Wall clock time and date at job start Tue Mar 31 2020 19:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86801 * 119.99641 * 2 1 4 4 H 1.48494 * 109.46944 * 269.99778 * 3 2 1 5 5 H 1.48497 * 109.47365 * 30.00453 * 3 2 1 6 6 H 1.48507 * 109.46869 * 150.00103 * 3 2 1 7 7 C 1.38947 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00414 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00414 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99894 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47066 * 179.97438 * 12 10 9 14 14 C 1.47951 * 111.00180 * 169.99951 * 13 12 10 15 15 C 1.53933 * 86.18409 * 222.41840 * 14 13 12 16 16 O 1.42904 * 113.73255 * 269.26077 * 15 14 13 17 17 C 1.53000 * 113.73811 * 138.07883 * 15 14 13 18 18 N 1.46495 * 109.47145 * 185.00279 * 17 15 14 19 19 C 1.34777 * 119.99957 * 180.02562 * 18 17 15 20 20 O 1.21279 * 119.99760 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.00187 * 180.02562 * 19 18 17 22 22 N 1.46500 * 109.47322 * 180.02562 * 21 19 18 23 23 C 1.36890 * 126.39499 * 269.96980 * 22 21 19 24 24 C 1.34669 * 106.81617 * 180.02562 * 23 22 21 25 25 N 1.34134 * 108.02026 * 0.02562 * 24 23 22 26 26 C 1.30493 * 109.25480 * 0.02562 * 25 24 23 27 27 C 1.47964 * 110.99780 * 70.63659 * 13 12 10 28 28 H 0.96989 * 120.00006 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99968 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47232 * 59.99973 * 12 10 9 31 31 H 1.09000 * 109.47434 * 299.99453 * 12 10 9 32 32 H 1.09007 * 113.75814 * 108.09812 * 14 13 12 33 33 H 1.09001 * 113.75996 * 336.73958 * 14 13 12 34 34 H 0.96702 * 113.99878 * 178.09971 * 16 15 14 35 35 H 1.09000 * 109.46981 * 64.99971 * 17 15 14 36 36 H 1.09002 * 109.46856 * 305.00124 * 17 15 14 37 37 H 0.97001 * 120.00378 * 359.97438 * 18 17 15 38 38 H 1.09000 * 109.47381 * 59.99815 * 21 19 18 39 39 H 1.08994 * 109.47092 * 299.99945 * 21 19 18 40 40 H 1.07996 * 126.59258 * 0.08195 * 23 22 21 41 41 H 1.08002 * 125.99042 * 180.26007 * 24 23 22 42 42 H 1.08006 * 125.64571 * 179.97438 * 26 25 24 43 43 H 1.08996 * 113.75447 * 23.27460 * 27 13 12 44 44 H 1.08992 * 113.75968 * 251.90210 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5579 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.5091 -7.2666 0.2366 15 6 2.6857 -7.6055 1.1696 16 8 3.7628 -8.2794 0.5154 17 6 2.2619 -8.2842 2.4736 18 7 3.4324 -8.4556 3.3378 19 6 3.2982 -9.0358 4.5468 20 8 2.2084 -9.4156 4.9196 21 6 4.5021 -9.2116 5.4360 22 7 4.0966 -9.8627 6.6841 23 6 3.6819 -9.2373 7.8290 24 6 3.4089 -10.2051 8.7247 25 7 3.6509 -11.3892 8.1428 26 6 4.0639 -11.1918 6.9208 27 6 2.8912 -6.0855 1.3005 28 1 -0.4849 0.8400 0.0004 29 1 0.3535 -2.3907 -0.0016 30 1 0.6176 -4.9205 -0.8924 31 1 0.6169 -4.9209 0.8876 32 1 1.4505 -7.9041 -0.6457 33 1 0.5546 -7.1642 0.7529 34 1 4.5162 -8.4683 1.0914 35 1 1.8283 -9.2593 2.2515 36 1 1.5226 -7.6651 2.9819 37 1 4.3041 -8.1522 3.0395 38 1 4.9350 -8.2363 5.6586 39 1 5.2419 -9.8300 4.9278 40 1 3.5903 -8.1724 7.9839 41 1 3.0535 -10.0545 9.7334 42 1 4.3341 -11.9636 6.2153 43 1 2.3408 -5.6377 2.1279 44 1 3.9367 -5.7793 1.2683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325317421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:10 Heat of formation + Delta-G solvation = 0.349483 kcal Electronic energy + Delta-G solvation = -28272.403536 eV Core-core repulsion = 24035.113135 eV Total energy + Delta-G solvation = -4237.290401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38957 -40.87867 -39.77054 -38.01769 -36.01475 -34.75285 -34.38021 -33.95074 -31.37021 -30.63003 -29.79419 -28.82571 -26.94440 -26.27640 -24.92232 -22.78421 -21.78979 -21.65009 -21.02251 -20.13329 -19.32808 -18.59643 -17.91541 -17.87832 -16.84310 -16.45601 -16.15663 -15.88958 -15.62291 -15.38744 -14.94182 -14.77488 -14.59141 -14.23675 -14.20730 -13.98534 -13.76283 -13.66317 -13.50324 -13.28745 -13.18754 -12.80497 -12.38176 -12.15892 -11.97311 -11.56071 -11.39696 -11.10860 -10.95128 -10.75824 -10.44851 -10.28937 -10.28435 -10.10308 -9.87197 -9.69826 -9.56576 -8.78977 -8.76142 -8.32040 -8.03162 -6.47880 -3.89056 1.61034 1.94784 2.18719 2.69138 2.94589 3.12889 3.21978 3.27026 3.54454 3.80565 3.87092 3.94840 4.06360 4.14742 4.15450 4.37007 4.39070 4.42197 4.53080 4.75305 4.98397 5.13108 5.16246 5.17525 5.30128 5.32587 5.39789 5.50691 5.59575 5.68986 5.72600 5.73654 5.87809 6.01695 6.16589 6.42677 6.48177 6.69043 6.85687 7.02796 7.27999 7.48969 7.54448 7.78410 7.98707 8.54170 9.11245 9.46911 9.98151 10.69748 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.002043 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.274903 B =13700.214733 C =14873.035298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.007 3.993 13 N -0.440 5.440 14 C 0.018 3.982 15 C 0.087 3.913 16 O -0.520 6.520 17 C 0.102 3.898 18 N -0.724 5.724 19 C 0.496 3.504 20 O -0.516 6.516 21 C 0.087 3.913 22 N -0.448 5.448 23 C -0.046 4.046 24 C -0.029 4.029 25 N -0.494 5.494 26 C 0.192 3.808 27 C -0.001 4.001 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.370 0.630 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.401 0.599 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.203 0.797 43 H 0.074 0.926 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -18.844 9.732 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.125 4.125 13 N -0.162 5.162 14 C -0.112 4.112 15 C 0.045 3.955 16 O -0.324 6.324 17 C -0.022 4.022 18 N -0.378 5.378 19 C 0.280 3.720 20 O -0.390 6.390 21 C -0.041 4.041 22 N -0.131 5.131 23 C -0.178 4.178 24 C -0.176 4.176 25 N -0.212 5.212 26 C -0.091 4.091 27 C -0.130 4.130 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.217 0.783 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.236 0.764 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.191 0.809 41 H 0.187 0.813 42 H 0.219 0.781 43 H 0.092 0.908 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.360 -19.479 9.144 22.438 hybrid contribution -0.052 1.970 0.483 2.029 sum 6.308 -17.509 9.626 20.953 Atomic orbital electron populations 1.69609 1.05943 1.28247 1.50394 1.25279 0.95656 0.99775 0.97252 0.85848 0.79176 0.80745 0.78461 1.20333 1.20895 1.19448 1.19685 0.93338 0.82176 1.47744 0.87934 1.41873 1.09202 1.04602 1.64280 1.19633 0.88353 0.84461 0.84764 1.90518 1.13604 1.86981 1.55300 1.22517 0.95170 0.92712 1.02102 1.68476 1.18043 0.99642 1.30038 1.24129 0.94398 0.93456 0.99192 1.23073 0.90166 0.91597 0.90684 1.86667 1.27911 1.78694 1.39121 1.22093 0.88292 1.02215 0.89637 1.45815 1.12325 1.62175 1.17524 1.20759 0.90888 0.78278 0.82088 1.90826 1.27252 1.48073 1.72844 1.21676 0.95969 1.02113 0.84308 1.44992 1.50116 1.07672 1.10344 1.22723 1.08227 0.99941 0.86870 1.22281 1.06722 0.87932 1.00643 1.70292 1.17380 1.27485 1.06013 1.24966 1.04301 0.83863 0.95923 1.24527 1.03168 0.93005 0.92266 0.91805 0.77475 0.88854 0.92738 0.88033 0.89845 0.78257 0.90052 0.89905 0.76376 0.85669 0.85561 0.80929 0.81291 0.78073 0.90836 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.97 5.29 -10.97 -0.06 -14.03 16 10 C 0.44 10.17 7.59 -10.99 -0.08 10.09 16 11 O -0.58 -15.27 15.13 5.55 0.08 -15.19 16 12 C 0.01 0.12 5.31 -4.97 -0.03 0.09 16 13 N -0.44 -6.91 5.95 -239.64 -1.43 -8.33 16 14 C 0.02 0.20 7.38 -2.77 -0.02 0.18 16 15 C 0.09 0.87 1.52 -89.68 -0.14 0.73 16 16 O -0.52 -5.18 13.50 -35.23 -0.48 -5.66 16 17 C 0.10 0.84 5.28 -4.04 -0.02 0.82 16 18 N -0.72 -4.28 5.34 -60.30 -0.32 -4.60 16 19 C 0.50 3.77 7.90 -10.99 -0.09 3.68 16 20 O -0.52 -6.60 16.43 5.56 0.09 -6.51 16 21 C 0.09 0.36 6.63 -5.20 -0.03 0.33 16 22 N -0.45 -3.52 2.24 -119.87 -0.27 -3.79 16 23 C -0.05 -0.40 11.58 -16.56 -0.19 -0.59 16 24 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 25 N -0.49 -5.82 11.25 -14.66 -0.16 -5.98 16 26 C 0.19 1.75 12.56 -90.38 -1.14 0.61 16 27 C 0.00 -0.01 6.16 -2.76 -0.02 -0.02 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 34 H 0.37 2.01 7.61 45.56 0.35 2.35 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.40 1.20 7.31 -40.82 -0.30 0.90 16 38 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.20 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 44 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -39.10 380.40 -8.52 -47.62 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.20 Total: 10.94 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.21 Total: 7.55 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -1.51 Total: -60.16 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.30 Total: -27.35 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.10 -8.52 -47.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325317421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.970 kcal (2) G-P(sol) polarization free energy of solvation -39.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds