Wall clock time and date at job start Tue Mar 31 2020 21:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00395 * 2 1 4 4 C 1.52998 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46821 * 185.07064 * 4 3 2 6 6 C 1.37742 * 127.16671 * 85.80327 * 5 4 3 7 7 C 1.47201 * 126.49667 * 0.02562 * 6 5 4 8 8 N 1.30456 * 125.48432 * 179.71834 * 7 6 5 9 9 C 1.31252 * 116.99551 * 180.02562 * 8 7 6 10 10 C 1.33749 * 115.87463 * 359.97438 * 9 8 7 11 11 S 1.76174 * 125.47969 * 359.73837 * 7 6 5 12 12 N 1.31467 * 107.00857 * 179.76585 * 6 5 4 13 13 N 1.28510 * 109.90305 * 0.22256 * 12 6 5 14 14 C 1.31456 * 110.12232 * 0.02562 * 13 12 6 15 15 N 1.38319 * 126.35256 * 180.02562 * 14 13 12 16 16 C 1.46903 * 110.99535 * 306.84903 * 15 14 13 17 17 C 1.46895 * 110.99853 * 70.80172 * 15 14 13 18 18 H 1.08997 * 109.47214 * 55.00318 * 17 15 14 19 19 C 1.53000 * 109.47390 * 295.00006 * 17 15 14 20 20 C 1.50704 * 109.46999 * 175.00191 * 17 15 14 21 21 H 1.08001 * 120.00001 * 95.20725 * 20 17 15 22 22 C 1.37878 * 120.00118 * 275.21045 * 20 17 15 23 23 N 1.31506 * 120.00109 * 186.14672 * 22 20 17 24 24 Si 1.86805 * 119.99903 * 6.14566 * 22 20 17 25 25 H 1.48504 * 109.46923 * 85.53381 * 24 22 20 26 26 H 1.48494 * 109.47125 * 205.53770 * 24 22 20 27 27 H 1.48502 * 109.46997 * 325.53818 * 24 22 20 28 28 H 1.08992 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47035 * 300.00161 * 1 2 3 30 30 H 1.09007 * 109.46776 * 59.99712 * 1 2 3 31 31 H 1.09000 * 109.46826 * 59.99717 * 3 2 1 32 32 H 1.09007 * 109.47120 * 300.00265 * 3 2 1 33 33 H 1.09002 * 109.47066 * 65.07382 * 4 3 2 34 34 H 1.08991 * 109.47259 * 305.07325 * 4 3 2 35 35 H 1.08003 * 122.06256 * 179.72922 * 9 8 7 36 36 H 1.08000 * 125.87981 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.47138 * 53.61431 * 16 15 14 38 38 H 1.09008 * 109.46361 * 173.61573 * 16 15 14 39 39 H 1.08994 * 109.46970 * 293.60668 * 16 15 14 40 40 H 1.09006 * 109.47002 * 305.01350 * 19 17 15 41 41 H 1.09000 * 109.46996 * 65.01113 * 19 17 15 42 42 H 1.08999 * 109.47382 * 185.01292 * 19 17 15 43 43 H 0.97004 * 119.99878 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1309 2.5175 0.1227 6 6 4.3876 3.2110 1.2848 7 6 4.1149 2.7521 2.6566 8 7 4.3713 3.4242 3.7450 9 6 4.0590 2.8536 4.8850 10 6 3.5084 1.6378 4.7977 11 16 3.3904 1.2066 3.0929 12 7 4.9274 4.3581 0.9369 13 7 5.0191 4.4281 -0.3430 14 6 4.5437 3.3319 -0.8911 15 7 4.4799 3.0530 -2.2444 16 6 3.7998 4.1324 -2.9728 17 6 5.8196 2.8088 -2.7953 18 1 6.3079 2.0179 -2.2260 19 6 6.6501 4.0905 -2.7037 20 6 5.7007 2.3893 -4.2378 21 1 5.7966 3.1240 -5.0236 22 6 5.4694 1.0675 -4.5546 23 7 5.4858 0.6798 -5.8111 24 14 5.1326 -0.1727 -3.1988 25 1 3.6859 -0.1594 -2.8640 26 1 5.5213 -1.5293 -3.6612 27 1 5.9229 0.1848 -1.9935 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8639 0.7239 -0.9311 34 1 3.8507 0.5674 0.8419 35 1 4.2393 3.3345 5.8351 36 1 3.1915 1.0253 5.6289 37 1 4.2790 5.0840 -2.7428 38 1 3.8629 3.9433 -4.0445 39 1 2.7530 4.1705 -2.6716 40 1 6.1185 4.9040 -3.1976 41 1 6.8113 4.3449 -1.6561 42 1 7.6122 3.9357 -3.1922 43 1 5.3234 -0.2502 -6.0339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772270682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:22 Heat of formation + Delta-G solvation = 93.086297 kcal Electronic energy + Delta-G solvation = -28116.969771 eV Core-core repulsion = 24326.453611 eV Total energy + Delta-G solvation = -3790.516160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -44.19332 -40.53054 -39.23296 -39.15417 -36.53812 -34.74725 -32.90805 -31.70396 -31.11281 -29.98053 -27.60577 -27.51389 -27.04322 -26.62409 -24.89253 -23.58235 -22.84931 -21.33594 -20.38088 -19.56979 -19.12000 -18.37300 -17.73677 -17.50165 -17.42870 -16.85995 -16.70885 -16.55704 -15.97266 -15.71062 -15.58584 -15.31765 -14.97591 -14.85676 -14.45776 -14.35366 -13.84178 -13.70367 -13.38409 -13.06504 -12.93728 -12.89814 -12.71451 -12.52098 -12.41938 -12.35876 -12.09361 -11.78175 -11.67867 -11.53145 -11.19862 -11.10565 -10.92073 -10.89505 -10.83191 -10.46322 -9.70247 -9.45550 -8.34799 -6.42938 -0.92177 -0.06984 0.49415 0.56064 0.72051 1.30891 1.34833 1.40539 1.43898 1.96129 2.31481 2.38337 2.59816 2.90691 3.18002 3.25448 3.57376 3.58263 3.82964 3.92446 4.05685 4.13748 4.29514 4.30572 4.37805 4.41841 4.46154 4.49301 4.52034 4.59517 4.69328 4.76636 4.80464 4.81460 5.00703 5.07263 5.17409 5.30205 5.35007 5.49973 5.87652 5.91777 6.15643 6.43554 6.54228 6.67955 7.27484 7.40025 8.78668 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.004917 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.132439 B = 5692.742575 C = 6934.492753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.098 3.902 5 N -0.460 5.460 6 C 0.228 3.772 7 C 0.099 3.901 8 N -0.451 5.451 9 C 0.022 3.978 10 C -0.209 4.209 11 S 0.140 5.860 12 N -0.263 5.263 13 N -0.325 5.325 14 C 0.382 3.618 15 N -0.478 5.478 16 C 0.051 3.949 17 C 0.182 3.818 18 H 0.038 0.962 19 C -0.154 4.154 20 C -0.496 4.496 21 H 0.051 0.949 22 C 0.043 3.957 23 N -0.927 5.927 24 Si 0.930 3.070 25 H -0.249 1.249 26 H -0.292 1.292 27 H -0.263 1.263 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.213 0.787 36 H 0.229 0.771 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.363 -3.665 21.545 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.017 4.017 4 C -0.025 4.025 5 N -0.155 5.155 6 C -0.039 4.039 7 C -0.176 4.176 8 N -0.168 5.168 9 C -0.129 4.129 10 C -0.349 4.349 11 S 0.391 5.609 12 N -0.106 5.106 13 N -0.170 5.170 14 C 0.026 3.974 15 N -0.205 5.205 16 C -0.095 4.095 17 C 0.079 3.921 18 H 0.056 0.944 19 C -0.213 4.213 20 C -0.535 4.535 21 H 0.070 0.930 22 C -0.159 4.159 23 N -0.566 5.566 24 Si 0.757 3.243 25 H -0.174 1.174 26 H -0.219 1.219 27 H -0.188 1.188 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.229 0.771 36 H 0.245 0.755 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.081 -3.423 20.857 23.864 hybrid contribution -0.039 -0.524 0.532 0.748 sum -11.120 -3.947 21.389 24.427 Atomic orbital electron populations 1.23058 0.78130 1.04714 1.01226 1.87791 1.22513 1.25629 1.95655 1.22535 0.90622 0.86529 1.01997 1.21964 0.94660 0.79814 1.06078 1.46284 1.47115 1.16532 1.05584 1.21148 1.05771 0.91313 0.85644 1.23520 1.06864 0.96205 0.91042 1.66490 1.17701 1.34722 0.97897 1.22273 1.00423 0.93646 0.96604 1.27912 1.06239 1.00984 0.99720 1.85217 1.56484 1.16596 1.02571 1.74479 1.15238 1.15202 1.05728 1.74817 1.20991 1.20511 1.00718 1.23079 0.96654 0.86985 0.90662 1.60018 1.23875 1.43140 0.93506 1.22171 0.97111 0.90619 0.99619 1.19876 0.83070 0.94818 0.94341 0.94438 1.22220 1.00372 0.98263 1.00490 1.20853 1.48943 0.93894 0.89821 0.93048 1.25684 0.93066 1.00185 0.96936 1.70007 1.49287 1.18045 1.19213 0.86080 0.80397 0.77631 0.80238 1.17406 1.21882 1.18844 0.87223 0.92121 0.93597 0.91306 0.92285 0.88344 0.86903 0.77056 0.75475 0.93997 0.89733 0.91385 0.92514 0.93365 0.92684 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -9.59 10.70 -148.98 -1.59 -11.19 16 3 C 0.06 1.58 5.98 71.98 0.43 2.01 16 4 C 0.10 3.01 5.79 86.38 0.50 3.51 16 5 N -0.46 -16.31 2.84 -517.21 -1.47 -17.78 16 6 C 0.23 8.07 7.98 135.91 1.09 9.16 16 7 C 0.10 2.81 7.50 87.25 0.65 3.46 16 8 N -0.45 -12.31 10.59 -190.35 -2.02 -14.33 16 9 C 0.02 0.37 11.24 83.76 0.94 1.31 16 10 C -0.21 -2.58 11.35 66.80 0.76 -1.82 16 11 S 0.14 2.65 19.53 -56.49 -1.10 1.55 16 12 N -0.26 -10.76 12.24 -51.08 -0.63 -11.38 16 13 N -0.32 -13.70 9.78 -58.05 -0.57 -14.26 16 14 C 0.38 15.36 6.19 260.15 1.61 16.98 16 15 N -0.48 -20.06 4.24 -711.08 -3.01 -23.07 16 16 C 0.05 1.97 8.68 127.69 1.11 3.08 16 17 C 0.18 8.46 1.69 44.17 0.07 8.53 16 18 H 0.04 1.84 5.75 -2.39 -0.01 1.82 16 19 C -0.15 -6.63 8.38 71.98 0.60 -6.03 16 20 C -0.50 -26.36 7.56 25.60 0.19 -26.16 16 21 H 0.05 2.98 8.05 -2.91 -0.02 2.96 16 22 C 0.04 2.35 5.47 84.66 0.46 2.81 16 23 N -0.93 -54.21 13.96 21.45 0.30 -53.91 16 24 Si 0.93 42.75 25.03 68.60 1.72 44.47 16 25 H -0.25 -10.83 6.73 99.48 0.67 -10.16 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.26 -11.71 6.12 99.48 0.61 -11.10 16 28 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 1.56 7.57 -2.39 -0.02 1.54 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.10 3.52 5.12 -2.39 -0.01 3.50 16 34 H 0.11 2.98 5.79 -2.54 -0.01 2.97 16 35 H 0.21 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.04 1.58 6.45 -2.39 -0.02 1.56 16 38 H 0.08 3.47 6.80 -2.38 -0.02 3.46 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 2.35 6.36 -2.38 -0.02 2.33 16 41 H 0.05 2.06 6.26 -2.39 -0.01 2.05 16 42 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.56 359.10 2.21 -67.35 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.91 Total: 14.07 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 9.67 Total: 18.48 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -7.39 Total: -134.73 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -1.59 Total: -11.19 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.72 Total: 44.47 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.10 Total: 1.55 kcal Total: -69.56 2.21 -67.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772270682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.434 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds