Wall clock time and date at job start Tue Mar 31 2020 20:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47095 * 2 1 4 4 C 1.52995 * 109.47018 * 120.00060 * 2 1 3 5 5 O 1.42967 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.43087 * 113.77197 * 181.20987 * 5 4 2 7 7 C 1.53255 * 108.94830 * 57.96397 * 6 5 4 8 8 C 1.50700 * 109.57756 * 65.28559 * 7 6 5 9 9 O 1.21293 * 119.99625 * 0.02562 * 8 7 6 10 10 N 1.34767 * 120.00568 * 180.02562 * 8 7 6 11 11 C 1.40005 * 120.00430 * 175.47087 * 10 8 7 12 12 C 1.39369 * 119.91050 * 215.50865 * 11 10 8 13 13 C 1.38368 * 120.47239 * 179.74097 * 12 11 10 14 14 C 1.38006 * 120.28275 * 0.27711 * 13 12 11 15 15 F 1.35102 * 120.09266 * 179.97438 * 14 13 12 16 16 C 1.41003 * 119.81488 * 359.97438 * 14 13 12 17 17 C 1.41296 * 120.23147 * 180.02562 * 16 14 13 18 18 H 1.08009 * 120.00026 * 24.72223 * 17 16 14 19 19 C 1.39924 * 120.00188 * 204.72798 * 17 16 14 20 20 N 1.30847 * 120.00232 * 15.35948 * 19 17 16 21 21 Si 1.86809 * 120.00046 * 195.35656 * 19 17 16 22 22 H 1.48500 * 109.46695 * 59.99898 * 21 19 17 23 23 H 1.48497 * 109.47044 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46972 * 299.99968 * 21 19 17 25 25 C 1.38144 * 119.91342 * 35.76211 * 11 10 8 26 26 C 1.53260 * 108.84572 * 305.48110 * 7 6 5 27 27 O 1.42968 * 109.47430 * 60.00455 * 4 2 1 28 28 H 1.08995 * 109.46707 * 300.00076 * 1 2 3 29 29 H 1.09000 * 109.46746 * 59.99746 * 1 2 3 30 30 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47466 * 240.00399 * 2 1 3 32 32 H 1.08993 * 109.47136 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47381 * 300.00545 * 3 2 1 34 34 H 1.09005 * 109.47072 * 59.99915 * 3 2 1 35 35 H 1.09005 * 109.47080 * 300.00043 * 4 2 1 36 36 H 1.09003 * 109.55331 * 298.12360 * 6 5 4 37 37 H 1.09002 * 109.56257 * 177.80873 * 6 5 4 38 38 H 1.09005 * 109.58007 * 185.54314 * 7 6 5 39 39 H 0.97008 * 119.99551 * 355.46414 * 10 8 7 40 40 H 1.08000 * 119.76590 * 0.02562 * 12 11 10 41 41 H 1.07993 * 119.85966 * 180.25325 * 13 12 11 42 42 H 0.96998 * 120.00226 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.14087 * 359.97438 * 25 11 10 44 44 H 1.08998 * 109.56396 * 174.35877 * 26 7 6 45 45 H 1.09006 * 109.55626 * 294.68795 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4697 -0.7207 1.2495 6 6 4.0465 -1.3992 2.3695 7 6 3.5439 -2.8469 2.3870 8 6 4.0594 -3.5752 1.1726 9 8 4.7606 -2.9957 0.3703 10 7 3.7414 -4.8702 0.9778 11 6 4.1404 -5.5202 -0.1963 12 6 3.3101 -6.4768 -0.7776 13 6 3.6905 -7.1224 -1.9408 14 6 4.9009 -6.8295 -2.5354 15 9 5.2688 -7.4626 -3.6708 16 6 5.7527 -5.8675 -1.9546 17 6 6.9938 -5.5604 -2.5562 18 1 7.1369 -5.7260 -3.6139 19 6 8.0374 -5.0418 -1.7817 20 7 7.9842 -5.1184 -0.4766 21 14 9.5069 -4.2403 -2.6112 22 1 9.0484 -3.0809 -3.4178 23 1 10.4660 -3.7751 -1.5772 24 1 10.1741 -5.2273 -3.4977 25 6 5.3584 -5.2156 -0.7725 26 6 2.0114 -2.8393 2.3690 27 8 1.5636 -2.0692 1.2492 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8935 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -0.2074 2.1392 36 1 3.7500 -0.8988 3.2914 37 1 5.1329 -1.3911 2.2812 38 1 3.8979 -3.3456 3.2894 39 1 3.2360 -5.3521 1.6512 40 1 2.3609 -6.7124 -0.3195 41 1 3.0375 -7.8590 -2.3851 42 1 8.7075 -4.7586 0.0603 43 1 6.0030 -4.4769 -0.3195 44 1 1.6423 -3.8610 2.2802 45 1 1.6379 -2.3934 3.2908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183178700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:02 Heat of formation + Delta-G solvation = -161.318773 kcal Electronic energy + Delta-G solvation = -30329.094790 eV Core-core repulsion = 26032.581214 eV Total energy + Delta-G solvation = -4296.513576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -47.12958 -40.65437 -39.00306 -36.97278 -35.73271 -35.35030 -34.26118 -33.19821 -32.13528 -29.72860 -27.93761 -27.28766 -25.94109 -25.68282 -25.33961 -23.10773 -21.55703 -20.55625 -20.48708 -19.33217 -17.84977 -17.30122 -16.96066 -16.84946 -15.97777 -15.84545 -15.54026 -15.35834 -15.01192 -14.48729 -14.38524 -14.03428 -13.88768 -13.70608 -13.50349 -13.30751 -12.98015 -12.89883 -12.59715 -12.33505 -12.28700 -11.94487 -11.81292 -11.65792 -11.56473 -11.28985 -11.12523 -11.09624 -11.01487 -10.90593 -10.70687 -10.46270 -10.25203 -10.05725 -9.79965 -9.69413 -9.34051 -9.10458 -8.73242 -7.51611 -6.87753 -6.70650 -4.37627 2.54720 2.83226 3.09802 3.11996 3.15408 3.26188 3.53998 3.58168 3.72768 3.95979 4.43138 4.58081 4.60826 4.66878 4.81745 4.95781 5.02016 5.10303 5.12948 5.23039 5.35232 5.51085 5.52341 5.57398 5.65645 5.73626 5.79032 5.82897 5.95290 6.03507 6.13523 6.20191 6.27059 6.44309 6.79871 6.85308 6.95180 7.01732 7.16336 7.20108 7.48481 7.60005 7.71848 8.05308 8.14796 8.32076 8.52505 8.78927 8.86613 8.90761 10.16385 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003849 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.592939 B = 7272.177035 C = 8127.309354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.250 3.750 5 O -0.368 6.368 6 C 0.081 3.919 7 C -0.186 4.186 8 C 0.517 3.483 9 O -0.491 6.491 10 N -0.667 5.667 11 C 0.137 3.863 12 C -0.242 4.242 13 C -0.108 4.108 14 C -0.043 4.043 15 F -0.165 7.165 16 C 0.094 3.906 17 C -0.447 4.447 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.784 5.784 21 Si 0.914 3.086 22 H -0.261 1.261 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.137 4.137 26 C 0.070 3.930 27 O -0.383 6.383 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.395 0.605 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.282 0.718 43 H 0.153 0.847 44 H 0.102 0.898 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 8.993 10.808 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.199 4.199 4 C 0.155 3.845 5 O -0.288 6.288 6 C 0.004 3.996 7 C -0.208 4.208 8 C 0.302 3.698 9 O -0.364 6.364 10 N -0.311 5.311 11 C 0.044 3.956 12 C -0.263 4.263 13 C -0.128 4.128 14 C -0.064 4.064 15 F -0.144 7.144 16 C 0.090 3.910 17 C -0.476 4.476 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.409 5.409 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.158 4.158 26 C -0.008 4.008 27 O -0.303 6.303 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.228 0.772 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.171 0.829 44 H 0.120 0.880 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.456 9.524 10.121 17.392 hybrid contribution 0.426 -0.304 0.479 0.710 sum -10.031 9.219 10.600 17.262 Atomic orbital electron populations 1.21744 0.93826 1.02679 1.01610 1.21018 0.96026 0.96031 0.97024 1.21738 1.02371 0.94232 1.01540 1.23459 0.80189 0.82844 0.98050 1.88251 1.19680 1.74679 1.46187 1.22404 1.00276 0.88296 0.88633 1.22686 0.98757 0.99505 0.99823 1.19935 0.81191 0.81688 0.87022 1.90790 1.34893 1.66177 1.44494 1.43274 1.56555 1.10874 1.20367 1.17581 0.94171 0.95855 0.87943 1.19832 1.00123 1.06289 1.00072 1.20216 0.95280 1.00822 0.96481 1.17865 0.98248 1.01201 0.89050 1.91258 1.92356 1.81360 1.49444 1.17523 0.92450 0.88999 0.92076 1.19491 0.95444 1.35965 0.96658 0.89882 1.25904 1.00139 0.93579 0.94610 1.69775 1.31971 1.33348 1.05772 0.86257 0.79709 0.80375 0.79805 1.18588 1.20208 1.18877 1.21454 0.93666 1.02287 0.98418 1.22577 0.90911 0.97662 0.89603 1.88166 1.71497 1.24555 1.46076 0.92956 0.92089 0.91599 0.89257 0.91374 0.92094 0.92989 0.93237 0.92540 0.87392 0.86789 0.77189 0.88436 0.87897 0.90690 0.82941 0.87971 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.05 37.16 0.34 -1.08 16 2 C -0.08 -1.02 2.93 -90.62 -0.27 -1.29 16 3 C -0.14 -1.49 9.05 37.16 0.34 -1.16 16 4 C 0.25 3.29 2.74 37.15 0.10 3.39 16 5 O -0.37 -5.75 9.10 -64.71 -0.59 -6.34 16 6 C 0.08 1.05 5.90 37.29 0.22 1.27 16 7 C -0.19 -2.35 3.06 -91.51 -0.28 -2.63 16 8 C 0.52 9.67 6.63 -10.99 -0.07 9.60 16 9 O -0.49 -11.73 12.90 -8.67 -0.11 -11.84 16 10 N -0.67 -12.30 5.16 -9.90 -0.05 -12.35 16 11 C 0.14 3.19 6.28 -83.74 -0.53 2.66 16 12 C -0.24 -5.31 9.97 -39.11 -0.39 -5.70 16 13 C -0.11 -2.53 10.00 -39.62 -0.40 -2.92 16 14 C -0.04 -1.15 7.31 -38.62 -0.28 -1.43 16 15 F -0.16 -4.33 16.71 2.25 0.04 -4.30 16 16 C 0.09 2.65 5.58 -106.78 -0.60 2.05 16 17 C -0.45 -12.64 8.79 -37.79 -0.33 -12.97 16 18 H 0.08 2.30 7.72 -52.48 -0.41 1.90 16 19 C 0.08 2.02 5.19 -17.34 -0.09 1.93 16 20 N -0.78 -20.93 10.83 55.55 0.60 -20.33 16 21 Si 0.91 19.79 29.59 -169.99 -5.03 14.76 16 22 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.14 -3.72 7.32 -38.71 -0.28 -4.00 16 26 C 0.07 0.76 6.31 37.29 0.24 1.00 16 27 O -0.38 -5.43 9.62 -59.03 -0.57 -6.00 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 1.51 7.95 -51.93 -0.41 1.10 16 38 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.39 5.54 8.39 -40.82 -0.34 5.19 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 42 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 43 H 0.15 4.38 4.28 -52.49 -0.22 4.16 16 44 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -33.66 370.30 -8.78 -42.43 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.36 Total: 9.67 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.29 Total: -11.28 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.55 Total: -32.68 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.27 Total: -24.18 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.04 Total: -4.30 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.66 -8.78 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183178700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.887 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds