Wall clock time and date at job start Tue Mar 31 2020 21:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00027 * 2 1 4 4 C 1.52994 * 109.47058 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47257 * 177.50902 * 4 3 2 6 6 C 1.37754 * 127.16561 * 85.93955 * 5 4 3 7 7 C 1.47194 * 126.49677 * 359.97438 * 6 5 4 8 8 N 1.30456 * 125.47900 * 179.97438 * 7 6 5 9 9 C 1.31262 * 116.99489 * 179.97438 * 8 7 6 10 10 C 1.33756 * 115.87021 * 359.97438 * 9 8 7 11 11 S 1.76176 * 125.48337 * 359.97438 * 7 6 5 12 12 N 1.31467 * 107.00399 * 180.24636 * 6 5 4 13 13 N 1.28511 * 109.90684 * 359.56235 * 12 6 5 14 14 C 1.31461 * 110.11684 * 0.45405 * 13 12 6 15 15 N 1.38317 * 126.35035 * 179.74511 * 14 13 12 16 16 C 1.46901 * 111.00166 * 296.18436 * 15 14 13 17 17 C 1.46908 * 110.99919 * 60.13860 * 15 14 13 18 18 H 1.09001 * 109.46574 * 300.00306 * 17 15 14 19 19 C 1.52997 * 109.46909 * 59.99861 * 17 15 14 20 20 C 1.50698 * 109.47341 * 180.02562 * 17 15 14 21 21 H 1.08003 * 119.99564 * 359.97438 * 20 17 15 22 22 C 1.37876 * 120.00152 * 180.02562 * 20 17 15 23 23 N 1.31508 * 119.99912 * 359.97438 * 22 20 17 24 24 Si 1.86795 * 119.99871 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47036 * 119.99878 * 24 22 20 27 27 H 1.48502 * 109.47021 * 239.99772 * 24 22 20 28 28 H 1.09005 * 109.46852 * 60.00326 * 1 2 3 29 29 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46982 * 300.00107 * 1 2 3 31 31 H 1.08998 * 109.46751 * 59.99860 * 3 2 1 32 32 H 1.08996 * 109.46973 * 300.00096 * 3 2 1 33 33 H 1.08992 * 109.47741 * 57.50808 * 4 3 2 34 34 H 1.09007 * 109.47221 * 297.50235 * 4 3 2 35 35 H 1.07999 * 122.06470 * 179.73001 * 9 8 7 36 36 H 1.08001 * 125.87732 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46731 * 66.03648 * 16 15 14 38 38 H 1.08995 * 109.47129 * 186.03393 * 16 15 14 39 39 H 1.09000 * 109.46813 * 306.03463 * 16 15 14 40 40 H 1.08997 * 109.47325 * 299.99650 * 19 17 15 41 41 H 1.08994 * 109.47480 * 60.00207 * 19 17 15 42 42 H 1.09005 * 109.46698 * 179.97438 * 19 17 15 43 43 H 0.97005 * 120.00325 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5217 -0.0594 6 6 4.4020 3.3604 0.9993 7 6 4.1460 3.0847 2.4223 8 7 4.4112 3.8945 3.4101 9 6 4.1126 3.4781 4.6186 10 6 3.5653 2.2602 4.6976 11 16 3.4322 1.6081 3.0656 12 7 4.9270 4.4562 0.4972 13 7 5.0093 4.3559 -0.7813 14 6 4.5338 3.1953 -1.1754 15 7 4.4563 2.7412 -2.4796 16 6 3.5522 3.5809 -3.2766 17 6 5.7893 2.6729 -3.0933 18 1 6.2397 3.6655 -3.0949 19 6 6.6714 1.7139 -2.2914 20 6 5.6650 2.1759 -4.5105 21 1 4.6930 1.9344 -4.9147 22 6 6.7922 2.0283 -5.2907 23 7 7.9757 2.3219 -4.7983 24 14 6.6381 1.4115 -7.0471 25 1 5.2090 1.1535 -7.3576 26 1 7.1706 2.4367 -7.9803 27 1 7.4122 0.1535 -7.1997 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8545 0.6055 -0.8658 34 1 3.8598 0.6830 0.9125 35 1 4.3010 4.0800 5.4953 36 1 3.2584 1.7619 5.6053 37 1 3.9764 4.5803 -3.3746 38 1 3.4257 3.1413 -4.2660 39 1 2.5836 3.6443 -2.7807 40 1 6.7613 2.0739 -1.2665 41 1 6.2210 0.7214 -2.2897 42 1 7.6603 1.6629 -2.7471 43 1 8.7688 2.2185 -5.3473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772270679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:05 Heat of formation + Delta-G solvation = 88.850366 kcal Electronic energy + Delta-G solvation = -27607.603590 eV Core-core repulsion = 23816.903746 eV Total energy + Delta-G solvation = -3790.699844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.16053 -40.51123 -39.13211 -38.89465 -36.45622 -34.96832 -32.73394 -31.38970 -31.09062 -30.13412 -27.74904 -27.28200 -26.75800 -26.15396 -24.78490 -23.89581 -22.99690 -21.50821 -20.27477 -19.52246 -18.60475 -18.30895 -17.66598 -17.38212 -17.28622 -16.88437 -16.64700 -16.43997 -15.91635 -15.74529 -15.55205 -15.20209 -14.96869 -14.66539 -14.30945 -14.20485 -13.75025 -13.54005 -13.07207 -12.99794 -12.86917 -12.78750 -12.67269 -12.43261 -12.30614 -12.26449 -12.22732 -12.07265 -11.85577 -11.49261 -11.11354 -11.02995 -10.87326 -10.84890 -10.58768 -10.41593 -9.65865 -9.52087 -8.14086 -6.28329 -0.89652 -0.05258 0.51399 0.60073 0.76830 1.45671 1.46744 1.48690 1.60236 1.98722 2.39834 2.46928 2.71783 3.07734 3.17824 3.30808 3.60716 3.68671 3.95860 3.98590 4.09055 4.22177 4.32853 4.41458 4.43286 4.49591 4.55276 4.56889 4.60441 4.68053 4.77172 4.82216 4.86964 4.88375 5.03971 5.07936 5.27800 5.34930 5.60758 5.72631 5.89649 5.99847 6.10936 6.48062 6.57652 6.82009 7.40465 7.43849 8.93399 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003649 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.744687 B = 7671.843147 C = 8794.760717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.062 3.938 4 C 0.105 3.895 5 N -0.453 5.453 6 C 0.229 3.771 7 C 0.097 3.903 8 N -0.456 5.456 9 C 0.020 3.980 10 C -0.210 4.210 11 S 0.156 5.844 12 N -0.270 5.270 13 N -0.347 5.347 14 C 0.395 3.605 15 N -0.465 5.465 16 C 0.052 3.948 17 C 0.233 3.767 18 H -0.023 1.023 19 C -0.116 4.116 20 C -0.520 4.520 21 H 0.078 0.922 22 C 0.014 3.986 23 N -0.921 5.921 24 Si 0.969 3.031 25 H -0.258 1.258 26 H -0.285 1.285 27 H -0.282 1.282 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.211 0.789 36 H 0.230 0.770 37 H 0.021 0.979 38 H 0.096 0.904 39 H 0.073 0.927 40 H -0.003 1.003 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 -7.186 17.804 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.017 4.017 5 N -0.148 5.148 6 C -0.038 4.038 7 C -0.178 4.178 8 N -0.173 5.173 9 C -0.131 4.131 10 C -0.350 4.350 11 S 0.407 5.593 12 N -0.114 5.114 13 N -0.192 5.192 14 C 0.038 3.962 15 N -0.192 5.192 16 C -0.095 4.095 17 C 0.128 3.872 18 H -0.005 1.005 19 C -0.174 4.174 20 C -0.558 4.558 21 H 0.096 0.904 22 C -0.185 4.185 23 N -0.560 5.560 24 Si 0.794 3.206 25 H -0.182 1.182 26 H -0.211 1.211 27 H -0.208 1.208 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.227 0.773 36 H 0.246 0.754 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.155 -6.912 17.131 24.540 hybrid contribution 0.440 0.338 -0.270 0.617 sum -15.715 -6.574 16.860 23.968 Atomic orbital electron populations 1.23035 0.78372 1.04582 1.01104 1.87799 1.22219 1.25560 1.95622 1.22526 0.90959 0.86417 1.01661 1.21897 0.93950 0.79113 1.06778 1.46244 1.47100 1.16275 1.05171 1.21215 1.05317 0.89499 0.87800 1.23501 1.07049 0.96169 0.91082 1.66483 1.17663 1.33357 0.99832 1.22255 1.00668 0.96039 0.94149 1.27941 1.06120 0.99105 1.01833 1.84999 1.56438 1.16976 1.00906 1.74466 1.15755 1.19299 1.01863 1.74798 1.21736 1.17941 1.04712 1.22710 0.96350 0.87690 0.89436 1.59197 1.15510 1.49503 0.94953 1.22276 0.94021 0.94440 0.98738 1.19170 0.81031 0.93678 0.93318 1.00497 1.21619 1.02329 0.98654 0.94845 1.21337 0.94251 1.44565 0.95629 0.90425 1.25766 0.94701 0.95313 1.02761 1.70053 0.98791 1.49108 1.38087 0.85329 0.78797 0.77555 0.78879 1.18169 1.21125 1.20766 0.93458 0.87356 0.92540 0.91850 0.92481 0.86453 0.87118 0.77257 0.75370 0.95994 0.88517 0.90879 0.98363 0.93659 0.91224 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.39 -8.06 10.70 -148.98 -1.59 -9.65 16 3 C 0.06 1.39 6.07 71.98 0.44 1.83 16 4 C 0.11 2.84 5.80 86.38 0.50 3.34 16 5 N -0.45 -15.87 2.84 -517.21 -1.47 -17.34 16 6 C 0.23 8.45 7.98 135.90 1.09 9.53 16 7 C 0.10 2.82 7.50 87.25 0.65 3.48 16 8 N -0.46 -13.04 10.59 -190.34 -2.02 -15.06 16 9 C 0.02 0.36 11.25 83.76 0.94 1.30 16 10 C -0.21 -2.59 11.35 66.80 0.76 -1.83 16 11 S 0.16 2.81 19.36 -56.49 -1.09 1.71 16 12 N -0.27 -12.09 12.24 -51.08 -0.62 -12.71 16 13 N -0.35 -16.52 12.13 -58.06 -0.70 -17.22 16 14 C 0.39 16.73 5.00 260.15 1.30 18.03 16 15 N -0.46 -20.05 4.63 -711.07 -3.29 -23.34 16 16 C 0.05 2.00 9.13 127.69 1.17 3.16 16 17 C 0.23 12.04 2.00 44.17 0.09 12.13 16 18 H -0.02 -1.37 8.09 -2.39 -0.02 -1.39 16 19 C -0.12 -5.91 8.84 71.98 0.64 -5.27 16 20 C -0.52 -27.22 7.95 25.60 0.20 -27.02 16 21 H 0.08 3.85 6.40 -2.91 -0.02 3.83 16 22 C 0.01 0.74 5.30 84.66 0.45 1.19 16 23 N -0.92 -52.82 11.32 21.45 0.24 -52.58 16 24 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 1.27 7.31 -2.39 -0.02 1.25 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.12 3.46 8.12 -2.39 -0.02 3.44 16 34 H 0.11 2.56 5.78 -2.58 -0.01 2.54 16 35 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.23 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.10 3.60 6.31 -2.39 -0.02 3.58 16 39 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 40 H 0.00 -0.14 7.22 -2.39 -0.02 -0.15 16 41 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 3.90 6.07 -2.38 -0.01 3.88 16 43 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -73.20 370.53 1.98 -71.22 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.03 Total: 9.49 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 9.47 Total: 21.45 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -7.86 Total: -138.26 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.59 Total: -9.65 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.09 Total: 1.71 kcal Total: -73.20 1.98 -71.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772270679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.069 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds