Wall clock time and date at job start Tue Mar 31 2020 20:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47726 * 2 1 4 4 N 1.35035 * 126.38747 * 265.00405 * 3 2 1 5 5 H 0.96992 * 124.88248 * 0.02562 * 4 3 2 6 6 N 1.28470 * 110.22992 * 179.72356 * 4 3 2 7 7 C 1.31810 * 110.07463 * 0.45334 * 6 4 3 8 8 C 1.47707 * 126.52257 * 179.82019 * 7 6 4 9 9 O 1.21569 * 120.00611 * 185.68931 * 8 7 6 10 10 N 1.34777 * 119.99718 * 5.69313 * 8 7 6 11 11 C 1.47077 * 120.88304 * 185.78635 * 10 8 7 12 12 C 1.53241 * 108.52205 * 128.83414 * 11 10 8 13 13 N 1.46896 * 109.33944 * 53.83265 * 12 11 10 14 14 C 1.46903 * 111.00176 * 172.74581 * 13 12 11 15 15 C 1.50693 * 109.46987 * 64.98682 * 14 13 12 16 16 H 1.08003 * 120.00219 * 354.98675 * 15 14 13 17 17 C 1.37877 * 119.99943 * 174.98765 * 15 14 13 18 18 N 1.31517 * 120.00282 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00288 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46948 * 59.99564 * 19 17 15 21 21 H 1.48493 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47021 * 300.00104 * 19 17 15 23 23 C 1.46904 * 111.26799 * 296.89385 * 13 12 11 24 24 C 1.47086 * 120.88142 * 5.80859 * 10 8 7 25 25 C 1.35372 * 126.38303 * 84.99687 * 3 2 1 26 26 N 1.47999 * 127.24947 * 0.03950 * 25 3 2 27 27 O 1.21805 * 120.00505 * 269.98019 * 26 25 3 28 28 O 1.21809 * 119.99895 * 89.97729 * 26 25 3 29 29 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46805 * 300.00257 * 1 2 3 31 31 H 1.09004 * 109.46833 * 59.99533 * 1 2 3 32 32 H 1.09003 * 109.46805 * 239.99743 * 2 1 3 33 33 H 1.09004 * 109.46833 * 120.00467 * 2 1 3 34 34 H 1.09001 * 109.62800 * 9.12671 * 11 10 8 35 35 H 1.09006 * 109.63147 * 248.54411 * 11 10 8 36 36 H 1.09001 * 109.49194 * 173.78878 * 12 11 10 37 37 H 1.08992 * 109.49622 * 293.87040 * 12 11 10 38 38 H 1.08997 * 109.47489 * 184.99050 * 14 13 12 39 39 H 1.09005 * 109.46769 * 304.98731 * 14 13 12 40 40 H 0.96993 * 120.00411 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.49183 * 183.06504 * 23 13 12 42 42 H 1.08994 * 109.49122 * 303.14177 * 23 13 12 43 43 H 1.08994 * 109.62899 * 111.45558 * 24 10 8 44 44 H 1.08996 * 109.62755 * 350.86810 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.3888 2.1444 -1.0829 5 1 2.3601 1.8242 -1.9980 6 7 2.7654 3.3200 -0.7273 7 6 2.6929 3.4412 0.5832 8 6 3.0423 4.6375 1.3761 9 8 3.0290 4.5870 2.5906 10 7 3.3760 5.7850 0.7529 11 6 3.8486 6.9493 1.5173 12 6 5.1590 7.4416 0.8938 13 7 4.9550 7.6818 -0.5410 14 6 6.1357 8.3167 -1.1417 15 6 7.3041 7.3672 -1.0769 16 1 7.2047 6.4228 -0.5625 17 6 8.5002 7.7041 -1.6744 18 7 8.6215 8.8544 -2.3003 19 14 9.9488 6.5275 -1.5935 20 1 9.5775 5.2405 -2.2346 21 1 11.1084 7.1202 -2.3070 22 1 10.3122 6.2866 -0.1739 23 6 4.6095 6.4398 -1.2454 24 6 3.2766 5.9065 -0.7095 25 6 2.2106 2.2094 1.0857 26 7 1.9556 1.8573 2.5004 27 8 0.8598 2.0625 2.9911 28 8 2.8415 1.3621 3.1739 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0222 6.6608 2.5540 35 1 3.1023 7.7427 1.4751 36 1 5.4663 8.3687 1.3776 37 1 5.9329 6.6862 1.0296 38 1 5.9256 8.5638 -2.1823 39 1 6.3768 9.2275 -0.5935 40 1 9.4628 9.0913 -2.7210 41 1 4.5183 6.6404 -2.3129 42 1 5.3910 5.6983 -1.0797 43 1 2.4753 6.5995 -0.9658 44 1 3.0720 4.9285 -1.1451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471237193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:08 Heat of formation + Delta-G solvation = 60.614666 kcal Electronic energy + Delta-G solvation = -30103.224899 eV Core-core repulsion = 25868.547792 eV Total energy + Delta-G solvation = -4234.677107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.88301 -41.84440 -39.91596 -37.62332 -36.50314 -35.34717 -34.53796 -33.09018 -32.36681 -31.12628 -30.25618 -28.35193 -26.87092 -25.77448 -24.57267 -24.32522 -23.09889 -22.17562 -21.78160 -20.55105 -19.36300 -18.85233 -18.80574 -17.96442 -17.23407 -16.95478 -16.62751 -16.35730 -15.95159 -15.09234 -15.04008 -14.86839 -14.61952 -14.41426 -13.99418 -13.75244 -13.54941 -13.28797 -12.91930 -12.66755 -12.38848 -11.93862 -11.89514 -11.70404 -11.64321 -11.33748 -11.19889 -11.11848 -11.09612 -10.87290 -10.66930 -10.64803 -10.40141 -10.38219 -10.14109 -10.04341 -9.90271 -9.66885 -8.58454 -8.50685 -7.31914 -6.10818 -4.20434 0.47526 0.76809 0.86368 1.05131 2.04429 2.78758 2.96571 3.22688 3.28270 3.31055 3.55377 3.70471 3.88191 4.32430 4.33852 4.40318 4.51835 4.69439 4.82872 4.96599 5.12983 5.19506 5.20019 5.35779 5.46130 5.52246 5.58325 5.73454 5.81338 5.89084 5.97700 6.18504 6.22370 6.37273 6.56499 6.61175 6.66164 6.93537 7.15346 7.35727 7.42766 7.56136 7.80633 7.90758 7.95749 8.13363 8.19143 8.89083 9.47009 10.94309 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.003102 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.862578 B = 9023.961573 C = 9487.530335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.072 4.072 3 C 0.100 3.900 4 N -0.364 5.364 5 H 0.460 0.540 6 N -0.222 5.222 7 C 0.062 3.938 8 C 0.587 3.413 9 O -0.528 6.528 10 N -0.581 5.581 11 C 0.116 3.884 12 C 0.049 3.951 13 N -0.542 5.542 14 C 0.188 3.812 15 C -0.553 4.553 16 H 0.055 0.945 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.055 3.945 24 C 0.077 3.923 25 C -0.105 4.105 26 N 0.060 4.940 27 O -0.129 6.129 28 O -0.125 6.125 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.958 -16.867 -0.311 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.031 4.031 4 N -0.077 5.077 5 H 0.308 0.692 6 N -0.056 5.056 7 C -0.101 4.101 8 C 0.371 3.629 9 O -0.404 6.404 10 N -0.312 5.312 11 C -0.006 4.006 12 C -0.080 4.080 13 N -0.266 5.266 14 C 0.063 3.937 15 C -0.592 4.592 16 H 0.073 0.927 17 C -0.136 4.136 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.074 4.074 24 C -0.046 4.046 25 C -0.198 4.198 26 N 0.593 4.407 27 O -0.353 6.353 28 O -0.350 6.350 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.783 -15.610 -1.527 22.971 hybrid contribution 1.559 -1.674 0.350 2.314 sum -15.224 -17.283 -1.177 23.062 Atomic orbital electron populations 1.21841 0.92275 1.03582 1.03495 1.20500 0.97869 0.86893 1.05771 1.20949 1.00049 0.96554 0.85535 1.43459 1.45935 1.08376 1.09970 0.69165 1.73761 1.18047 1.01231 1.12539 1.22002 1.03950 0.94700 0.89487 1.16833 0.78522 0.81278 0.86238 1.90868 1.53679 1.83531 1.12278 1.48005 1.62505 1.11601 1.09101 1.21999 0.96859 0.85957 0.95797 1.22268 0.94189 1.00825 0.90746 1.62516 1.39664 1.22970 1.01446 1.19760 0.84470 0.94067 0.95398 1.21690 0.97571 1.04393 1.35551 0.92720 1.24944 0.98624 0.95128 0.94901 1.69921 1.26158 1.21403 1.35290 0.86716 0.82151 0.81168 0.78357 1.20365 1.21082 1.20179 1.22170 0.94071 0.92621 0.98547 1.22942 0.99437 1.04193 0.78013 1.20413 1.18442 0.97188 0.83737 1.42079 1.00126 0.97886 1.00578 1.94551 1.11062 1.56131 1.73554 1.94582 1.38934 1.42438 1.59035 0.90486 0.91299 0.91845 0.88422 0.88374 0.89186 0.90601 0.89955 0.93923 0.94544 0.95230 0.92656 0.90246 0.93873 0.91047 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.90 37.16 0.37 -0.32 16 2 C -0.07 -0.35 6.49 -27.89 -0.18 -0.53 16 3 C 0.10 0.84 6.48 -82.21 -0.53 0.31 16 4 N -0.36 -2.62 6.83 33.50 0.23 -2.39 16 5 H 0.46 1.20 8.96 -190.45 -1.71 -0.50 16 6 N -0.22 -2.53 8.63 33.42 0.29 -2.24 16 7 C 0.06 0.90 6.89 -82.76 -0.57 0.33 16 8 C 0.59 10.21 7.70 -12.39 -0.10 10.12 16 9 O -0.53 -10.63 15.97 5.31 0.08 -10.55 16 10 N -0.58 -9.62 3.01 -173.62 -0.52 -10.15 16 11 C 0.12 1.91 6.58 -3.60 -0.02 1.89 16 12 C 0.05 0.94 5.24 -3.70 -0.02 0.92 16 13 N -0.54 -11.10 4.83 -235.77 -1.14 -12.24 16 14 C 0.19 4.67 5.11 -4.98 -0.03 4.64 16 15 C -0.55 -14.84 7.75 -34.44 -0.27 -15.11 16 16 H 0.05 1.48 5.88 -52.48 -0.31 1.17 16 17 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.06 1.02 5.15 -3.70 -0.02 1.00 16 24 C 0.08 1.17 6.51 -3.60 -0.02 1.15 16 25 C -0.10 -1.38 6.75 -79.74 -0.54 -1.92 16 26 N 0.06 0.91 3.95 34.07 0.13 1.04 16 27 O -0.13 -2.00 19.26 -29.46 -0.57 -2.57 16 28 O -0.13 -2.03 19.26 -29.46 -0.57 -2.60 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.49 7.10 -51.93 -0.37 1.12 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 37 H 0.04 0.91 6.92 -51.93 -0.36 0.55 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 42 H 0.04 0.89 6.79 -51.93 -0.35 0.54 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.12 1.64 3.79 -105.29 -0.40 1.25 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -34.29 369.00 -10.08 -44.37 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -7.27 Total: -3.79 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.02 Total: 4.23 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.27 Total: -50.86 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -1.05 Total: -15.71 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.29 -10.08 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471237193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.986 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds