Wall clock time and date at job start Tue Mar 31 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47299 * 2 1 4 4 C 1.37710 * 127.20016 * 85.25137 * 3 2 1 5 5 C 1.47048 * 126.51772 * 0.02562 * 4 3 2 6 6 S 1.76201 * 126.15849 * 359.72670 * 5 4 3 7 7 C 1.70893 * 90.44683 * 179.74148 * 6 5 4 8 8 C 1.50701 * 124.65226 * 179.97438 * 7 6 5 9 9 N 1.29168 * 110.69299 * 0.02562 * 7 6 5 10 10 C 1.31598 * 117.37911 * 0.02562 * 9 7 6 11 11 O 1.35967 * 123.09907 * 180.02562 * 10 9 7 12 12 N 1.31547 * 106.96934 * 179.73500 * 4 3 2 13 13 N 1.28504 * 109.94248 * 0.24915 * 12 4 3 14 14 C 1.31187 * 110.18967 * 359.97438 * 13 12 4 15 15 N 1.38608 * 126.35418 * 180.02562 * 14 13 12 16 16 C 1.46901 * 110.99902 * 305.99490 * 15 14 13 17 17 C 1.46905 * 110.99812 * 69.94564 * 15 14 13 18 18 H 1.08996 * 109.46990 * 55.00025 * 17 15 14 19 19 C 1.53002 * 109.46978 * 295.00233 * 17 15 14 20 20 C 1.50699 * 109.46929 * 175.00309 * 17 15 14 21 21 H 1.07997 * 120.00000 * 359.97438 * 20 17 15 22 22 C 1.37872 * 119.99713 * 180.02562 * 20 17 15 23 23 N 1.31513 * 120.00243 * 359.97438 * 22 20 17 24 24 Si 1.86807 * 119.99948 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.46845 * 59.99580 * 24 22 20 26 26 H 1.48491 * 109.47265 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46940 * 299.99965 * 24 22 20 28 28 H 1.09007 * 109.46869 * 295.55848 * 1 2 3 29 29 H 1.09000 * 109.47154 * 55.55452 * 1 2 3 30 30 H 1.08993 * 109.47137 * 175.56180 * 1 2 3 31 31 H 1.08996 * 109.47069 * 239.99909 * 2 1 3 32 32 H 1.09002 * 109.46950 * 119.99537 * 2 1 3 33 33 H 1.08990 * 109.47191 * 90.00309 * 8 7 6 34 34 H 1.09006 * 109.46417 * 210.00277 * 8 7 6 35 35 H 1.08998 * 109.47034 * 329.99781 * 8 7 6 36 36 H 0.96703 * 113.99676 * 270.00073 * 11 10 9 37 37 H 1.09004 * 109.46854 * 59.55214 * 16 15 14 38 38 H 1.08997 * 109.47018 * 179.55843 * 16 15 14 39 39 H 1.08998 * 109.46832 * 299.55424 * 16 15 14 40 40 H 1.08996 * 109.47090 * 299.99731 * 19 17 15 41 41 H 1.08999 * 109.47344 * 60.00162 * 19 17 15 42 42 H 1.09002 * 109.46430 * 180.02562 * 19 17 15 43 43 H 0.97002 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2103 2.1964 1.0931 5 6 1.9632 1.8465 2.4998 6 16 1.3584 0.3028 3.0964 7 6 1.4341 0.8789 4.7035 8 6 1.0455 0.0786 5.9198 9 7 1.8690 2.0949 4.7324 10 6 2.1656 2.6591 3.5811 11 8 2.6323 3.9318 3.4764 12 7 2.6628 3.3456 0.6403 13 7 2.7593 3.3046 -0.6405 14 6 2.3770 2.1315 -1.0860 15 7 2.3470 1.7257 -2.4110 16 6 1.5737 2.6667 -3.2324 17 6 3.7067 1.5585 -2.9413 18 1 4.2633 0.8714 -2.3040 19 6 4.4139 2.9150 -2.9684 20 6 3.6356 1.0010 -4.3396 21 1 2.6762 0.7915 -4.7892 22 6 4.7952 0.7575 -5.0444 23 7 5.9634 1.0122 -4.4967 24 14 4.7071 0.0658 -6.7775 25 1 3.9490 1.0019 -7.6460 26 1 6.0815 -0.1031 -7.3135 27 1 4.0204 -1.2507 -6.7506 28 1 -0.3633 0.4434 0.9272 29 1 -0.3633 0.5813 -0.8475 30 1 -0.3633 -1.0245 -0.0795 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9156 -0.4618 6.2923 34 1 0.6763 0.7510 6.6943 35 1 0.2634 -0.6320 5.6526 36 1 1.9385 4.5984 3.3789 37 1 2.0257 3.6568 -3.1734 38 1 1.5728 2.3287 -4.2686 39 1 0.5487 2.7127 -2.8644 40 1 3.8574 3.6022 -3.6057 41 1 4.4654 3.3183 -1.9571 42 1 5.4227 2.7909 -3.3623 43 1 6.7793 0.8413 -4.9928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772197980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:43 Heat of formation + Delta-G solvation = 106.154111 kcal Electronic energy + Delta-G solvation = -27539.273915 eV Core-core repulsion = 23749.324418 eV Total energy + Delta-G solvation = -3789.949497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.51769 -40.26648 -37.29696 -36.72536 -35.57066 -33.00288 -32.23143 -30.62444 -30.28632 -28.79170 -27.40896 -25.36147 -25.21233 -24.25235 -23.91965 -22.17975 -21.41446 -19.86941 -19.45025 -18.87160 -17.24017 -16.82403 -16.45791 -15.93588 -15.78744 -15.38942 -15.26482 -14.60589 -14.53435 -14.16996 -13.80182 -13.72138 -13.33297 -12.95887 -12.86104 -12.78161 -12.46997 -12.42496 -12.28753 -11.58344 -11.46327 -11.35453 -11.26243 -11.15908 -10.95895 -10.85064 -10.63711 -10.34929 -10.26244 -10.11632 -9.96046 -9.91378 -9.77635 -9.14778 -8.96427 -8.49582 -8.08760 -7.76108 -6.11079 -4.18273 0.04895 0.80040 1.28285 1.97669 2.43454 2.51332 3.26056 3.27717 3.31612 3.33203 3.41600 4.22308 4.28303 4.46828 4.53514 4.58957 4.74374 4.89138 5.02798 5.08480 5.17696 5.20772 5.38986 5.44041 5.56887 5.63607 5.66355 5.81981 5.95479 6.05718 6.28833 6.32308 6.54277 6.76569 6.86913 7.01007 7.12128 7.29023 7.44695 7.51296 7.58594 7.69270 7.85628 8.20659 8.38312 8.84531 9.07179 9.46799 10.95547 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.003154 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.762633 B = 8875.761925 C = 9360.286607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.468 5.468 4 C 0.222 3.778 5 C -0.176 4.176 6 S 0.180 5.820 7 C 0.051 3.949 8 C -0.078 4.078 9 N -0.481 5.481 10 C 0.293 3.707 11 O -0.438 6.438 12 N -0.249 5.249 13 N -0.307 5.307 14 C 0.393 3.607 15 N -0.470 5.470 16 C 0.046 3.954 17 C 0.224 3.776 18 H 0.036 0.964 19 C -0.174 4.174 20 C -0.510 4.510 21 H 0.066 0.934 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.902 3.098 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.398 0.602 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.087 0.913 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.631 -4.613 16.607 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.162 5.162 4 C -0.043 4.043 5 C -0.301 4.301 6 S 0.434 5.566 7 C -0.226 4.226 8 C -0.138 4.138 9 N -0.204 5.204 10 C 0.115 3.885 11 O -0.244 6.244 12 N -0.093 5.093 13 N -0.152 5.152 14 C 0.039 3.961 15 N -0.197 5.197 16 C -0.101 4.101 17 C 0.120 3.880 18 H 0.054 0.946 19 C -0.233 4.233 20 C -0.549 4.549 21 H 0.084 0.916 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.729 3.271 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.256 0.744 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.106 0.894 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.832 -4.595 16.588 21.469 hybrid contribution 0.058 0.143 -1.055 1.066 sum -12.774 -4.452 15.533 20.597 Atomic orbital electron populations 1.22162 0.93639 1.03598 1.02981 1.21930 0.95940 0.79183 1.04892 1.46562 1.49995 1.13490 1.06157 1.20747 1.07670 0.89992 0.85846 1.23017 1.14965 0.99083 0.93055 1.83898 1.59481 1.12417 1.00814 1.26885 1.01703 0.93822 1.00220 1.20518 1.02574 0.98499 0.92245 1.65771 1.15311 1.10271 1.29014 1.18097 0.97340 0.88816 0.84296 1.84970 1.34103 1.11447 1.93895 1.74536 1.14542 1.16592 1.03605 1.74771 1.20082 1.17931 1.02405 1.22961 0.96760 0.86780 0.89638 1.59494 1.20641 1.45748 0.93806 1.22245 0.94856 0.94572 0.98457 1.19430 0.79168 0.94094 0.95316 0.94603 1.22450 1.04180 0.97663 0.99038 1.20943 0.93030 1.43001 0.97883 0.91587 1.24915 0.95204 0.95443 0.98384 1.69899 0.97439 1.47670 1.37583 0.86506 0.77087 0.79510 0.83980 1.20146 1.21288 1.20184 0.92360 0.91089 0.89974 0.86572 0.90019 0.89171 0.88955 0.89715 0.74448 0.93844 0.89074 0.93765 0.94782 0.94783 0.89436 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.07 37.16 0.37 -1.35 16 2 C 0.10 1.38 6.16 -4.04 -0.02 1.35 16 3 N -0.47 -8.19 2.84 -114.75 -0.33 -8.51 16 4 C 0.22 3.96 7.89 -153.75 -1.21 2.74 16 5 C -0.18 -2.58 6.53 -36.54 -0.24 -2.82 16 6 S 0.18 1.80 19.11 -107.50 -2.05 -0.25 16 7 C 0.05 0.50 7.36 -13.40 -0.10 0.40 16 8 C -0.08 -0.43 10.46 36.01 0.38 -0.05 16 9 N -0.48 -6.27 10.52 -11.41 -0.12 -6.39 16 10 C 0.29 4.27 7.94 -18.19 -0.14 4.13 16 11 O -0.44 -6.42 12.94 -19.64 -0.25 -6.67 16 12 N -0.25 -5.14 11.59 32.47 0.38 -4.77 16 13 N -0.31 -6.80 9.75 30.38 0.30 -6.51 16 14 C 0.39 8.14 6.23 -318.41 -1.98 6.16 16 15 N -0.47 -10.01 4.76 -175.97 -0.84 -10.85 16 16 C 0.05 0.89 8.70 60.07 0.52 1.42 16 17 C 0.22 5.59 2.32 -68.86 -0.16 5.43 16 18 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 19 C -0.17 -4.42 8.19 37.16 0.30 -4.12 16 20 C -0.51 -13.26 7.88 -34.44 -0.27 -13.54 16 21 H 0.07 1.66 6.77 -52.49 -0.36 1.31 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 24 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.06 0.57 7.19 -51.93 -0.37 0.20 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.12 1.66 8.13 -51.93 -0.42 1.23 16 32 H 0.08 0.93 5.90 -51.93 -0.31 0.62 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.40 4.06 9.06 45.56 0.41 4.47 16 37 H 0.04 0.88 6.39 -51.93 -0.33 0.55 16 38 H 0.09 1.77 6.40 -51.93 -0.33 1.44 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.83 6.48 -51.93 -0.34 0.49 16 41 H 0.03 0.86 5.92 -51.93 -0.31 0.55 16 42 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -33.26 362.30 -9.26 -42.53 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.76 Total: 3.38 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.65 Total: 1.34 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.02 Total: -61.29 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.25 Total: -6.67 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.05 Total: -0.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.26 -9.26 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772197980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.683 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds