Wall clock time and date at job start Tue Mar 31 2020 21:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 H 1.08997 * 109.60138 * 304.68110 * 3 2 1 5 5 C 1.53182 * 109.60515 * 184.18669 * 3 2 1 6 6 N 1.46470 * 109.90108 * 177.60530 * 5 3 2 7 7 C 1.46900 * 111.00106 * 197.00363 * 6 5 3 8 8 C 1.50703 * 109.47068 * 300.18971 * 7 6 5 9 9 C 1.38625 * 119.75034 * 270.02581 * 8 7 6 10 10 C 1.37624 * 120.24920 * 180.02562 * 9 8 7 11 11 C 1.40721 * 119.74385 * 359.97365 * 10 9 8 12 12 C 1.41390 * 120.24314 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99807 * 155.58984 * 12 11 10 14 14 C 1.39945 * 119.99956 * 335.58323 * 12 11 10 15 15 N 1.30826 * 120.00259 * 341.94073 * 14 12 11 16 16 Si 1.86806 * 119.99911 * 161.93842 * 14 12 11 17 17 H 1.48501 * 109.46904 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47094 * 120.00303 * 16 14 12 19 19 H 1.48500 * 109.46961 * 240.00232 * 16 14 12 20 20 C 1.40715 * 119.50873 * 0.02562 * 11 10 9 21 21 C 1.37616 * 119.74699 * 359.97438 * 20 11 10 22 22 C 1.46468 * 112.46222 * 71.96566 * 6 5 3 23 23 C 1.53178 * 109.90310 * 288.03821 * 22 6 5 24 24 H 1.09005 * 109.60110 * 302.88177 * 23 22 6 25 25 C 1.53000 * 109.60579 * 182.39403 * 23 22 6 26 26 S 1.81819 * 109.59927 * 64.99936 * 3 2 1 27 27 O 1.42095 * 108.70424 * 57.82057 * 26 3 2 28 28 O 1.42095 * 108.70318 * 286.32795 * 26 3 2 29 29 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47138 * 299.99510 * 1 2 3 31 31 H 1.08994 * 109.47091 * 60.00287 * 1 2 3 32 32 H 1.09000 * 109.47434 * 239.99781 * 2 1 3 33 33 H 1.09008 * 109.47081 * 119.99861 * 2 1 3 34 34 H 1.09008 * 109.39594 * 57.47698 * 5 3 2 35 35 H 1.09002 * 109.39914 * 297.74161 * 5 3 2 36 36 H 1.09000 * 109.46902 * 180.19142 * 7 6 5 37 37 H 1.08996 * 109.47029 * 60.19085 * 7 6 5 38 38 H 1.07999 * 119.88017 * 359.97438 * 9 8 7 39 39 H 1.08000 * 120.12691 * 180.25186 * 10 9 8 40 40 H 0.96997 * 120.00151 * 180.02562 * 15 14 12 41 41 H 1.08000 * 120.12604 * 179.97438 * 20 11 10 42 42 H 1.08001 * 119.87612 * 179.97438 * 21 20 11 43 43 H 1.09007 * 109.39761 * 48.16776 * 22 6 5 44 44 H 1.08998 * 109.40123 * 167.99501 * 22 6 5 45 45 H 1.08995 * 109.46857 * 59.99838 * 25 23 22 46 46 H 1.09000 * 109.46843 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.46750 * 299.99975 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6111 1.9820 -0.8444 5 6 3.5682 1.4473 -0.1053 6 7 4.0596 2.8259 -0.1633 7 6 5.4408 2.8720 -0.6613 8 6 6.3324 2.0753 0.2560 9 6 6.9433 2.6982 1.3333 10 6 7.7600 1.9807 2.1772 11 6 7.9732 0.6095 1.9436 12 6 8.8106 -0.1377 2.8036 13 1 8.6812 -1.2065 2.8887 14 6 9.8070 0.5078 3.5445 15 7 10.2062 1.7051 3.2002 16 14 10.5670 -0.3403 5.0254 17 1 9.9466 -1.6779 5.2021 18 1 12.0279 -0.4973 4.8101 19 1 10.3311 0.4799 6.2406 20 6 7.3478 -0.0122 0.8470 21 6 6.5353 0.7250 0.0162 22 6 3.9421 3.5165 1.1230 23 6 2.4709 3.8269 1.4157 24 1 2.0541 4.4220 0.6030 25 6 2.3613 4.6004 2.7312 26 16 1.5608 2.2588 1.5524 27 8 2.0932 1.5165 2.6408 28 8 0.1677 2.5354 1.5105 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.8705 0.9169 -1.0084 35 1 3.9927 0.9479 0.7656 36 1 5.7820 3.9068 -0.6911 37 1 5.4797 2.4476 -1.6645 38 1 6.7786 3.7508 1.5105 39 1 8.2317 2.4671 3.0183 40 1 10.8972 2.1523 3.7135 41 1 7.5049 -1.0639 0.6581 42 1 6.0546 0.2501 -0.8263 43 1 4.3420 2.8808 1.9130 44 1 4.5070 4.4479 1.0869 45 1 2.9195 5.5332 2.6517 46 1 1.3137 4.8198 2.9375 47 1 2.7727 3.9988 3.5417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347316563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:13 Heat of formation + Delta-G solvation = -58.915226 kcal Electronic energy + Delta-G solvation = -28352.961733 eV Core-core repulsion = 24627.101884 eV Total energy + Delta-G solvation = -3725.859849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.15346 -37.20400 -36.83088 -36.05964 -35.36936 -34.12512 -33.05233 -30.55329 -29.43078 -29.02015 -27.14356 -25.59706 -23.98930 -22.95064 -21.73360 -21.24814 -20.89657 -19.84087 -18.69886 -17.39917 -17.06211 -16.75847 -15.79029 -15.58347 -15.34223 -15.11900 -14.75406 -14.26031 -14.03736 -13.74951 -13.63259 -13.39266 -13.26714 -12.97688 -12.72487 -12.51461 -12.39814 -12.28022 -12.10566 -11.93372 -11.89795 -11.71657 -11.64681 -11.37936 -11.25742 -11.20774 -11.16003 -11.08861 -10.93618 -10.70374 -10.50134 -10.36283 -9.84878 -9.80568 -9.48736 -9.21068 -8.23766 -7.56649 -7.41703 -6.85597 -4.44327 0.04506 2.63123 2.70713 2.96367 3.03144 3.07397 3.10247 3.58218 3.75286 3.87133 4.18621 4.36078 4.50029 4.53671 4.61828 4.88324 4.91113 5.00521 5.17200 5.22834 5.35477 5.45598 5.49509 5.59521 5.62572 5.72663 5.78184 5.79291 5.84494 5.89929 5.90846 5.97637 6.07150 6.10705 6.19979 6.24840 6.28234 6.84350 6.96392 7.04605 7.06632 7.21283 7.28242 7.50859 7.74495 7.96423 7.99199 8.20287 8.54846 8.80435 8.87673 10.08538 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015580 B = 0.003354 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.777509 B = 8346.942057 C = 8419.247002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.109 4.109 3 C -0.553 4.553 4 H 0.141 0.859 5 C 0.070 3.930 6 N -0.550 5.550 7 C 0.122 3.878 8 C -0.263 4.263 9 C -0.089 4.089 10 C -0.165 4.165 11 C 0.115 3.885 12 C -0.460 4.460 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.789 5.789 16 Si 0.907 3.093 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.227 4.227 21 C -0.077 4.077 22 C 0.068 3.932 23 C -0.558 4.558 24 H 0.140 0.860 25 C -0.141 4.141 26 S 2.404 3.596 27 O -0.931 6.931 28 O -0.947 6.947 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.281 0.719 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 3.555 -5.230 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.148 4.148 3 C -0.664 4.664 4 H 0.159 0.841 5 C -0.059 4.059 6 N -0.272 5.272 7 C -0.003 4.003 8 C -0.266 4.266 9 C -0.108 4.108 10 C -0.185 4.185 11 C 0.112 3.888 12 C -0.489 4.489 13 H 0.097 0.903 14 C -0.142 4.142 15 N -0.414 5.414 16 Si 0.731 3.269 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.096 4.096 22 C -0.061 4.061 23 C -0.669 4.669 24 H 0.158 0.842 25 C -0.200 4.200 26 S 2.587 3.413 27 O -0.928 6.928 28 O -0.944 6.944 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.676 3.694 -4.822 14.964 hybrid contribution 1.525 -0.357 0.447 1.629 sum -12.150 3.337 -4.375 13.338 Atomic orbital electron populations 1.22141 0.94788 1.03126 1.03523 1.21331 0.96234 0.92168 1.05019 1.30080 1.05922 1.08661 1.21691 0.84119 1.21831 0.88510 0.90809 1.04786 1.61748 1.23707 1.15243 1.26550 1.20792 0.83441 0.99506 0.96593 1.19590 1.09413 0.94960 1.02633 1.20517 0.97594 0.97108 0.95560 1.21301 1.00898 0.95339 1.00943 1.17643 0.89369 0.92160 0.89617 1.19674 1.12933 0.95738 1.20528 0.90316 1.25930 0.95936 0.94681 0.97642 1.69829 1.23079 1.13307 1.35212 0.86279 0.78887 0.80708 0.81016 1.18295 1.19941 1.19592 1.20971 1.06404 0.98714 0.98600 1.20368 0.98049 0.93416 0.97796 1.21865 0.91076 1.01204 0.91966 1.30009 1.09951 1.20044 1.06847 0.84158 1.21587 1.03290 1.01536 0.93558 1.08721 0.76024 0.78400 0.78148 1.93596 1.80619 1.69303 1.49293 1.93539 1.28965 1.84764 1.87156 0.91324 0.91501 0.91632 0.89342 0.90035 0.88731 0.91348 0.91023 0.91026 0.89702 0.86555 0.90824 0.89074 0.89654 0.91409 0.88745 0.89880 0.91195 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.58 37.16 0.36 -1.50 16 2 C -0.11 -1.20 5.40 -26.73 -0.14 -1.34 16 3 C -0.55 -6.50 2.67 -26.64 -0.07 -6.57 16 4 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 5 C 0.07 0.95 3.44 -3.96 -0.01 0.93 16 6 N -0.55 -7.51 4.60 -236.56 -1.09 -8.60 16 7 C 0.12 1.86 5.43 -4.97 -0.03 1.83 16 8 C -0.26 -5.10 4.21 -104.33 -0.44 -5.54 16 9 C -0.09 -1.90 8.39 -39.66 -0.33 -2.24 16 10 C -0.17 -4.11 8.69 -38.87 -0.34 -4.45 16 11 C 0.11 2.96 5.57 -106.82 -0.60 2.37 16 12 C -0.46 -11.95 9.05 -37.74 -0.34 -12.29 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 14 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 15 N -0.79 -19.87 10.97 55.55 0.61 -19.26 16 16 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 C -0.23 -5.34 9.80 -38.87 -0.38 -5.72 16 21 C -0.08 -1.58 8.29 -39.66 -0.33 -1.91 16 22 C 0.07 0.93 3.67 -3.97 -0.01 0.92 16 23 C -0.56 -6.58 3.23 -26.64 -0.09 -6.66 16 24 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 25 C -0.14 -1.53 9.19 37.16 0.34 -1.18 16 26 S 2.40 33.09 3.68 -107.50 -0.40 32.70 16 27 O -0.93 -16.21 17.91 -57.80 -1.04 -17.24 16 28 O -0.95 -14.35 16.11 -57.80 -0.93 -15.28 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.80 5.82 -51.93 -0.30 0.50 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.97 8.03 -51.92 -0.42 0.55 16 34 H 0.09 1.19 7.53 -51.92 -0.39 0.80 16 35 H 0.07 1.12 7.07 -51.93 -0.37 0.75 16 36 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 37 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 38 H 0.08 1.63 8.02 -52.49 -0.42 1.21 16 39 H 0.12 3.02 6.18 -52.49 -0.32 2.70 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 41 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 42 H 0.09 1.51 7.66 -52.49 -0.40 1.11 16 43 H 0.07 1.11 7.10 -51.93 -0.37 0.74 16 44 H 0.09 1.20 7.83 -51.93 -0.41 0.79 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -29.60 376.49 -12.28 -41.88 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.58 Total: 8.38 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: -2.50 Total: -41.57 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: -0.48 Total: -27.86 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.97 Total: -32.53 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 16 Polarization: 33.09 SS G_CDS: -0.40 Total: 32.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.60 -12.28 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347316563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.036 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds