Wall clock time and date at job start Tue Mar 31 2020 19:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38240 * 120.00108 * 2 1 4 4 C 1.38234 * 120.00184 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99700 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99739 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46925 * 90.00169 * 6 5 4 8 8 S 1.81399 * 109.47162 * 179.97438 * 7 6 5 9 9 O 1.42096 * 110.54122 * 291.62427 * 8 7 6 10 10 O 1.42097 * 110.54031 * 68.37597 * 8 7 6 11 11 N 1.65601 * 104.44938 * 180.02562 * 8 7 6 12 12 C 1.46925 * 120.63327 * 89.99777 * 11 8 7 13 13 C 1.53191 * 108.77964 * 233.58677 * 12 11 8 14 14 C 1.53037 * 109.31064 * 305.36757 * 13 12 11 15 15 C 1.53034 * 109.54253 * 61.36476 * 14 13 12 16 16 H 1.09004 * 109.49894 * 58.58253 * 15 14 13 17 17 C 1.50702 * 109.50275 * 178.65388 * 15 14 13 18 18 H 1.07992 * 120.00554 * 119.99330 * 17 15 14 19 19 C 1.37884 * 119.99524 * 300.00061 * 17 15 14 20 20 N 1.31511 * 120.00017 * 179.97438 * 19 17 15 21 21 Si 1.86806 * 120.00023 * 359.97438 * 19 17 15 22 22 H 1.48500 * 109.46935 * 90.00291 * 21 19 17 23 23 H 1.48500 * 109.46848 * 210.00541 * 21 19 17 24 24 H 1.48504 * 109.47087 * 330.00245 * 21 19 17 25 25 C 1.46931 * 120.62964 * 269.72039 * 11 8 7 26 26 C 1.38233 * 120.00237 * 0.25842 * 5 4 3 27 27 C 1.38232 * 120.00093 * 359.49265 * 26 5 4 28 28 H 1.08999 * 109.47422 * 90.00706 * 1 2 3 29 29 H 1.09005 * 109.46957 * 210.00413 * 1 2 3 30 30 H 1.09004 * 109.47445 * 330.00213 * 1 2 3 31 31 H 1.08002 * 119.99418 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.99650 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47318 * 330.00935 * 6 5 4 34 34 H 1.08996 * 109.47240 * 209.99819 * 6 5 4 35 35 H 1.09004 * 109.46930 * 60.00099 * 7 6 5 36 36 H 1.09004 * 109.47059 * 300.00497 * 7 6 5 37 37 H 1.09004 * 109.58433 * 353.37553 * 12 11 8 38 38 H 1.09004 * 109.58573 * 113.65633 * 12 11 8 39 39 H 1.08997 * 109.49501 * 65.31281 * 13 12 11 40 40 H 1.08995 * 109.49696 * 185.38203 * 13 12 11 41 41 H 1.09004 * 109.45967 * 181.38477 * 14 13 12 42 42 H 1.09002 * 109.45826 * 301.35566 * 14 13 12 43 43 H 0.97002 * 119.99867 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.58704 * 246.20236 * 25 11 8 45 45 H 1.08998 * 109.58415 * 6.62716 * 25 11 8 46 46 H 1.08006 * 119.99920 * 179.72187 * 26 5 4 47 47 H 1.08002 * 120.00251 * 180.23294 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 6.2898 0.0007 1.4404 8 16 8.1038 -0.0001 1.4391 9 8 8.6015 -1.2376 0.9491 10 8 8.6025 1.2364 0.9477 11 7 8.5182 -0.0001 3.0424 12 6 8.7049 -1.2643 3.7674 13 6 7.8231 -1.2494 5.0200 14 6 8.1371 0.0007 5.8451 15 6 7.8246 1.2508 5.0196 16 1 6.7750 1.2396 4.7254 17 6 8.1028 2.4809 5.8444 18 1 8.8332 3.2022 5.5090 19 6 7.4248 2.6854 7.0275 20 7 7.6678 3.7587 7.7476 21 14 6.1609 1.4380 7.6074 22 1 6.8268 0.4159 8.4542 23 1 5.1108 2.1285 8.3984 24 1 5.5406 0.7782 6.4305 25 6 8.7120 1.2642 3.7655 26 6 3.5805 -1.1971 -0.0054 27 6 2.1982 -1.1972 0.0003 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6581 2.1325 -0.0004 32 1 4.1204 2.1325 -0.0010 33 1 6.1417 0.8899 -0.5161 34 1 6.1416 -0.8901 -0.5154 35 1 5.9268 -0.8892 1.9549 36 1 5.9267 0.8908 1.9542 37 1 8.4168 -2.0984 3.1276 38 1 9.7509 -1.3692 4.0556 39 1 6.7737 -1.2370 4.7259 40 1 8.0234 -2.1394 5.6165 41 1 7.5285 0.0012 6.7494 42 1 9.1925 0.0002 6.1177 43 1 7.1906 3.9027 8.5797 44 1 9.7579 1.3625 4.0557 45 1 8.4285 2.0989 3.1244 46 1 4.1205 -2.1324 -0.0099 47 1 1.6582 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645928310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:32 Heat of formation + Delta-G solvation = -60.438986 kcal Electronic energy + Delta-G solvation = -27526.509384 eV Core-core repulsion = 23800.583460 eV Total energy + Delta-G solvation = -3725.925924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.68090 -38.06259 -37.00202 -35.80383 -35.08699 -33.32887 -31.60811 -31.47044 -31.11089 -30.57781 -27.16124 -25.19670 -24.25888 -23.50602 -22.92163 -21.61491 -20.85087 -19.61560 -18.54226 -17.62998 -16.71737 -16.49314 -16.20696 -16.03106 -15.59769 -15.24041 -14.86869 -14.37979 -14.05903 -13.95377 -13.71649 -13.57912 -13.34876 -13.25063 -13.16534 -13.04732 -12.83693 -12.57901 -12.52161 -11.99908 -11.92971 -11.91179 -11.69091 -11.60651 -11.52613 -11.24287 -11.17407 -11.07950 -10.75704 -10.57901 -10.29983 -10.17619 -9.90230 -9.43974 -9.10532 -9.08158 -8.71091 -8.61689 -8.40177 -6.14165 -4.14589 0.37926 1.12515 1.22374 2.82093 3.20412 3.30800 3.33558 3.50858 3.96036 4.24183 4.33626 4.49006 4.53584 4.63426 4.73653 4.76570 4.83389 5.00354 5.07090 5.17908 5.22907 5.28775 5.32288 5.34985 5.36471 5.51624 5.55764 5.56447 5.70579 5.75797 5.89063 5.90846 5.94452 6.00397 6.10765 6.21784 6.34025 6.36920 6.39925 6.42196 6.47787 6.68401 6.76347 6.82133 6.92196 7.05886 7.40219 7.68908 8.42536 8.89757 9.47378 10.98737 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.003936 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.258813 B = 7112.593611 C = 8772.503853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.110 4.110 5 C -0.079 4.079 6 C -0.070 4.070 7 C -0.630 4.630 8 S 2.607 3.393 9 O -0.964 6.964 10 O -0.953 6.953 11 N -0.997 5.997 12 C 0.127 3.873 13 C -0.140 4.140 14 C -0.120 4.120 15 C 0.003 3.997 16 H 0.029 0.971 17 C -0.517 4.517 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.266 1.266 25 C 0.136 3.864 26 C -0.113 4.113 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.264 0.736 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.123 0.877 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 -11.121 -14.933 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.128 4.128 5 C -0.080 4.080 6 C -0.109 4.109 7 C -0.758 4.758 8 S 2.701 3.299 9 O -0.954 6.954 10 O -0.944 6.944 11 N -0.835 5.835 12 C 0.002 3.998 13 C -0.179 4.179 14 C -0.158 4.158 15 C -0.017 4.017 16 H 0.047 0.953 17 C -0.555 4.555 18 H 0.096 0.904 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.226 1.226 24 H -0.191 1.191 25 C 0.012 3.988 26 C -0.131 4.131 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.420 -11.010 -15.497 21.216 hybrid contribution -1.415 -0.603 1.115 1.900 sum -10.834 -11.614 -14.382 21.426 Atomic orbital electron populations 1.20791 0.91257 1.02836 1.02207 1.19949 0.96100 0.93281 0.99861 1.21049 0.94120 0.97630 1.00745 1.21120 0.94286 0.97792 0.99563 1.19611 0.94424 0.93501 1.00453 1.20293 0.93274 1.04274 0.93064 1.30807 1.28246 1.12344 1.04432 1.05043 0.77393 0.74145 0.73342 1.93554 1.77498 1.45428 1.78953 1.93591 1.77170 1.44999 1.78590 1.57711 1.83473 1.13306 1.29043 1.21346 1.00575 0.84214 0.93686 1.22031 0.99514 0.99528 0.96843 1.21934 1.01488 0.94367 0.97979 1.19577 0.95446 0.94135 0.92549 0.95271 1.20945 1.24171 1.05071 1.05362 0.90435 1.24986 0.96418 0.95174 0.96382 1.69891 1.42198 1.26873 1.14566 0.86855 0.81345 0.81096 0.78941 1.20568 1.22593 1.19138 1.21700 1.01173 0.81773 0.94123 1.21055 0.94238 0.97584 1.00197 1.21008 0.94075 0.97541 1.01153 0.91252 0.91596 0.91495 0.85930 0.85591 0.89366 0.89582 0.85073 0.84408 0.90183 0.91050 0.92339 0.91793 0.93365 0.91819 0.92574 0.91136 0.89822 0.85883 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 5 C -0.08 -0.88 5.13 -104.62 -0.54 -1.41 16 6 C -0.07 -0.76 5.35 -27.88 -0.15 -0.91 16 7 C -0.63 -7.49 6.16 37.16 0.23 -7.26 16 8 S 2.61 38.59 5.41 -107.50 -0.58 38.01 16 9 O -0.96 -15.63 16.72 -57.54 -0.96 -16.59 16 10 O -0.95 -16.88 16.72 -57.54 -0.96 -17.85 16 11 N -1.00 -16.00 3.21 -113.27 -0.36 -16.37 16 12 C 0.13 1.84 6.31 -3.71 -0.02 1.81 16 13 C -0.14 -2.16 6.08 -26.61 -0.16 -2.32 16 14 C -0.12 -2.37 4.65 -26.69 -0.12 -2.50 16 15 C 0.00 0.07 1.85 -91.43 -0.17 -0.10 16 16 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 17 C -0.52 -13.72 9.15 -34.44 -0.32 -14.03 16 18 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 19 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 20 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 21 Si 0.89 21.14 24.39 -169.99 -4.15 17.00 16 22 H -0.28 -6.47 6.86 56.52 0.39 -6.08 16 23 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.27 -6.01 6.53 56.52 0.37 -5.65 16 25 C 0.14 2.57 5.57 -3.48 -0.02 2.55 16 26 C -0.11 -1.17 9.70 -39.59 -0.38 -1.55 16 27 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.13 1.38 8.14 -51.92 -0.42 0.96 16 36 H 0.14 1.66 8.14 -51.92 -0.42 1.23 16 37 H 0.08 1.00 7.10 -51.93 -0.37 0.63 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.03 3.25 -51.93 -0.17 0.86 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.08 1.57 7.09 -51.93 -0.37 1.21 16 46 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -33.05 381.97 -11.28 -44.33 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.63 Total: 2.11 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -3.16 Total: -30.52 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.41 Total: -42.25 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -1.92 Total: -34.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.15 Total: 17.00 kcal Atomic # 16 Polarization: 38.59 SS G_CDS: -0.58 Total: 38.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.05 -11.28 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645928310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.113 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds