Wall clock time and date at job start Tue Mar 31 2020 21:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00027 * 2 1 4 4 C 1.52994 * 109.47058 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47257 * 177.50902 * 4 3 2 6 6 C 1.37754 * 127.16561 * 85.93955 * 5 4 3 7 7 C 1.47194 * 126.49677 * 359.97438 * 6 5 4 8 8 N 1.30456 * 125.47900 * 179.97438 * 7 6 5 9 9 C 1.31262 * 116.99489 * 179.97438 * 8 7 6 10 10 C 1.33756 * 115.87021 * 359.97438 * 9 8 7 11 11 S 1.76176 * 125.48337 * 359.97438 * 7 6 5 12 12 N 1.31467 * 107.00399 * 180.24636 * 6 5 4 13 13 N 1.28511 * 109.90684 * 359.56235 * 12 6 5 14 14 C 1.31461 * 110.11684 * 0.45405 * 13 12 6 15 15 N 1.38317 * 126.35035 * 179.74511 * 14 13 12 16 16 C 1.46901 * 111.00166 * 296.18436 * 15 14 13 17 17 C 1.46908 * 110.99919 * 60.13860 * 15 14 13 18 18 H 1.09001 * 109.46574 * 300.00306 * 17 15 14 19 19 C 1.52997 * 109.46909 * 59.99861 * 17 15 14 20 20 C 1.50698 * 109.47341 * 180.02562 * 17 15 14 21 21 H 1.08003 * 119.99564 * 359.97438 * 20 17 15 22 22 C 1.37876 * 120.00152 * 180.02562 * 20 17 15 23 23 N 1.31508 * 119.99912 * 359.97438 * 22 20 17 24 24 Si 1.86795 * 119.99871 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47036 * 119.99878 * 24 22 20 27 27 H 1.48502 * 109.47021 * 239.99772 * 24 22 20 28 28 H 1.09005 * 109.46852 * 60.00326 * 1 2 3 29 29 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46982 * 300.00107 * 1 2 3 31 31 H 1.08998 * 109.46751 * 59.99860 * 3 2 1 32 32 H 1.08996 * 109.46973 * 300.00096 * 3 2 1 33 33 H 1.08992 * 109.47741 * 57.50808 * 4 3 2 34 34 H 1.09007 * 109.47221 * 297.50235 * 4 3 2 35 35 H 1.07999 * 122.06470 * 179.73001 * 9 8 7 36 36 H 1.08001 * 125.87732 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46731 * 66.03648 * 16 15 14 38 38 H 1.08995 * 109.47129 * 186.03393 * 16 15 14 39 39 H 1.09000 * 109.46813 * 306.03463 * 16 15 14 40 40 H 1.08997 * 109.47325 * 299.99650 * 19 17 15 41 41 H 1.08994 * 109.47480 * 60.00207 * 19 17 15 42 42 H 1.09005 * 109.46698 * 179.97438 * 19 17 15 43 43 H 0.97005 * 120.00325 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5217 -0.0594 6 6 4.4020 3.3604 0.9993 7 6 4.1460 3.0847 2.4223 8 7 4.4112 3.8945 3.4101 9 6 4.1126 3.4781 4.6186 10 6 3.5653 2.2602 4.6976 11 16 3.4322 1.6081 3.0656 12 7 4.9270 4.4562 0.4972 13 7 5.0093 4.3559 -0.7813 14 6 4.5338 3.1953 -1.1754 15 7 4.4563 2.7412 -2.4796 16 6 3.5522 3.5809 -3.2766 17 6 5.7893 2.6729 -3.0933 18 1 6.2397 3.6655 -3.0949 19 6 6.6714 1.7139 -2.2914 20 6 5.6650 2.1759 -4.5105 21 1 4.6930 1.9344 -4.9147 22 6 6.7922 2.0283 -5.2907 23 7 7.9757 2.3219 -4.7983 24 14 6.6381 1.4115 -7.0471 25 1 5.2090 1.1535 -7.3576 26 1 7.1706 2.4367 -7.9803 27 1 7.4122 0.1535 -7.1997 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8545 0.6055 -0.8658 34 1 3.8598 0.6830 0.9125 35 1 4.3010 4.0800 5.4953 36 1 3.2584 1.7619 5.6053 37 1 3.9764 4.5803 -3.3746 38 1 3.4257 3.1413 -4.2660 39 1 2.5836 3.6443 -2.7807 40 1 6.7613 2.0739 -1.2665 41 1 6.2210 0.7214 -2.2897 42 1 7.6603 1.6629 -2.7471 43 1 8.7688 2.2185 -5.3473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772270679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:09 Heat of formation + Delta-G solvation = 109.671647 kcal Electronic energy + Delta-G solvation = -27606.700711 eV Core-core repulsion = 23816.903746 eV Total energy + Delta-G solvation = -3789.796965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.71205 -39.57552 -38.25725 -37.18113 -35.18773 -33.04999 -31.56025 -30.02101 -29.50470 -28.86556 -26.66749 -25.98731 -25.38592 -24.46186 -23.69880 -22.52944 -21.51979 -20.07848 -19.05174 -18.52879 -17.26273 -16.66606 -16.43120 -16.23540 -16.12046 -15.75590 -15.22960 -15.07501 -14.73207 -14.65093 -14.31266 -13.76141 -13.67389 -13.47461 -13.22309 -12.59591 -12.42433 -12.03267 -11.92795 -11.65609 -11.50346 -11.36528 -11.21193 -11.02996 -10.83439 -10.53146 -10.40536 -10.29992 -10.24416 -10.16042 -10.03343 -9.88609 -9.85769 -9.45839 -9.16300 -8.58175 -8.30127 -7.87764 -6.12380 -4.19553 0.09740 0.88458 1.37153 1.84625 2.06596 2.67377 3.22412 3.24790 3.32923 3.35695 3.42095 3.87930 4.26551 4.43412 4.50246 4.61805 4.65287 4.89012 4.95304 5.08084 5.11059 5.16969 5.20287 5.23147 5.41241 5.47173 5.50570 5.59080 5.79302 5.96033 6.12264 6.22314 6.47894 6.59886 6.67393 6.78714 6.85995 6.95053 7.26038 7.45327 7.52098 7.66109 7.81482 8.10020 8.32237 8.83309 8.90988 9.45774 10.94577 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003649 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.744687 B = 7671.843147 C = 8794.760717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.051 3.949 4 C 0.110 3.890 5 N -0.461 5.461 6 C 0.202 3.798 7 C 0.159 3.841 8 N -0.432 5.432 9 C 0.044 3.956 10 C -0.252 4.252 11 S 0.106 5.894 12 N -0.218 5.218 13 N -0.309 5.309 14 C 0.413 3.587 15 N -0.474 5.474 16 C 0.050 3.950 17 C 0.224 3.776 18 H 0.025 0.975 19 C -0.134 4.134 20 C -0.513 4.513 21 H 0.068 0.932 22 C 0.064 3.936 23 N -0.886 5.886 24 Si 0.902 3.098 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.001 0.999 41 H 0.034 0.966 42 H 0.095 0.905 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 -4.828 15.658 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.299 6.299 3 C -0.027 4.027 4 C -0.014 4.014 5 N -0.157 5.157 6 C -0.064 4.064 7 C -0.118 4.118 8 N -0.148 5.148 9 C -0.108 4.108 10 C -0.392 4.392 11 S 0.358 5.642 12 N -0.064 5.064 13 N -0.155 5.155 14 C 0.058 3.942 15 N -0.202 5.202 16 C -0.097 4.097 17 C 0.120 3.880 18 H 0.043 0.957 19 C -0.192 4.192 20 C -0.551 4.551 21 H 0.086 0.914 22 C -0.139 4.139 23 N -0.524 5.524 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.198 0.802 36 H 0.200 0.800 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.053 0.947 42 H 0.113 0.887 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.536 -4.558 14.994 20.708 hybrid contribution -0.258 -0.317 0.056 0.412 sum -13.795 -4.875 15.050 20.989 Atomic orbital electron populations 1.22785 0.80213 1.03075 1.00261 1.87818 1.20279 1.26257 1.95511 1.22727 0.92565 0.85870 1.01507 1.21673 0.92418 0.80930 1.06409 1.46227 1.47524 1.15565 1.06350 1.20659 1.08674 0.90809 0.86216 1.23715 1.02507 0.93080 0.92469 1.66531 1.18000 1.31870 0.98363 1.21770 0.99667 0.94591 0.94777 1.27275 1.10168 1.00437 1.01338 1.85215 1.58731 1.20084 1.00204 1.74580 1.12587 1.16949 1.02267 1.74954 1.20600 1.16344 1.03583 1.22901 0.94693 0.87321 0.89261 1.59285 1.17425 1.49032 0.94473 1.22238 0.93291 0.95756 0.98423 1.19514 0.79247 0.96356 0.92886 0.95700 1.21856 1.03646 0.98244 0.95469 1.21053 0.93841 1.45063 0.95145 0.91354 1.24911 0.95101 0.95180 0.98710 1.69901 0.98031 1.47952 1.36564 0.86383 0.78250 0.78417 0.84016 1.19633 1.20966 1.20968 0.93655 0.89142 0.94003 0.92929 0.91678 0.85352 0.88824 0.80208 0.80015 0.94155 0.88797 0.93787 0.97966 0.94671 0.88700 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.35 10.70 -35.23 -0.38 -4.72 16 3 C 0.05 0.61 6.07 37.15 0.23 0.84 16 4 C 0.11 1.52 5.80 -4.04 -0.02 1.50 16 5 N -0.46 -7.94 2.84 -114.83 -0.33 -8.27 16 6 C 0.20 3.63 7.98 -153.71 -1.23 2.41 16 7 C 0.16 2.39 7.50 -14.50 -0.11 2.28 16 8 N -0.43 -6.42 10.59 -11.51 -0.12 -6.54 16 9 C 0.04 0.46 11.25 -19.37 -0.22 0.24 16 10 C -0.25 -2.18 11.35 29.16 0.33 -1.85 16 11 S 0.11 1.13 19.36 -107.50 -2.08 -0.95 16 12 N -0.22 -4.63 12.24 32.50 0.40 -4.23 16 13 N -0.31 -6.91 12.13 30.30 0.37 -6.54 16 14 C 0.41 8.39 5.00 -318.99 -1.60 6.80 16 15 N -0.47 -9.90 4.63 -176.10 -0.82 -10.72 16 16 C 0.05 0.94 9.13 60.07 0.55 1.48 16 17 C 0.22 5.52 2.00 -68.86 -0.14 5.38 16 18 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 19 C -0.13 -3.26 8.84 37.16 0.33 -2.94 16 20 C -0.51 -13.17 7.95 -34.44 -0.27 -13.45 16 21 H 0.07 1.70 6.40 -52.48 -0.34 1.37 16 22 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -24.57 11.32 55.43 0.63 -23.95 16 24 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.59 7.31 -51.93 -0.38 0.21 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.91 8.12 -51.93 -0.42 1.49 16 34 H 0.09 1.16 5.78 -51.62 -0.30 0.86 16 35 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.74 6.31 -51.93 -0.33 1.41 16 39 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.00 0.03 7.22 -51.93 -0.38 -0.34 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -31.38 370.53 -8.71 -40.09 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.81 Total: -0.77 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.13 Total: 5.66 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.13 Total: -60.24 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.38 Total: -4.72 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.08 Total: -0.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.38 -8.71 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772270679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.761 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds