Wall clock time and date at job start Tue Mar 31 2020 21:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46954 * 2 1 4 4 N 1.46503 * 109.47155 * 239.99626 * 2 1 3 5 5 C 1.36940 * 119.99778 * 84.99758 * 4 2 1 6 6 H 1.07996 * 119.99679 * 0.02562 * 5 4 2 7 7 C 1.38804 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00183 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00152 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46986 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47353 * 119.99713 * 9 7 5 12 12 H 1.48496 * 109.47114 * 240.00277 * 9 7 5 13 13 C 1.53003 * 109.47250 * 119.99629 * 2 1 3 14 14 H 1.08999 * 109.51518 * 300.10556 * 13 2 1 15 15 C 1.53295 * 109.51456 * 179.97438 * 13 2 1 16 16 N 1.47145 * 108.38588 * 187.77392 * 15 13 2 17 17 C 1.34778 * 120.98343 * 230.55697 * 16 15 13 18 18 O 1.21597 * 119.99789 * 356.10824 * 17 16 15 19 19 C 1.47494 * 119.99734 * 176.10779 * 17 16 15 20 20 C 1.37811 * 126.76837 * 219.23979 * 19 17 16 21 21 O 1.33504 * 108.33967 * 179.83428 * 20 19 17 22 22 C 1.34884 * 109.88581 * 0.44474 * 21 20 19 23 23 C 1.46775 * 125.64945 * 179.72917 * 22 21 20 24 24 N 1.34770 * 120.00524 * 359.97438 * 23 22 21 25 25 O 1.21682 * 119.99355 * 179.97438 * 23 22 21 26 26 C 1.36060 * 108.69214 * 359.72492 * 22 21 20 27 27 C 1.47155 * 118.03520 * 50.54097 * 16 15 13 28 28 C 1.53302 * 108.38359 * 309.45920 * 27 16 15 29 29 O 1.42962 * 109.21901 * 52.30581 * 28 27 16 30 30 H 1.09007 * 109.47351 * 300.00083 * 1 2 3 31 31 H 1.08992 * 109.47348 * 60.00087 * 1 2 3 32 32 H 1.09006 * 109.47054 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00026 * 264.99769 * 4 2 1 34 34 H 0.96998 * 120.00598 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.68398 * 307.50060 * 15 13 2 36 36 H 1.08999 * 109.67701 * 68.05189 * 15 13 2 37 37 H 1.08000 * 125.83413 * 359.97438 * 20 19 17 38 38 H 0.97005 * 119.99854 * 359.97438 * 24 23 22 39 39 H 0.96993 * 120.00033 * 180.02562 * 24 23 22 40 40 H 1.08001 * 126.68558 * 180.02562 * 26 22 21 41 41 H 1.08996 * 109.68611 * 69.18553 * 27 16 15 42 42 H 1.08998 * 109.68275 * 189.74243 * 27 16 15 43 43 H 1.08998 * 109.50777 * 172.22582 * 28 27 16 44 44 H 1.08996 * 109.51167 * 292.33315 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1490 -0.0076 -2.3758 6 1 1.8925 1.0403 -2.4242 7 6 2.6112 -0.6621 -3.5092 8 7 2.9234 -1.9394 -3.4503 9 14 2.7903 0.2698 -5.1182 10 1 2.3762 1.6823 -4.9209 11 1 4.2071 0.2261 -5.5607 12 1 1.9291 -0.3580 -6.1523 13 6 2.0400 -0.7212 1.2493 14 1 1.6755 -0.2090 2.1397 15 6 3.5730 -0.7223 1.2500 16 7 4.0360 -1.5777 2.3540 17 6 4.9514 -1.1344 3.2383 18 8 5.4595 -0.0397 3.0900 19 6 5.3367 -1.9770 4.3859 20 6 5.5852 -1.5537 5.6736 21 8 5.8999 -2.6198 6.4129 22 6 5.8758 -3.7312 5.6490 23 6 6.1727 -5.0927 6.1100 24 7 6.5045 -5.3109 7.3978 25 8 6.1192 -6.0245 5.3292 26 6 5.5306 -3.3810 4.3804 27 6 3.4698 -2.9315 2.4644 28 6 1.9418 -2.8228 2.4047 29 8 1.5684 -2.0709 1.2475 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6319 -1.1525 34 1 3.2467 -2.3967 -4.2423 35 1 3.9402 -1.1155 0.3020 36 1 3.9407 0.2937 1.3937 37 1 5.5320 -0.5339 6.0253 38 1 6.5475 -4.5680 8.0201 39 1 6.7010 -6.2106 7.7023 40 1 5.4245 -4.0437 3.5343 41 1 3.8266 -3.5471 1.6388 42 1 3.7691 -3.3785 3.4124 43 1 1.5079 -3.8210 2.3458 44 1 1.5773 -2.3195 3.3001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755445247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:44 Heat of formation + Delta-G solvation = -101.507248 kcal Electronic energy + Delta-G solvation = -29599.456283 eV Core-core repulsion = 25325.456291 eV Total energy + Delta-G solvation = -4273.999992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.00286 -41.37706 -40.33113 -39.55521 -37.12579 -35.92370 -34.99886 -34.38834 -34.06283 -31.66970 -31.18098 -30.13506 -28.99612 -26.10542 -25.31605 -25.00582 -24.54745 -22.93720 -22.00693 -21.21827 -20.42826 -19.45831 -19.09398 -18.38726 -17.83662 -17.58204 -17.47915 -17.35898 -16.87086 -16.62294 -16.29559 -15.98941 -15.82054 -15.55229 -15.40421 -15.11124 -14.96543 -14.65124 -14.44119 -14.32848 -13.96604 -13.70744 -13.46928 -13.10617 -12.97254 -12.79735 -12.54598 -12.49030 -12.12516 -11.83727 -11.75385 -11.67459 -11.58450 -11.34442 -11.13220 -10.95873 -10.92052 -10.86212 -9.94097 -9.64478 -8.94091 -7.88953 -5.16136 -0.16625 0.47043 1.38997 1.48219 1.48494 1.58200 1.66646 1.82603 2.00808 2.44745 2.58406 2.78979 3.27784 3.45027 3.63489 3.66122 3.72327 3.93433 3.95414 3.97939 4.12831 4.16551 4.23266 4.31573 4.33968 4.52658 4.61933 4.70732 4.74879 4.79425 4.84639 4.86013 5.00290 5.10471 5.19446 5.26590 5.44938 5.55473 5.62577 5.74616 6.19979 6.25613 6.26028 6.33724 6.90597 7.08824 7.39810 8.16334 8.40978 9.34498 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.002631 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.030092 B =10641.425776 C =10840.823354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.172 3.828 3 H 0.062 0.938 4 N -0.727 5.727 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.298 1.298 12 H -0.296 1.296 13 C 0.093 3.907 14 H 0.082 0.918 15 C 0.095 3.905 16 N -0.602 5.602 17 C 0.586 3.414 18 O -0.575 6.575 19 C -0.262 4.262 20 C 0.102 3.898 21 O -0.137 6.137 22 C -0.085 4.085 23 C 0.610 3.390 24 N -0.818 5.818 25 O -0.561 6.561 26 C -0.099 4.099 27 C 0.061 3.939 28 C 0.045 3.955 29 O -0.383 6.383 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.377 0.623 34 H 0.248 0.752 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.260 0.740 38 H 0.421 0.579 39 H 0.421 0.579 40 H 0.167 0.833 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -3.336 29.415 29.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 H 0.080 0.920 4 N -0.368 5.368 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.619 5.619 9 Si 0.797 3.203 10 H -0.190 1.190 11 H -0.225 1.225 12 H -0.224 1.224 13 C 0.033 3.967 14 H 0.100 0.900 15 C -0.028 4.028 16 N -0.334 5.334 17 C 0.377 3.623 18 O -0.456 6.456 19 C -0.266 4.266 20 C 0.029 3.971 21 O -0.029 6.029 22 C -0.136 4.136 23 C 0.394 3.606 24 N -0.382 5.382 25 O -0.442 6.442 26 C -0.120 4.120 27 C -0.061 4.061 28 C -0.032 4.032 29 O -0.302 6.302 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.209 0.791 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.276 0.724 38 H 0.253 0.747 39 H 0.254 0.746 40 H 0.184 0.816 41 H 0.089 0.911 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.531 -3.203 28.804 29.196 hybrid contribution 0.527 0.019 -1.234 1.342 sum 4.058 -3.184 27.570 28.048 Atomic orbital electron populations 1.22173 0.96934 1.01088 1.00632 1.20524 0.93721 0.94698 0.84707 0.92019 1.42522 1.77955 1.10504 1.05796 1.19664 1.34259 0.94113 0.88305 0.90529 1.25482 1.03423 0.96818 1.01222 1.69838 1.52898 1.10142 1.29040 0.85156 0.76516 0.78317 0.80305 1.18961 1.22547 1.22377 1.22661 0.91160 0.83952 0.98880 0.90020 1.22138 0.95691 0.96035 0.88888 1.48080 1.41197 1.16161 1.27925 1.17669 0.78094 0.85050 0.81527 1.90786 1.54963 1.23525 1.76325 1.20403 1.16091 0.94139 0.95997 1.25560 0.91793 0.92243 0.87540 1.83971 1.66687 1.14314 1.37973 1.21710 1.13970 0.87093 0.90839 1.16506 0.76419 0.84168 0.83467 1.43506 1.70146 1.15477 1.09062 1.90961 1.54849 1.42531 1.55833 1.22116 0.98291 0.93886 0.97712 1.22986 0.95743 0.82637 1.04747 1.23166 0.92752 0.98414 0.88837 1.88077 1.75490 1.23549 1.43066 0.91232 0.94280 0.93713 0.79053 0.94357 0.92333 0.89391 0.72408 0.74678 0.74576 0.81585 0.91070 0.85861 0.85719 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.35 71.98 0.67 -4.61 16 2 C 0.17 6.77 2.73 44.99 0.12 6.89 16 3 H 0.06 2.39 8.08 -2.39 -0.02 2.37 16 4 N -0.73 -36.69 4.29 -322.94 -1.39 -38.08 16 5 C -0.23 -12.88 9.93 84.03 0.83 -12.04 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 8 N -0.97 -60.51 13.06 21.65 0.28 -60.22 16 9 Si 0.97 47.26 29.55 68.60 2.03 49.28 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 13 C 0.09 3.07 2.53 30.69 0.08 3.15 16 14 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 15 C 0.10 3.41 5.85 86.36 0.51 3.91 16 16 N -0.60 -17.86 3.02 -821.15 -2.48 -20.34 16 17 C 0.59 17.05 7.63 86.68 0.66 17.71 16 18 O -0.58 -20.63 16.57 -4.02 -0.07 -20.70 16 19 C -0.26 -5.40 5.46 -20.08 -0.11 -5.51 16 20 C 0.10 1.30 12.11 67.72 0.82 2.12 16 21 O -0.14 -1.56 10.33 -0.83 -0.01 -1.57 16 22 C -0.08 -1.35 7.09 24.00 0.17 -1.18 16 23 C 0.61 9.84 8.06 86.48 0.70 10.54 16 24 N -0.82 -5.38 8.87 -176.33 -1.56 -6.94 16 25 O -0.56 -13.91 17.68 -4.29 -0.08 -13.98 16 26 C -0.10 -1.94 8.14 22.62 0.18 -1.76 16 27 C 0.06 1.47 5.80 86.36 0.50 1.97 16 28 C 0.05 1.06 6.99 72.08 0.50 1.56 16 29 O -0.38 -12.75 9.22 -148.98 -1.37 -14.13 16 30 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.69 7.69 -2.38 -0.02 1.67 16 33 H 0.38 20.93 7.20 -92.71 -0.67 20.26 16 34 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.06 2.58 7.27 -2.39 -0.02 2.56 16 36 H 0.09 3.26 7.11 -2.39 -0.02 3.24 16 37 H 0.26 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.42 0.53 8.57 -92.70 -0.79 -0.27 16 39 H 0.42 1.54 8.93 -92.71 -0.83 0.71 16 40 H 0.17 3.41 6.91 -2.91 -0.02 3.39 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.12 2.34 4.17 -2.39 -0.01 2.33 16 43 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.13 370.04 0.26 -79.87 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -1.20 Total: 28.11 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 6.11 Total: 18.71 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.15 Total: -125.59 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -1.52 Total: -50.38 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -80.13 0.26 -79.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755445247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.640 kcal (2) G-P(sol) polarization free energy of solvation -80.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds