.28670 0.86161 0.77241 0.78802 0.84239 1.20606 1.21970 1.21990 1.22930 0.92074 0.83463 0.99632 0.92735 1.22510 0.95000 0.96398 0.89612 1.48048 1.40959 1.15639 1.28611 1.17216 0.79117 0.85228 0.81072 1.90815 1.53743 1.21615 1.75269 1.20694 1.12893 0.94190 0.95948 1.24958 0.95441 0.91262 0.88871 1.83922 1.67422 1.14804 1.38763 1.21795 1.14403 0.86618 0.91255 1.16488 0.76487 0.84802 0.82662 1.43669 1.72427 1.14212 1.10398 1.90974 1.52550 1.41414 1.54423 1.22160 0.97412 0.94170 0.97105 1.22873 0.95673 0.83989 1.03881 1.22884 0.92869 0.97645 0.89516 1.88120 1.75259 1.23488 1.40670 0.94893 0.92733 0.92539 0.77497 0.93643 0.88165 0.88442 0.75775 0.76377 0.75781 0.80924 0.89628 0.88512 0.87831 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.35 37.16 0.35 -2.60 16 2 C 0.18 3.59 2.73 -67.93 -0.19 3.41 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -17.65 4.29 -53.43 -0.23 -17.88 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 9 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 C 0.08 1.32 2.53 -26.58 -0.07 1.25 16 14 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.09 1.50 5.85 -3.54 -0.02 1.48 16 16 N -0.60 -8.87 3.02 -173.52 -0.52 -9.40 16 17 C 0.59 8.63 7.63 -12.49 -0.10 8.54 16 18 O -0.54 -9.60 16.57 5.28 0.09 -9.52 16 19 C -0.23 -2.59 5.46 -104.95 -0.57 -3.17 16 20 C 0.07 0.54 12.11 30.58 0.37 0.91 16 21 O -0.16 -1.16 10.33 6.17 0.06 -1.10 16 22 C -0.09 -0.81 7.09 -36.92 -0.26 -1.07 16 23 C 0.61 5.48 8.06 -12.81 -0.10 5.38 16 24 N -0.84 -3.91 8.87 30.28 0.27 -3.64 16 25 O -0.52 -6.56 17.68 5.21 0.09 -6.47 16 26 C -0.09 -0.91 8.14 -39.03 -0.32 -1.23 16 27 C 0.06 0.72 5.80 -3.53 -0.02 0.70 16 28 C 0.05 0.61 6.99 37.31 0.26 0.87 16 29 O -0.36 -6.05 9.22 -35.23 -0.32 -6.38 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.09 7.69 -51.93 -0.40 0.69 16 33 H 0.39 10.40 7.20 -40.82 -0.29 10.11 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.10 2.07 7.27 -51.93 -0.38 1.69 16 36 H 0.10 1.74 7.11 -51.93 -0.37 1.37 16 37 H 0.23 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.41 0.96 8.57 -40.82 -0.35 0.61 16 39 H 0.41 1.27 8.93 -40.82 -0.36 0.90 16 40 H 0.17 1.77 6.91 -52.49 -0.36 1.41 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 0.97 4.17 -51.93 -0.22 0.76 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -35.56 370.04 -5.86 -41.42 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.66 Total: 9.88 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.91 Total: 7.35 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.24 Total: -58.26 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.08 Total: -23.46 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.56 -5.86 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755445247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.011 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds