Wall clock time and date at job start Tue Mar 31 2020 21:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47299 * 2 1 4 4 C 1.37710 * 127.20016 * 85.25137 * 3 2 1 5 5 C 1.47048 * 126.51772 * 0.02562 * 4 3 2 6 6 S 1.76201 * 126.15849 * 359.72670 * 5 4 3 7 7 C 1.70893 * 90.44683 * 179.74148 * 6 5 4 8 8 C 1.50701 * 124.65226 * 179.97438 * 7 6 5 9 9 N 1.29168 * 110.69299 * 0.02562 * 7 6 5 10 10 C 1.31598 * 117.37911 * 0.02562 * 9 7 6 11 11 O 1.35967 * 123.09907 * 180.02562 * 10 9 7 12 12 N 1.31547 * 106.96934 * 179.73500 * 4 3 2 13 13 N 1.28504 * 109.94248 * 0.24915 * 12 4 3 14 14 C 1.31187 * 110.18967 * 359.97438 * 13 12 4 15 15 N 1.38608 * 126.35418 * 180.02562 * 14 13 12 16 16 C 1.46901 * 110.99902 * 305.99490 * 15 14 13 17 17 C 1.46905 * 110.99812 * 69.94564 * 15 14 13 18 18 H 1.08996 * 109.46990 * 55.00025 * 17 15 14 19 19 C 1.53002 * 109.46978 * 295.00233 * 17 15 14 20 20 C 1.50699 * 109.46929 * 175.00309 * 17 15 14 21 21 H 1.07997 * 120.00000 * 359.97438 * 20 17 15 22 22 C 1.37872 * 119.99713 * 180.02562 * 20 17 15 23 23 N 1.31513 * 120.00243 * 359.97438 * 22 20 17 24 24 Si 1.86807 * 119.99948 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.46845 * 59.99580 * 24 22 20 26 26 H 1.48491 * 109.47265 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46940 * 299.99965 * 24 22 20 28 28 H 1.09007 * 109.46869 * 295.55848 * 1 2 3 29 29 H 1.09000 * 109.47154 * 55.55452 * 1 2 3 30 30 H 1.08993 * 109.47137 * 175.56180 * 1 2 3 31 31 H 1.08996 * 109.47069 * 239.99909 * 2 1 3 32 32 H 1.09002 * 109.46950 * 119.99537 * 2 1 3 33 33 H 1.08990 * 109.47191 * 90.00309 * 8 7 6 34 34 H 1.09006 * 109.46417 * 210.00277 * 8 7 6 35 35 H 1.08998 * 109.47034 * 329.99781 * 8 7 6 36 36 H 0.96703 * 113.99676 * 270.00073 * 11 10 9 37 37 H 1.09004 * 109.46854 * 59.55214 * 16 15 14 38 38 H 1.08997 * 109.47018 * 179.55843 * 16 15 14 39 39 H 1.08998 * 109.46832 * 299.55424 * 16 15 14 40 40 H 1.08996 * 109.47090 * 299.99731 * 19 17 15 41 41 H 1.08999 * 109.47344 * 60.00162 * 19 17 15 42 42 H 1.09002 * 109.46430 * 180.02562 * 19 17 15 43 43 H 0.97002 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2103 2.1964 1.0931 5 6 1.9632 1.8465 2.4998 6 16 1.3584 0.3028 3.0964 7 6 1.4341 0.8789 4.7035 8 6 1.0455 0.0786 5.9198 9 7 1.8690 2.0949 4.7324 10 6 2.1656 2.6591 3.5811 11 8 2.6323 3.9318 3.4764 12 7 2.6628 3.3456 0.6403 13 7 2.7593 3.3046 -0.6405 14 6 2.3770 2.1315 -1.0860 15 7 2.3470 1.7257 -2.4110 16 6 1.5737 2.6667 -3.2324 17 6 3.7067 1.5585 -2.9413 18 1 4.2633 0.8714 -2.3040 19 6 4.4139 2.9150 -2.9684 20 6 3.6356 1.0010 -4.3396 21 1 2.6762 0.7915 -4.7892 22 6 4.7952 0.7575 -5.0444 23 7 5.9634 1.0122 -4.4967 24 14 4.7071 0.0658 -6.7775 25 1 3.9490 1.0019 -7.6460 26 1 6.0815 -0.1031 -7.3135 27 1 4.0204 -1.2507 -6.7506 28 1 -0.3633 0.4434 0.9272 29 1 -0.3633 0.5813 -0.8475 30 1 -0.3633 -1.0245 -0.0795 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9156 -0.4618 6.2923 34 1 0.6763 0.7510 6.6943 35 1 0.2634 -0.6320 5.6526 36 1 1.9385 4.5984 3.3789 37 1 2.0257 3.6568 -3.1734 38 1 1.5728 2.3287 -4.2686 39 1 0.5487 2.7127 -2.8644 40 1 3.8574 3.6022 -3.6057 41 1 4.4654 3.3183 -1.9571 42 1 5.4227 2.7909 -3.3623 43 1 6.7793 0.8413 -4.9928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772197980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:42 Heat of formation + Delta-G solvation = 82.055461 kcal Electronic energy + Delta-G solvation = -27540.318911 eV Core-core repulsion = 23749.324418 eV Total energy + Delta-G solvation = -3790.994493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.96483 -41.25412 -39.04182 -37.76945 -36.82164 -34.91366 -33.27935 -31.68396 -31.51098 -30.56984 -28.67624 -27.26142 -26.97126 -25.28817 -24.91246 -23.44718 -23.01975 -21.23230 -20.76540 -19.89624 -18.42812 -18.27887 -18.14878 -17.41944 -17.00562 -16.85947 -16.50150 -16.28088 -15.43048 -15.41842 -15.02734 -14.94229 -14.63512 -14.26770 -14.11925 -13.74432 -13.53265 -13.34640 -13.25062 -13.18138 -13.08403 -12.91700 -12.70148 -12.63488 -12.45274 -12.39974 -12.23585 -12.09142 -12.07726 -11.62174 -11.42950 -11.09702 -10.96017 -10.79556 -10.53626 -10.10574 -9.59263 -9.27646 -8.14740 -6.29180 -0.93721 -0.10146 0.37919 0.71873 1.11289 1.36577 1.46524 1.48211 1.55903 1.84619 2.41484 2.51130 2.93935 3.08693 3.15887 3.45248 3.69797 3.82161 3.93253 4.06872 4.20987 4.32909 4.40775 4.52086 4.61459 4.67857 4.70687 4.71483 4.72529 4.79673 4.96877 4.99294 5.05738 5.07715 5.12895 5.17661 5.33030 5.56224 5.59869 5.74969 5.94049 6.17036 6.35978 6.54896 6.58726 6.80414 7.40307 7.58928 8.92055 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.003154 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.762633 B = 8875.761925 C = 9360.286607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.094 3.906 3 N -0.464 5.464 4 C 0.245 3.755 5 C -0.234 4.234 6 S 0.249 5.751 7 C 0.070 3.930 8 C -0.083 4.083 9 N -0.512 5.512 10 C 0.301 3.699 11 O -0.461 6.461 12 N -0.291 5.291 13 N -0.339 5.339 14 C 0.369 3.631 15 N -0.462 5.462 16 C 0.051 3.949 17 C 0.236 3.764 18 H -0.003 1.003 19 C -0.156 4.156 20 C -0.517 4.517 21 H 0.075 0.925 22 C 0.013 3.987 23 N -0.923 5.923 24 Si 0.969 3.031 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.266 1.266 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.413 0.587 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.026 0.974 42 H 0.061 0.939 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 -7.143 18.004 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.158 5.158 4 C -0.020 4.020 5 C -0.359 4.359 6 S 0.504 5.496 7 C -0.206 4.206 8 C -0.143 4.143 9 N -0.236 5.236 10 C 0.121 3.879 11 O -0.269 6.269 12 N -0.134 5.134 13 N -0.183 5.183 14 C 0.012 3.988 15 N -0.188 5.188 16 C -0.096 4.096 17 C 0.130 3.870 18 H 0.015 0.985 19 C -0.216 4.216 20 C -0.556 4.556 21 H 0.093 0.907 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.794 3.206 25 H -0.192 1.192 26 H -0.216 1.216 27 H -0.191 1.191 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.273 0.727 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.299 -7.141 17.988 24.670 hybrid contribution 0.746 0.862 -1.177 1.639 sum -14.552 -6.279 16.811 23.104 Atomic orbital electron populations 1.22152 0.90996 1.05609 1.02716 1.22303 0.98091 0.77051 1.05330 1.46752 1.49400 1.14573 1.05048 1.21221 1.04631 0.89009 0.87171 1.23145 1.18807 1.02507 0.91408 1.83531 1.57636 1.08806 0.99633 1.27868 0.97957 0.92934 1.01839 1.20864 1.04271 0.98729 0.90430 1.65906 1.17620 1.11877 1.28206 1.18373 0.95920 0.88640 0.84980 1.84881 1.35601 1.12376 1.94059 1.74429 1.17293 1.18667 1.03011 1.74606 1.20887 1.19262 1.03544 1.22845 0.98721 0.87388 0.89802 1.59359 1.18523 1.46440 0.94477 1.22247 0.95821 0.93276 0.98292 1.19071 0.80831 0.92549 0.94574 0.98463 1.22248 1.02724 0.98297 0.98320 1.21221 0.93439 1.42678 0.98225 0.90708 1.25780 0.94747 0.95677 1.02396 1.70057 0.98111 1.48809 1.39190 0.85435 0.76938 0.79195 0.79021 1.19248 1.21550 1.19064 0.91489 0.92697 0.86489 0.87819 0.87944 0.87353 0.88166 0.86540 0.72667 0.95349 0.89127 0.91129 0.94540 0.95521 0.92036 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.07 71.98 0.72 -2.15 16 2 C 0.09 2.38 6.16 86.38 0.53 2.91 16 3 N -0.46 -16.39 2.84 -516.97 -1.47 -17.86 16 4 C 0.25 8.89 7.89 135.85 1.07 9.96 16 5 C -0.23 -6.67 6.53 24.24 0.16 -6.51 16 6 S 0.25 4.19 19.11 -56.49 -1.08 3.11 16 7 C 0.07 1.15 7.36 88.50 0.65 1.80 16 8 C -0.08 -0.52 10.46 71.24 0.74 0.22 16 9 N -0.51 -12.42 10.52 -303.05 -3.19 -15.61 16 10 C 0.30 8.62 7.94 84.38 0.67 9.29 16 11 O -0.46 -13.80 12.94 -93.18 -1.21 -15.01 16 12 N -0.29 -12.56 11.59 -51.17 -0.59 -13.15 16 13 N -0.34 -15.73 9.75 -57.80 -0.56 -16.29 16 14 C 0.37 15.77 6.23 259.95 1.62 17.39 16 15 N -0.46 -20.17 4.76 -710.66 -3.38 -23.56 16 16 C 0.05 1.99 8.70 127.69 1.11 3.10 16 17 C 0.24 12.21 2.32 44.17 0.10 12.32 16 18 H 0.00 -0.15 8.11 -2.39 -0.02 -0.17 16 19 C -0.16 -8.36 8.19 71.98 0.59 -7.77 16 20 C -0.52 -27.27 7.88 25.60 0.20 -27.07 16 21 H 0.07 3.74 6.77 -2.91 -0.02 3.72 16 22 C 0.01 0.71 5.30 84.65 0.45 1.16 16 23 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 24 Si 0.97 42.05 29.54 68.60 2.03 44.08 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H 0.07 1.11 7.19 -2.38 -0.02 1.09 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 32 H 0.10 2.10 5.90 -2.39 -0.01 2.09 16 33 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.10 0.59 8.14 -2.38 -0.02 0.58 16 35 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.41 8.83 9.06 -74.06 -0.67 8.16 16 37 H 0.03 1.18 6.39 -2.39 -0.02 1.16 16 38 H 0.09 3.51 6.40 -2.39 -0.02 3.49 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.86 6.48 -2.39 -0.02 1.84 16 41 H 0.03 1.42 5.92 -2.39 -0.01 1.41 16 42 H 0.06 3.59 6.07 -2.39 -0.01 3.57 16 43 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -76.22 362.30 -0.19 -76.42 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.40 Total: 16.20 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 8.62 Total: 14.65 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -8.96 Total: -139.45 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -1.21 Total: -15.01 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.08 Total: 3.11 kcal Total: -76.22 -0.19 -76.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772197980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.473 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds