Wall clock time and date at job start Tue Mar 31 2020 21:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46629 * 2 1 4 4 N 1.46502 * 109.47328 * 120.00179 * 2 1 3 5 5 C 1.36940 * 119.99480 * 275.00252 * 4 2 1 6 6 H 1.07993 * 120.00495 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99226 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99310 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00161 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47272 * 89.99797 * 9 7 5 11 11 H 1.48506 * 109.47060 * 209.99695 * 9 7 5 12 12 H 1.48497 * 109.47483 * 330.00118 * 9 7 5 13 13 C 1.53002 * 109.46867 * 240.00420 * 2 1 3 14 14 H 1.09003 * 109.50855 * 184.89274 * 13 2 1 15 15 C 1.53296 * 109.51482 * 64.74306 * 13 2 1 16 16 N 1.47145 * 108.38429 * 187.77039 * 15 13 2 17 17 C 1.34774 * 120.98474 * 230.51083 * 16 15 13 18 18 O 1.21595 * 119.99715 * 356.13409 * 17 16 15 19 19 C 1.47488 * 120.00212 * 176.13043 * 17 16 15 20 20 C 1.37817 * 126.77342 * 219.24332 * 19 17 16 21 21 O 1.33494 * 108.34027 * 179.82944 * 20 19 17 22 22 C 1.34892 * 109.89070 * 0.44176 * 21 20 19 23 23 C 1.46772 * 125.65469 * 179.72990 * 22 21 20 24 24 N 1.34775 * 120.00026 * 359.97438 * 23 22 21 25 25 O 1.21679 * 119.99602 * 180.02562 * 23 22 21 26 26 C 1.36059 * 108.68557 * 359.72519 * 22 21 20 27 27 C 1.47155 * 118.03616 * 50.53737 * 16 15 13 28 28 C 1.53298 * 108.38156 * 309.46442 * 27 16 15 29 29 O 1.42959 * 109.50898 * 304.99416 * 13 2 1 30 30 H 1.09001 * 109.47634 * 59.99906 * 1 2 3 31 31 H 1.09007 * 109.47278 * 299.99571 * 1 2 3 32 32 H 1.09007 * 109.46969 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99969 * 94.99754 * 4 2 1 34 34 H 0.97002 * 119.99111 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.67836 * 307.49778 * 15 13 2 36 36 H 1.09000 * 109.67706 * 68.04439 * 15 13 2 37 37 H 1.07998 * 125.82745 * 359.97438 * 20 19 17 38 38 H 0.97000 * 119.99961 * 0.02562 * 24 23 22 39 39 H 0.97004 * 119.99945 * 180.02562 * 24 23 22 40 40 H 1.08003 * 126.68378 * 180.02562 * 26 22 21 41 41 H 1.08994 * 109.68619 * 189.74030 * 27 16 15 42 42 H 1.09001 * 109.67876 * 69.18108 * 27 16 15 43 43 H 1.08998 * 109.51220 * 292.37326 * 28 27 16 44 44 H 1.09006 * 109.55281 * 172.24873 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6114 -0.6621 3.5093 8 7 2.7375 -0.0053 4.6429 9 14 3.0544 -2.4748 3.4256 10 1 4.4870 -2.6180 3.0617 11 1 2.8144 -3.1045 4.7489 12 1 2.2140 -3.1429 2.3997 13 6 2.0400 -0.7212 -1.2493 14 1 3.1265 -0.7981 -1.2073 15 6 1.6294 0.0665 -2.4987 16 7 1.9646 -0.7371 -3.6849 17 6 2.6671 -0.2074 -4.7059 18 8 2.9731 0.9692 -4.6874 19 6 3.0648 -1.0550 -5.8455 20 6 4.2647 -1.0175 -6.5224 21 8 4.2339 -1.9435 -7.4835 22 6 3.0464 -2.5832 -7.4665 23 6 2.6417 -3.6602 -8.3778 24 7 3.4894 -4.0875 -9.3346 25 8 1.5406 -4.1667 -8.2701 26 6 2.2862 -2.0646 -6.4644 27 6 1.5097 -2.1360 -3.7238 28 6 1.9261 -2.8163 -2.4147 29 8 1.4705 -2.0310 -1.3103 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1526 34 1 3.0609 -0.4626 5.4349 35 1 0.5565 0.2577 -2.4760 36 1 2.1706 1.0120 -2.5308 37 1 5.0899 -0.3541 -6.3099 38 1 4.3670 -3.6835 -9.4206 39 1 3.2218 -4.7991 -9.9371 40 1 1.2846 -2.3642 -6.1932 41 1 1.9717 -2.6491 -4.5672 42 1 0.4248 -2.1665 -3.8244 43 1 3.0122 -2.9009 -2.3778 44 1 1.4816 -3.8103 -2.3626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755445249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:57 Heat of formation + Delta-G solvation = -99.221594 kcal Electronic energy + Delta-G solvation = -29422.988226 eV Core-core repulsion = 25149.087348 eV Total energy + Delta-G solvation = -4273.900878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.00509 -41.43542 -40.32790 -39.61976 -37.29706 -35.93539 -35.01233 -34.51849 -34.13147 -32.26211 -31.18095 -30.25918 -28.71855 -26.53691 -25.11643 -24.92221 -24.54717 -22.95282 -22.04485 -21.31710 -20.43363 -19.79255 -19.21619 -18.38151 -17.86637 -17.63231 -17.46477 -17.39523 -16.92345 -16.58630 -16.42129 -16.22561 -15.80432 -15.55161 -15.52548 -15.21366 -14.81339 -14.55389 -14.46262 -14.41969 -14.28648 -13.81281 -13.71680 -13.29288 -13.06433 -12.92553 -12.48953 -12.39671 -12.11364 -11.85360 -11.77872 -11.74761 -11.62890 -11.38649 -11.21888 -10.97895 -10.94528 -10.86468 -9.94829 -9.65985 -9.31731 -8.00914 -5.33575 -0.16624 0.47310 1.38566 1.38822 1.41077 1.49559 1.61338 1.83853 2.01752 2.44517 2.49817 2.71629 3.27121 3.31482 3.40063 3.62459 3.70716 3.84025 3.87647 3.93720 4.04115 4.15851 4.23107 4.27180 4.31455 4.46216 4.57904 4.61861 4.69979 4.75152 4.77558 4.86478 4.92031 5.04855 5.18529 5.23840 5.44479 5.58849 5.74247 5.78355 6.14855 6.17015 6.24700 6.25115 6.89352 7.07799 7.09271 7.85486 8.05690 9.20514 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.002544 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.193295 B =11001.616520 C =11421.162703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 H 0.063 0.937 4 N -0.747 5.747 5 C -0.226 4.226 6 H 0.060 0.940 7 C -0.065 4.065 8 N -0.984 5.984 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.254 1.254 13 C 0.087 3.913 14 H 0.053 0.947 15 C 0.092 3.908 16 N -0.604 5.604 17 C 0.589 3.411 18 O -0.572 6.572 19 C -0.262 4.262 20 C 0.095 3.905 21 O -0.140 6.140 22 C -0.088 4.088 23 C 0.610 3.390 24 N -0.820 5.820 25 O -0.560 6.560 26 C -0.094 4.094 27 C 0.065 3.935 28 C 0.039 3.961 29 O -0.382 6.382 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.367 0.633 34 H 0.257 0.743 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.255 0.745 38 H 0.421 0.579 39 H 0.420 0.580 40 H 0.176 0.824 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -9.610 -33.363 34.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.072 3.928 3 H 0.080 0.920 4 N -0.391 5.391 5 C -0.357 4.357 6 H 0.078 0.922 7 C -0.256 4.256 8 N -0.634 5.634 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.179 1.179 13 C 0.028 3.972 14 H 0.071 0.929 15 C -0.031 4.031 16 N -0.336 5.336 17 C 0.379 3.621 18 O -0.452 6.452 19 C -0.266 4.266 20 C 0.022 3.978 21 O -0.033 6.033 22 C -0.140 4.140 23 C 0.395 3.605 24 N -0.384 5.384 25 O -0.440 6.440 26 C -0.114 4.114 27 C -0.057 4.057 28 C -0.038 4.038 29 O -0.301 6.301 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.270 0.730 38 H 0.252 0.748 39 H 0.254 0.746 40 H 0.193 0.807 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.789 -9.205 -33.130 34.497 hybrid contribution 0.595 -0.631 0.542 1.023 sum 3.384 -9.835 -32.587 34.207 Atomic orbital electron populations 1.22220 0.96663 1.01590 1.00633 1.20389 0.93952 0.94746 0.83708 0.91951 1.42706 1.79917 1.09643 1.06808 1.19049 1.34844 0.94452 0.87338 0.92196 1.25457 1.02552 1.02392 0.95210 1.69884 1.54816 1.37620 1.01127 0.85436 0.78501 0.81148 0.76904 1.20544 1.22346 1.17889 1.22615 0.96708 0.83753 0.94160 0.92877 1.22291 1.02673 0.95144 0.82960 1.48040 1.54069 1.13584 1.17900 1.17590 0.76888 0.86058 0.81541 1.90804 1.57181 1.17312 1.79911 1.20428 0.98802 1.04352 1.03049 1.25535 0.98747 0.89286 0.84226 1.83973 1.33586 1.39829 1.45915 1.21781 0.86364 1.02212 1.03632 1.16514 0.84106 0.80026 0.79901 1.43544 1.19551 1.41268 1.34032 1.90949 1.22378 1.58026 1.72666 1.22148 1.01386 0.93951 0.93950 1.22999 1.01966 0.80387 1.00364 1.23213 0.99791 0.95864 0.84919 1.88042 1.68217 1.25526 1.48280 0.90924 0.94734 0.92817 0.79966 0.93431 0.88796 0.88795 0.72972 0.74778 0.74604 0.80685 0.86295 0.88730 0.92839 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.06 71.98 0.65 -4.58 16 2 C 0.18 6.81 2.77 44.99 0.12 6.94 16 3 H 0.06 2.43 8.08 -2.39 -0.02 2.41 16 4 N -0.75 -35.45 4.91 -322.93 -1.58 -37.04 16 5 C -0.23 -12.98 10.41 84.04 0.87 -12.11 16 6 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 7 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 8 N -0.98 -63.79 13.97 21.65 0.30 -63.49 16 9 Si 0.95 46.57 27.73 68.60 1.90 48.47 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.25 -11.48 6.52 99.48 0.65 -10.84 16 13 C 0.09 2.66 2.61 30.69 0.08 2.74 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 15 C 0.09 2.40 5.81 86.36 0.50 2.90 16 16 N -0.60 -13.58 3.02 -821.18 -2.48 -16.06 16 17 C 0.59 13.97 7.62 86.68 0.66 14.63 16 18 O -0.57 -17.56 16.57 -4.02 -0.07 -17.62 16 19 C -0.26 -4.41 5.46 -20.08 -0.11 -4.52 16 20 C 0.10 1.06 12.11 67.72 0.82 1.88 16 21 O -0.14 -1.38 10.33 -0.82 -0.01 -1.39 16 22 C -0.09 -1.16 7.09 24.00 0.17 -0.99 16 23 C 0.61 8.21 8.06 86.47 0.70 8.91 16 24 N -0.82 -3.97 8.87 -176.33 -1.56 -5.53 16 25 O -0.56 -11.92 17.68 -4.28 -0.08 -12.00 16 26 C -0.09 -1.40 8.14 22.62 0.18 -1.22 16 27 C 0.06 1.10 5.80 86.35 0.50 1.60 16 28 C 0.04 0.79 6.98 72.08 0.50 1.29 16 29 O -0.38 -11.12 9.24 -148.98 -1.38 -12.50 16 30 H 0.07 1.99 6.41 -2.39 -0.02 1.98 16 31 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.05 1.88 7.56 -2.38 -0.02 1.86 16 33 H 0.37 17.16 5.44 -92.71 -0.50 16.66 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.09 2.26 6.26 -2.39 -0.01 2.25 16 36 H 0.09 2.65 7.11 -2.39 -0.02 2.63 16 37 H 0.25 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.42 0.01 8.57 -92.71 -0.79 -0.78 16 39 H 0.42 0.84 8.93 -92.71 -0.83 0.01 16 40 H 0.18 2.43 6.91 -2.91 -0.02 2.41 16 41 H 0.12 1.60 4.18 -2.39 -0.01 1.59 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.13 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -81.97 365.06 0.08 -81.89 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -1.09 Total: 21.20 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 6.13 Total: 14.07 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.33 Total: -122.12 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.53 Total: -43.51 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Total: -81.97 0.08 -81.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755445249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.336 kcal (2) G-P(sol) polarization free energy of solvation -81.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds