Wall clock time and date at job start Tue Mar 31 2020 21:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46629 * 2 1 4 4 N 1.46502 * 109.47328 * 120.00179 * 2 1 3 5 5 C 1.36940 * 119.99480 * 275.00252 * 4 2 1 6 6 H 1.07993 * 120.00495 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99226 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99310 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00161 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47272 * 89.99797 * 9 7 5 11 11 H 1.48506 * 109.47060 * 209.99695 * 9 7 5 12 12 H 1.48497 * 109.47483 * 330.00118 * 9 7 5 13 13 C 1.53002 * 109.46867 * 240.00420 * 2 1 3 14 14 H 1.09003 * 109.50855 * 184.89274 * 13 2 1 15 15 C 1.53296 * 109.51482 * 64.74306 * 13 2 1 16 16 N 1.47145 * 108.38429 * 187.77039 * 15 13 2 17 17 C 1.34774 * 120.98474 * 230.51083 * 16 15 13 18 18 O 1.21595 * 119.99715 * 356.13409 * 17 16 15 19 19 C 1.47488 * 120.00212 * 176.13043 * 17 16 15 20 20 C 1.37817 * 126.77342 * 219.24332 * 19 17 16 21 21 O 1.33494 * 108.34027 * 179.82944 * 20 19 17 22 22 C 1.34892 * 109.89070 * 0.44176 * 21 20 19 23 23 C 1.46772 * 125.65469 * 179.72990 * 22 21 20 24 24 N 1.34775 * 120.00026 * 359.97438 * 23 22 21 25 25 O 1.21679 * 119.99602 * 180.02562 * 23 22 21 26 26 C 1.36059 * 108.68557 * 359.72519 * 22 21 20 27 27 C 1.47155 * 118.03616 * 50.53737 * 16 15 13 28 28 C 1.53298 * 108.38156 * 309.46442 * 27 16 15 29 29 O 1.42959 * 109.50898 * 304.99416 * 13 2 1 30 30 H 1.09001 * 109.47634 * 59.99906 * 1 2 3 31 31 H 1.09007 * 109.47278 * 299.99571 * 1 2 3 32 32 H 1.09007 * 109.46969 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99969 * 94.99754 * 4 2 1 34 34 H 0.97002 * 119.99111 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.67836 * 307.49778 * 15 13 2 36 36 H 1.09000 * 109.67706 * 68.04439 * 15 13 2 37 37 H 1.07998 * 125.82745 * 359.97438 * 20 19 17 38 38 H 0.97000 * 119.99961 * 0.02562 * 24 23 22 39 39 H 0.97004 * 119.99945 * 180.02562 * 24 23 22 40 40 H 1.08003 * 126.68378 * 180.02562 * 26 22 21 41 41 H 1.08994 * 109.68619 * 189.74030 * 27 16 15 42 42 H 1.09001 * 109.67876 * 69.18108 * 27 16 15 43 43 H 1.08998 * 109.51220 * 292.37326 * 28 27 16 44 44 H 1.09006 * 109.55281 * 172.24873 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6114 -0.6621 3.5093 8 7 2.7375 -0.0053 4.6429 9 14 3.0544 -2.4748 3.4256 10 1 4.4870 -2.6180 3.0617 11 1 2.8144 -3.1045 4.7489 12 1 2.2140 -3.1429 2.3997 13 6 2.0400 -0.7212 -1.2493 14 1 3.1265 -0.7981 -1.2073 15 6 1.6294 0.0665 -2.4987 16 7 1.9646 -0.7371 -3.6849 17 6 2.6671 -0.2074 -4.7059 18 8 2.9731 0.9692 -4.6874 19 6 3.0648 -1.0550 -5.8455 20 6 4.2647 -1.0175 -6.5224 21 8 4.2339 -1.9435 -7.4835 22 6 3.0464 -2.5832 -7.4665 23 6 2.6417 -3.6602 -8.3778 24 7 3.4894 -4.0875 -9.3346 25 8 1.5406 -4.1667 -8.2701 26 6 2.2862 -2.0646 -6.4644 27 6 1.5097 -2.1360 -3.7238 28 6 1.9261 -2.8163 -2.4147 29 8 1.4705 -2.0310 -1.3103 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1526 34 1 3.0609 -0.4626 5.4349 35 1 0.5565 0.2577 -2.4760 36 1 2.1706 1.0120 -2.5308 37 1 5.0899 -0.3541 -6.3099 38 1 4.3670 -3.6835 -9.4206 39 1 3.2218 -4.7991 -9.9371 40 1 1.2846 -2.3642 -6.1932 41 1 1.9717 -2.6491 -4.5672 42 1 0.4248 -2.1665 -3.8244 43 1 3.0122 -2.9009 -2.3778 44 1 1.4816 -3.8103 -2.3626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755445249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:59 Heat of formation + Delta-G solvation = -68.407817 kcal Electronic energy + Delta-G solvation = -29421.652040 eV Core-core repulsion = 25149.087348 eV Total energy + Delta-G solvation = -4272.564693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.40868 -40.42249 -39.72590 -38.50161 -35.77822 -34.82446 -34.44485 -33.68533 -32.44181 -30.68224 -30.52794 -28.88817 -27.56813 -25.15047 -24.39713 -23.84199 -23.29118 -21.90027 -21.24084 -19.88834 -19.75415 -18.51480 -17.86321 -17.59117 -17.19210 -16.93738 -16.65935 -16.45318 -15.87943 -15.50818 -15.16204 -14.94789 -14.82613 -14.65893 -14.45803 -14.09057 -13.82562 -13.52000 -13.27951 -12.99547 -12.81758 -12.68444 -12.34669 -12.13175 -11.62725 -11.28712 -11.08700 -10.94665 -10.78670 -10.67695 -10.60570 -10.42994 -10.39974 -10.15425 -9.97666 -9.93916 -9.56624 -9.33382 -8.91868 -8.64658 -7.24966 -5.74657 -3.09776 0.40378 1.18512 1.98134 2.47297 2.54883 2.73519 2.96211 3.40705 3.46973 3.48172 3.81926 3.99813 4.13628 4.29600 4.57810 4.62769 4.68817 4.83233 4.89100 4.96849 5.01171 5.19674 5.21577 5.31418 5.49753 5.53309 5.54286 5.58687 5.67365 5.71557 5.86703 5.95334 6.10067 6.14766 6.22251 6.34169 6.48216 6.64779 6.74589 7.05613 7.09275 7.30449 7.49788 7.83675 8.01661 8.44612 9.23813 9.96152 10.17059 11.43545 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.002544 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.193295 B =11001.616520 C =11421.162703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.069 0.931 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.072 3.928 14 H 0.065 0.935 15 C 0.084 3.916 16 N -0.603 5.603 17 C 0.589 3.411 18 O -0.533 6.533 19 C -0.237 4.237 20 C 0.072 3.928 21 O -0.154 6.154 22 C -0.088 4.088 23 C 0.611 3.389 24 N -0.843 5.843 25 O -0.518 6.518 26 C -0.090 4.090 27 C 0.060 3.940 28 C 0.045 3.955 29 O -0.362 6.362 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.227 0.773 38 H 0.408 0.592 39 H 0.411 0.589 40 H 0.173 0.827 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -7.568 -30.321 31.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.087 0.913 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.712 3.288 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.012 3.988 14 H 0.083 0.917 15 C -0.038 4.038 16 N -0.336 5.336 17 C 0.377 3.623 18 O -0.410 6.410 19 C -0.241 4.241 20 C 0.000 4.000 21 O -0.047 6.047 22 C -0.139 4.139 23 C 0.396 3.604 24 N -0.406 5.406 25 O -0.395 6.395 26 C -0.110 4.110 27 C -0.062 4.062 28 C -0.033 4.033 29 O -0.280 6.280 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.243 0.757 38 H 0.237 0.763 39 H 0.243 0.757 40 H 0.190 0.810 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.203 -7.129 -29.986 30.900 hybrid contribution 0.747 -1.331 -0.277 1.551 sum 2.950 -8.459 -30.262 31.561 Atomic orbital electron populations 1.22393 0.98119 1.01695 1.00140 1.20170 0.93043 0.94877 0.83878 0.91300 1.42706 1.79583 1.09630 1.06751 1.19078 1.36901 0.95509 0.85728 0.89135 1.24655 1.01441 0.97494 0.95523 1.69707 1.52648 1.35579 1.00253 0.86566 0.78412 0.86919 0.76869 1.21252 1.21831 1.19891 1.23042 0.97689 0.83056 0.94988 0.91711 1.22533 1.02428 0.95724 0.83116 1.47986 1.54183 1.12819 1.18577 1.17216 0.77740 0.86267 0.81059 1.90827 1.55689 1.15586 1.78931 1.20633 0.97238 1.03393 1.02856 1.25007 0.99045 0.90247 0.85750 1.83938 1.34230 1.40212 1.46369 1.21814 0.86194 1.02128 1.03749 1.16483 0.84294 0.80197 0.79455 1.43678 1.19660 1.41835 1.35430 1.90965 1.20615 1.56577 1.71372 1.22108 1.01128 0.94114 0.93678 1.22876 1.01088 0.81785 1.00501 1.22929 0.99458 0.95290 0.85587 1.88091 1.67923 1.25744 1.46204 0.94297 0.92362 0.92521 0.80082 0.93105 0.89650 0.87822 0.75662 0.76306 0.75717 0.81008 0.88234 0.89950 0.92859 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.06 37.16 0.34 -2.55 16 2 C 0.19 3.61 2.77 -67.93 -0.19 3.43 16 3 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 4 N -0.74 -17.68 4.91 -53.42 -0.26 -17.94 16 5 C -0.24 -6.82 10.41 -15.05 -0.16 -6.97 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 7 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 9 Si 0.88 22.39 27.73 -169.99 -4.71 17.67 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.63 6.52 56.52 0.37 -6.26 16 13 C 0.07 1.13 2.61 -26.58 -0.07 1.06 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.08 1.14 5.81 -3.54 -0.02 1.12 16 16 N -0.60 -7.29 3.02 -173.53 -0.52 -7.81 16 17 C 0.59 7.40 7.62 -12.49 -0.10 7.30 16 18 O -0.53 -8.36 16.57 5.28 0.09 -8.27 16 19 C -0.24 -2.25 5.46 -104.95 -0.57 -2.82 16 20 C 0.07 0.51 12.11 30.58 0.37 0.88 16 21 O -0.15 -1.00 10.33 6.17 0.06 -0.94 16 22 C -0.09 -0.68 7.09 -36.92 -0.26 -0.94 16 23 C 0.61 4.76 8.06 -12.81 -0.10 4.66 16 24 N -0.84 -3.15 8.87 30.28 0.27 -2.88 16 25 O -0.52 -5.87 17.68 5.21 0.09 -5.78 16 26 C -0.09 -0.77 8.14 -39.03 -0.32 -1.09 16 27 C 0.06 0.59 5.80 -3.53 -0.02 0.57 16 28 C 0.05 0.52 6.98 37.31 0.26 0.78 16 29 O -0.36 -5.63 9.24 -35.23 -0.33 -5.96 16 30 H 0.04 0.57 6.41 -51.93 -0.33 0.23 16 31 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.06 1.03 7.56 -51.93 -0.39 0.64 16 33 H 0.37 8.77 5.44 -40.82 -0.22 8.55 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.09 1.11 6.26 -51.93 -0.33 0.78 16 36 H 0.10 1.47 7.11 -51.93 -0.37 1.11 16 37 H 0.23 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.41 0.65 8.57 -40.82 -0.35 0.30 16 39 H 0.41 0.92 8.93 -40.82 -0.36 0.56 16 40 H 0.17 1.36 6.91 -52.48 -0.36 1.00 16 41 H 0.10 0.81 4.18 -51.93 -0.22 0.59 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -36.96 365.06 -5.45 -42.42 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.48 Total: 7.18 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.93 Total: 5.46 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.26 Total: -57.30 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.08 Total: -20.94 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.96 -5.45 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755445249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.990 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds