Wall clock time and date at job start Tue Mar 31 2020 21:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46881 * 2 1 4 4 H 1.08998 * 109.52320 * 304.92096 * 3 2 1 5 5 C 1.53188 * 109.49519 * 65.00055 * 3 2 1 6 6 N 1.46927 * 108.89019 * 174.65742 * 5 3 2 7 7 C 1.34780 * 120.63078 * 126.34097 * 6 5 3 8 8 O 1.21581 * 120.00173 * 352.32960 * 7 6 5 9 9 C 1.47623 * 119.99781 * 172.32764 * 7 6 5 10 10 N 1.33052 * 120.53467 * 352.89219 * 9 7 6 11 11 N 1.28707 * 120.37161 * 179.97438 * 10 9 7 12 12 C 1.32947 * 121.55352 * 0.02562 * 11 10 9 13 13 O 1.35289 * 119.46761 * 180.02562 * 12 11 10 14 14 N 1.32464 * 121.05906 * 359.97438 * 12 11 10 15 15 C 1.32860 * 119.51730 * 359.77316 * 14 12 11 16 16 O 1.35286 * 120.72422 * 180.25396 * 15 14 12 17 17 C 1.46927 * 118.74163 * 306.32189 * 6 5 3 18 18 C 1.53190 * 108.77404 * 53.60787 * 17 6 5 19 19 C 1.53050 * 109.31268 * 305.36424 * 18 17 6 20 20 H 1.09000 * 109.45881 * 301.36374 * 19 18 17 21 21 N 1.46496 * 109.45752 * 181.38667 * 19 18 17 22 22 C 1.36932 * 120.00282 * 85.00925 * 21 19 18 23 23 H 1.07997 * 119.99759 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00593 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00332 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99505 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47321 * 90.00517 * 26 24 22 28 28 H 1.48508 * 109.46816 * 210.00247 * 26 24 22 29 29 H 1.48496 * 109.47256 * 330.00045 * 26 24 22 30 30 H 1.09007 * 109.47098 * 299.99945 * 1 2 3 31 31 H 1.08993 * 109.47249 * 59.99843 * 1 2 3 32 32 H 1.08999 * 109.46927 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46765 * 240.00264 * 2 1 3 34 34 H 1.08994 * 109.47244 * 119.99600 * 2 1 3 35 35 H 1.09000 * 109.58835 * 54.80096 * 5 3 2 36 36 H 1.09003 * 109.59088 * 294.51346 * 5 3 2 37 37 H 0.96694 * 114.00711 * 90.00069 * 13 12 11 38 38 H 0.96706 * 114.00005 * 270.22647 * 16 15 14 39 39 H 1.08993 * 109.59200 * 173.39699 * 17 6 5 40 40 H 1.09005 * 109.58483 * 293.82250 * 17 6 5 41 41 H 1.08993 * 109.50340 * 65.31822 * 18 17 6 42 42 H 1.08999 * 109.49681 * 185.39063 * 18 17 6 43 43 H 0.97008 * 119.99922 * 264.99556 * 21 19 18 44 44 H 0.97004 * 119.99965 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6069 1.9820 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2387 3.4668 1.3512 7 6 1.4764 4.5574 1.5655 8 8 0.2649 4.4576 1.5868 9 6 2.1124 5.8731 1.7743 10 7 3.4337 5.9739 1.8937 11 7 3.9851 7.1226 2.0752 12 6 3.2634 8.2367 2.1496 13 8 3.8868 9.4220 2.3408 14 7 1.9438 8.2048 2.0386 15 6 1.3310 7.0419 1.8453 16 8 -0.0150 6.9817 1.7234 17 6 3.6894 3.5941 1.1561 18 6 4.0744 2.8941 -0.1509 19 6 3.5688 1.4499 -0.1197 20 1 4.0018 0.9320 0.7361 21 7 3.9640 0.7676 -1.3543 22 6 5.2031 0.1931 -1.4526 23 1 5.8891 0.2432 -0.6200 24 6 5.5775 -0.4539 -2.6222 25 7 6.7686 -1.0057 -2.7168 26 14 4.3906 -0.5413 -4.0621 27 1 4.5931 0.6370 -4.9428 28 1 4.6399 -1.7851 -4.8342 29 1 2.9953 -0.5455 -3.5539 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.9907 1.5397 2.1546 36 1 0.5494 2.2151 1.3550 37 1 4.1385 9.8707 1.5220 38 1 -0.4809 6.8616 2.5622 39 1 3.9594 4.6486 1.0992 40 1 4.2127 3.1254 1.9896 41 1 3.6224 3.4197 -0.9920 42 1 5.1590 2.8979 -0.2599 43 1 3.3479 0.7227 -2.1022 44 1 7.0301 -1.4582 -3.5341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037887413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:28 Heat of formation + Delta-G solvation = 5.155102 kcal Electronic energy + Delta-G solvation = -30069.516993 eV Core-core repulsion = 25832.434979 eV Total energy + Delta-G solvation = -4237.082014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63744 -40.27623 -38.92977 -38.19808 -37.82953 -35.17539 -34.68066 -33.93482 -32.38811 -31.78970 -29.94433 -28.97355 -26.88465 -25.76663 -24.83338 -23.96964 -22.60513 -20.98520 -20.77576 -20.52847 -20.13589 -19.62602 -18.99662 -17.65689 -17.21604 -16.86788 -16.32942 -16.23171 -15.38844 -15.19382 -14.55510 -14.35582 -14.29776 -14.09118 -13.66097 -13.44647 -13.33059 -13.22686 -13.01795 -12.95056 -12.73186 -12.39807 -12.17792 -12.00681 -11.84395 -11.47616 -11.44506 -11.03567 -10.92055 -10.76064 -10.53767 -10.44665 -10.36344 -10.24950 -10.22199 -9.77875 -9.69569 -9.58173 -8.91146 -8.67159 -7.28010 -5.78989 -3.14346 -0.50226 -0.23490 1.95537 2.11612 2.51239 2.60448 2.89610 3.24153 3.35345 3.38684 3.44124 3.85985 4.01002 4.37169 4.57075 4.76405 4.96680 4.99364 5.14941 5.30169 5.42701 5.46390 5.50056 5.56540 5.70322 5.72995 5.89165 5.93886 5.97675 6.05761 6.16987 6.21120 6.26386 6.30481 6.41209 6.52202 6.59890 6.68818 6.69391 6.77842 6.93660 7.19376 7.59016 7.80742 7.96977 8.40136 9.18384 9.91131 10.10927 11.39303 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.003288 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.813977 B = 8514.331559 C = 9802.411462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.579 5.579 7 C 0.577 3.423 8 O -0.521 6.521 9 C -0.047 4.047 10 N -0.102 5.102 11 N -0.287 5.287 12 C 0.481 3.519 13 O -0.447 6.447 14 N -0.509 5.509 15 C 0.421 3.579 16 O -0.442 6.442 17 C 0.076 3.924 18 C -0.151 4.151 19 C 0.187 3.813 20 H 0.058 0.942 21 N -0.745 5.745 22 C -0.241 4.241 23 H 0.091 0.909 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.423 0.577 38 H 0.423 0.577 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 16.383 11.685 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.129 4.129 4 H 0.089 0.911 5 C -0.004 4.004 6 N -0.310 5.310 7 C 0.360 3.640 8 O -0.396 6.396 9 C -0.199 4.199 10 N 0.040 4.960 11 N -0.148 5.148 12 C 0.176 3.824 13 O -0.250 6.250 14 N -0.252 5.252 15 C 0.223 3.777 16 O -0.250 6.250 17 C -0.048 4.048 18 C -0.192 4.192 19 C 0.077 3.923 20 H 0.076 0.924 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.109 0.891 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.285 0.715 38 H 0.287 0.713 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.436 16.425 11.858 23.263 hybrid contribution -1.469 0.169 -1.356 2.006 sum -12.905 16.594 10.502 23.499 Atomic orbital electron populations 1.21856 0.96596 1.01215 1.01440 1.21458 0.94541 0.95550 1.03557 1.21891 0.97809 0.96334 0.96821 0.91145 1.21887 0.99582 0.80655 0.98263 1.48082 1.09485 1.06090 1.67307 1.17052 0.86222 0.81953 0.78789 1.90829 1.12341 1.84535 1.51900 1.24190 0.93647 0.97338 1.04759 1.74181 1.06983 1.13593 1.01253 1.73954 1.31875 0.95297 1.13705 1.21877 0.84009 0.88304 0.88201 1.84686 1.75775 1.28694 1.35882 1.68193 1.11999 1.29946 1.15074 1.19846 0.87174 0.85411 0.85258 1.84671 1.10730 1.93551 1.36004 1.22990 0.77769 1.04974 0.99034 1.22658 1.02818 0.98435 0.95271 1.20265 0.90440 0.90852 0.90740 0.92363 1.42770 1.16491 1.66412 1.13002 1.19055 0.90372 1.27267 1.00435 0.89128 1.24648 0.96380 1.00303 0.97644 1.69696 1.19154 1.41659 1.27602 0.86607 0.81135 0.77301 0.83793 1.21235 1.21816 1.20277 0.92942 0.93049 0.93020 0.90351 0.91841 0.90736 0.88767 0.71491 0.71310 0.85705 0.90675 0.92592 0.89751 0.80651 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 37.16 0.36 -1.51 16 2 C -0.11 -1.63 5.32 -26.73 -0.14 -1.77 16 3 C -0.11 -1.60 1.94 -90.34 -0.18 -1.78 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.50 5.33 -3.71 -0.02 1.48 16 6 N -0.58 -7.51 2.97 -173.96 -0.52 -8.03 16 7 C 0.58 7.47 7.65 -12.43 -0.10 7.38 16 8 O -0.52 -7.41 14.73 -15.93 -0.23 -7.64 16 9 C -0.05 -0.55 6.70 -82.55 -0.55 -1.10 16 10 N -0.10 -1.20 7.43 33.45 0.25 -0.95 16 11 N -0.29 -3.22 11.60 29.21 0.34 -2.88 16 12 C 0.48 4.72 8.81 -90.58 -0.80 3.93 16 13 O -0.45 -3.21 13.63 -17.56 -0.24 -3.45 16 14 N -0.51 -5.25 10.57 -14.33 -0.15 -5.40 16 15 C 0.42 4.38 7.84 -16.15 -0.13 4.26 16 16 O -0.44 -4.04 11.79 -38.78 -0.46 -4.50 16 17 C 0.08 0.99 5.93 -3.71 -0.02 0.97 16 18 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 19 C 0.19 3.28 2.21 -67.73 -0.15 3.13 16 20 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 21 N -0.74 -16.46 4.15 -53.23 -0.22 -16.68 16 22 C -0.24 -6.46 10.41 -15.06 -0.16 -6.61 16 23 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 24 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -28.66 13.97 55.49 0.78 -27.89 16 26 Si 0.88 21.65 27.73 -169.99 -4.71 16.94 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 30 H 0.05 0.57 6.69 -51.93 -0.35 0.22 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.35 7.25 -51.93 -0.38 0.97 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.19 5.71 -51.93 -0.30 0.89 16 37 H 0.42 0.73 9.06 45.56 0.41 1.14 16 38 H 0.42 1.85 9.06 45.56 0.41 2.26 16 39 H 0.13 1.61 3.94 -139.50 -0.55 1.06 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.36 8.02 5.39 -40.82 -0.22 7.80 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -34.03 358.97 -6.25 -40.28 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.36 Total: 8.91 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -2.13 Total: 5.88 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.47 Total: -61.83 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.93 Total: -15.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.03 -6.25 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.431 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds