Wall clock time and date at job start Tue Mar 31 2020 21:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00395 * 2 1 4 4 C 1.52998 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46821 * 185.07064 * 4 3 2 6 6 C 1.37742 * 127.16671 * 85.80327 * 5 4 3 7 7 C 1.47201 * 126.49667 * 0.02562 * 6 5 4 8 8 N 1.30456 * 125.48432 * 179.71834 * 7 6 5 9 9 C 1.31252 * 116.99551 * 180.02562 * 8 7 6 10 10 C 1.33749 * 115.87463 * 359.97438 * 9 8 7 11 11 S 1.76174 * 125.47969 * 359.73837 * 7 6 5 12 12 N 1.31467 * 107.00857 * 179.76585 * 6 5 4 13 13 N 1.28510 * 109.90305 * 0.22256 * 12 6 5 14 14 C 1.31456 * 110.12232 * 0.02562 * 13 12 6 15 15 N 1.38319 * 126.35256 * 180.02562 * 14 13 12 16 16 C 1.46903 * 110.99535 * 306.84903 * 15 14 13 17 17 C 1.46895 * 110.99853 * 70.80172 * 15 14 13 18 18 H 1.08997 * 109.47214 * 55.00318 * 17 15 14 19 19 C 1.53000 * 109.47390 * 295.00006 * 17 15 14 20 20 C 1.50704 * 109.46999 * 175.00191 * 17 15 14 21 21 H 1.08001 * 120.00001 * 95.20725 * 20 17 15 22 22 C 1.37878 * 120.00118 * 275.21045 * 20 17 15 23 23 N 1.31506 * 120.00109 * 186.14672 * 22 20 17 24 24 Si 1.86805 * 119.99903 * 6.14566 * 22 20 17 25 25 H 1.48504 * 109.46923 * 85.53381 * 24 22 20 26 26 H 1.48494 * 109.47125 * 205.53770 * 24 22 20 27 27 H 1.48502 * 109.46997 * 325.53818 * 24 22 20 28 28 H 1.08992 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47035 * 300.00161 * 1 2 3 30 30 H 1.09007 * 109.46776 * 59.99712 * 1 2 3 31 31 H 1.09000 * 109.46826 * 59.99717 * 3 2 1 32 32 H 1.09007 * 109.47120 * 300.00265 * 3 2 1 33 33 H 1.09002 * 109.47066 * 65.07382 * 4 3 2 34 34 H 1.08991 * 109.47259 * 305.07325 * 4 3 2 35 35 H 1.08003 * 122.06256 * 179.72922 * 9 8 7 36 36 H 1.08000 * 125.87981 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.47138 * 53.61431 * 16 15 14 38 38 H 1.09008 * 109.46361 * 173.61573 * 16 15 14 39 39 H 1.08994 * 109.46970 * 293.60668 * 16 15 14 40 40 H 1.09006 * 109.47002 * 305.01350 * 19 17 15 41 41 H 1.09000 * 109.46996 * 65.01113 * 19 17 15 42 42 H 1.08999 * 109.47382 * 185.01292 * 19 17 15 43 43 H 0.97004 * 119.99878 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1309 2.5175 0.1227 6 6 4.3876 3.2110 1.2848 7 6 4.1149 2.7521 2.6566 8 7 4.3713 3.4242 3.7450 9 6 4.0590 2.8536 4.8850 10 6 3.5084 1.6378 4.7977 11 16 3.3904 1.2066 3.0929 12 7 4.9274 4.3581 0.9369 13 7 5.0191 4.4281 -0.3430 14 6 4.5437 3.3319 -0.8911 15 7 4.4799 3.0530 -2.2444 16 6 3.7998 4.1324 -2.9728 17 6 5.8196 2.8088 -2.7953 18 1 6.3079 2.0179 -2.2260 19 6 6.6501 4.0905 -2.7037 20 6 5.7007 2.3893 -4.2378 21 1 5.7966 3.1240 -5.0236 22 6 5.4694 1.0675 -4.5546 23 7 5.4858 0.6798 -5.8111 24 14 5.1326 -0.1727 -3.1988 25 1 3.6859 -0.1594 -2.8640 26 1 5.5213 -1.5293 -3.6612 27 1 5.9229 0.1848 -1.9935 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8639 0.7239 -0.9311 34 1 3.8507 0.5674 0.8419 35 1 4.2393 3.3345 5.8351 36 1 3.1915 1.0253 5.6289 37 1 4.2790 5.0840 -2.7428 38 1 3.8629 3.9433 -4.0445 39 1 2.7530 4.1705 -2.6716 40 1 6.1185 4.9040 -3.1976 41 1 6.8113 4.3449 -1.6561 42 1 7.6122 3.9357 -3.1922 43 1 5.3234 -0.2502 -6.0339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772270682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:23 Heat of formation + Delta-G solvation = 113.097139 kcal Electronic energy + Delta-G solvation = -28116.102036 eV Core-core repulsion = 24326.453611 eV Total energy + Delta-G solvation = -3789.648425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.76040 -39.59721 -38.23519 -37.48233 -35.23572 -32.80726 -31.64894 -30.20316 -29.83917 -28.70097 -26.62345 -25.90630 -25.68031 -25.11893 -23.73226 -22.39465 -21.31874 -19.85045 -19.16090 -18.55579 -17.23862 -17.12196 -16.43289 -16.37604 -16.18940 -15.76775 -15.38139 -15.13830 -14.78153 -14.63234 -14.20925 -13.85871 -13.77322 -13.46357 -13.22071 -12.72701 -12.58515 -12.17721 -12.00709 -11.73015 -11.55494 -11.48563 -11.34930 -11.29114 -10.94476 -10.77001 -10.58192 -10.26100 -10.08278 -9.99833 -9.92850 -9.83398 -9.78661 -9.48952 -9.26150 -8.82716 -8.39049 -7.92543 -6.29497 -4.33875 0.07438 0.87332 1.36407 1.80313 2.03702 2.63216 3.15764 3.19063 3.24048 3.26293 3.42681 3.85670 4.25237 4.32563 4.42967 4.58180 4.66558 4.87571 4.93941 5.11461 5.13459 5.16421 5.18704 5.27370 5.41587 5.44884 5.48151 5.58437 5.81419 5.96994 6.09041 6.17333 6.21797 6.47093 6.48669 6.60918 6.71535 6.82395 6.95067 7.09590 7.37318 7.43255 7.64354 7.93049 8.34223 8.75403 8.84726 9.33231 10.80585 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.004917 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.132439 B = 5692.742575 C = 6934.492753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.052 3.948 4 C 0.102 3.898 5 N -0.462 5.462 6 C 0.201 3.799 7 C 0.157 3.843 8 N -0.432 5.432 9 C 0.043 3.957 10 C -0.252 4.252 11 S 0.108 5.892 12 N -0.220 5.220 13 N -0.310 5.310 14 C 0.401 3.599 15 N -0.477 5.477 16 C 0.046 3.954 17 C 0.173 3.827 18 H 0.051 0.949 19 C -0.165 4.165 20 C -0.499 4.499 21 H 0.081 0.919 22 C 0.088 3.912 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.263 1.263 26 H -0.291 1.291 27 H -0.269 1.269 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.041 0.959 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.568 -2.188 17.440 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C -0.026 4.026 4 C -0.022 4.022 5 N -0.159 5.159 6 C -0.064 4.064 7 C -0.120 4.120 8 N -0.148 5.148 9 C -0.109 4.109 10 C -0.392 4.392 11 S 0.360 5.640 12 N -0.065 5.065 13 N -0.156 5.156 14 C 0.047 3.953 15 N -0.205 5.205 16 C -0.101 4.101 17 C 0.071 3.929 18 H 0.068 0.932 19 C -0.224 4.224 20 C -0.537 4.537 21 H 0.099 0.901 22 C -0.118 4.118 23 N -0.518 5.518 24 Si 0.709 3.291 25 H -0.188 1.188 26 H -0.218 1.218 27 H -0.195 1.195 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.113 0.887 35 H 0.198 0.802 36 H 0.200 0.800 37 H 0.059 0.941 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.274 -1.973 16.757 19.253 hybrid contribution -0.509 -0.961 1.513 1.864 sum -9.784 -2.935 18.270 20.931 Atomic orbital electron populations 1.22792 0.80111 1.03112 1.00320 1.87815 1.20403 1.26241 1.95528 1.22705 0.92164 0.85968 1.01778 1.21834 0.93094 0.80741 1.06487 1.46274 1.47331 1.16200 1.06046 1.20657 1.08846 0.92463 0.84408 1.23727 1.02600 0.93502 0.92206 1.66529 1.18150 1.33266 0.96809 1.21760 0.99668 0.92695 0.96768 1.27284 1.10067 1.01834 0.99996 1.85349 1.58296 1.19436 1.00906 1.74551 1.12578 1.13307 1.06099 1.74946 1.20770 1.19867 1.00045 1.23387 0.94769 0.86202 0.90988 1.60446 1.25244 1.42229 0.92614 1.22196 0.95997 0.91118 1.00783 1.20164 0.81866 0.94574 0.96320 0.93155 1.22339 1.00649 0.98874 1.00515 1.20832 1.49520 0.94454 0.88942 0.90056 1.25057 0.93051 0.98466 0.95250 1.69899 1.46985 1.17563 1.17344 0.86874 0.79741 0.79947 0.82570 1.18807 1.21802 1.19507 0.89114 0.93937 0.93568 0.92776 0.91250 0.86089 0.88711 0.80199 0.80002 0.94088 0.88218 0.93518 0.92900 0.93398 0.92613 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.10 10.70 -35.23 -0.38 -5.48 16 3 C 0.05 0.72 5.98 37.16 0.22 0.94 16 4 C 0.10 1.65 5.79 -4.04 -0.02 1.62 16 5 N -0.46 -8.36 2.84 -114.83 -0.33 -8.68 16 6 C 0.20 3.63 7.98 -153.72 -1.23 2.41 16 7 C 0.16 2.38 7.50 -14.50 -0.11 2.27 16 8 N -0.43 -6.38 10.59 -11.52 -0.12 -6.50 16 9 C 0.04 0.46 11.24 -19.37 -0.22 0.24 16 10 C -0.25 -2.25 11.35 29.16 0.33 -1.92 16 11 S 0.11 1.23 19.53 -107.50 -2.10 -0.87 16 12 N -0.22 -4.48 12.24 32.50 0.40 -4.08 16 13 N -0.31 -6.46 9.78 30.30 0.30 -6.16 16 14 C 0.40 8.04 6.19 -318.98 -1.97 6.06 16 15 N -0.48 -9.91 4.24 -176.11 -0.75 -10.66 16 16 C 0.05 0.87 8.68 60.07 0.52 1.39 16 17 C 0.17 3.92 1.69 -68.87 -0.12 3.80 16 18 H 0.05 1.22 5.75 -51.93 -0.30 0.92 16 19 C -0.16 -3.46 8.38 37.16 0.31 -3.15 16 20 C -0.50 -12.80 7.56 -34.44 -0.26 -13.06 16 21 H 0.08 2.24 8.05 -52.49 -0.42 1.82 16 22 C 0.09 2.34 5.47 -17.82 -0.10 2.24 16 23 N -0.88 -24.98 13.96 55.43 0.77 -24.21 16 24 Si 0.88 20.52 25.03 -169.99 -4.25 16.26 16 25 H -0.26 -5.90 6.73 56.52 0.38 -5.52 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.13 6.12 56.52 0.35 -5.78 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.05 0.68 7.57 -51.93 -0.39 0.29 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.12 2.23 5.12 -51.93 -0.27 1.96 16 34 H 0.09 1.36 5.79 -51.70 -0.30 1.06 16 35 H 0.18 1.31 8.06 -52.48 -0.42 0.88 16 36 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.04 0.76 6.45 -51.93 -0.33 0.42 16 38 H 0.10 1.98 6.80 -51.92 -0.35 1.63 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.07 6.36 -51.93 -0.33 0.74 16 41 H 0.05 1.01 6.26 -51.93 -0.32 0.68 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -30.59 359.10 -8.19 -38.78 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.62 Total: 1.90 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.53 Total: 4.29 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.27 Total: -60.29 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.38 Total: -5.48 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.25 Total: 16.26 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.10 Total: -0.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.59 -8.19 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772270682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.877 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds