Wall clock time and date at job start Tue Mar 31 2020 21:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46987 * 2 1 4 4 N 1.28604 * 124.61771 * 270.00041 * 3 2 1 5 5 C 1.31383 * 108.71340 * 179.71998 * 4 3 2 6 6 C 1.39672 * 105.89820 * 0.42530 * 5 4 3 7 7 C 1.50703 * 127.04604 * 179.83995 * 6 5 4 8 8 N 1.46497 * 109.47315 * 94.71067 * 7 6 5 9 9 C 1.34771 * 120.00081 * 179.97438 * 8 7 6 10 10 O 1.21350 * 120.00310 * 0.02562 * 9 8 7 11 11 C 1.49457 * 119.99756 * 179.97438 * 9 8 7 12 12 O 1.21343 * 120.00132 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99586 * 180.02562 * 11 9 8 14 14 C 1.47022 * 125.65343 * 0.04916 * 13 11 9 15 15 C 1.54321 * 107.27468 * 181.01841 * 14 13 11 16 16 C 1.55154 * 102.93960 * 22.19064 * 15 14 13 17 17 O 1.42911 * 111.03652 * 82.58716 * 16 15 14 18 18 C 1.50696 * 111.00615 * 206.42230 * 16 15 14 19 19 H 1.08005 * 119.99797 * 355.93860 * 18 16 15 20 20 C 1.37876 * 120.00125 * 175.66455 * 18 16 15 21 21 N 1.31511 * 120.00440 * 354.29359 * 20 18 16 22 22 Si 1.86806 * 119.99748 * 174.29374 * 20 18 16 23 23 H 1.48504 * 109.47060 * 94.98807 * 22 20 18 24 24 H 1.48508 * 109.46933 * 214.98114 * 22 20 18 25 25 H 1.48498 * 109.47428 * 334.98115 * 22 20 18 26 26 C 1.47423 * 125.64759 * 179.97438 * 13 11 9 27 27 N 1.28592 * 124.61825 * 90.00450 * 3 2 1 28 28 H 1.08996 * 109.46988 * 299.99965 * 1 2 3 29 29 H 1.08997 * 109.47073 * 60.00086 * 1 2 3 30 30 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46748 * 240.00366 * 2 1 3 32 32 H 1.09000 * 109.47474 * 120.00229 * 2 1 3 33 33 H 1.07994 * 127.04511 * 180.27074 * 5 4 3 34 34 H 1.09002 * 109.47105 * 334.70818 * 7 6 5 35 35 H 1.09004 * 109.47194 * 214.71484 * 7 6 5 36 36 H 0.96994 * 119.99822 * 0.02562 * 8 7 6 37 37 H 1.09003 * 109.88214 * 300.43925 * 14 13 11 38 38 H 1.09005 * 109.88384 * 61.60053 * 14 13 11 39 39 H 1.08993 * 110.72093 * 263.82934 * 15 14 13 40 40 H 1.08999 * 110.71949 * 140.55656 * 15 14 13 41 41 H 0.96701 * 113.99927 * 183.20333 * 17 16 15 42 42 H 0.96998 * 120.00393 * 179.97438 * 21 20 18 43 43 H 1.09006 * 110.36548 * 37.07256 * 26 13 11 44 44 H 1.08999 * 110.37188 * 274.75730 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2618 2.0701 -1.0584 5 6 2.6772 3.2634 -0.6983 6 6 2.6830 3.2612 0.6984 7 6 3.0839 4.3952 1.6064 8 7 1.8924 5.1526 1.9972 9 6 2.0092 6.2188 2.8132 10 8 3.1015 6.5518 3.2239 11 6 0.7936 6.9918 3.2114 12 8 -0.2986 6.6592 2.8003 13 7 0.9106 8.0584 4.0270 14 6 2.1668 8.5695 4.5946 15 6 1.8096 9.7808 5.4816 16 6 0.3138 9.5383 5.8147 17 8 0.1726 8.6288 6.9079 18 6 -0.3932 10.8377 6.1023 19 1 0.1643 11.7626 6.1233 20 6 -1.7524 10.8467 6.3329 21 7 -2.4507 9.7413 6.1920 22 14 -2.6023 12.4293 6.8457 23 1 -3.1595 13.1033 5.6455 24 1 -3.7024 12.1159 7.7928 25 1 -1.6208 13.3266 7.5066 26 6 -0.1999 8.9068 4.4965 27 7 2.2619 2.0700 1.0583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.9591 4.0779 -1.3490 34 1 3.7768 5.0531 1.0818 35 1 3.5677 3.9939 2.4970 36 1 1.0193 4.8863 1.6692 37 1 2.6429 7.7962 5.1974 38 1 2.8360 8.8818 3.7927 39 1 1.9358 10.7127 4.9307 40 1 2.4115 9.7841 6.3903 41 1 -0.7448 8.4088 7.1206 42 1 -3.4070 9.7475 6.3546 43 1 -1.0861 8.3011 4.6861 44 1 -0.4199 9.6835 3.7641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335033513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:20 Heat of formation + Delta-G solvation = 0.020756 kcal Electronic energy + Delta-G solvation = -28848.378518 eV Core-core repulsion = 24611.073863 eV Total energy + Delta-G solvation = -4237.304656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.92937 -40.29675 -38.47670 -37.15735 -35.92502 -34.75492 -34.09152 -32.71462 -32.24737 -30.95793 -30.20864 -28.02407 -27.62588 -25.68748 -24.56762 -23.59491 -22.42373 -21.70778 -21.12584 -19.82797 -19.48663 -17.81902 -17.35782 -17.12900 -16.95597 -16.40629 -15.79762 -15.53083 -15.26467 -15.16085 -14.73921 -14.57817 -14.44950 -14.22578 -13.68161 -13.38622 -13.10024 -13.04418 -12.89491 -12.73564 -12.61747 -12.26042 -11.90699 -11.71509 -11.69000 -11.51906 -11.12885 -11.11480 -11.04491 -10.76028 -10.63362 -10.54797 -10.49310 -10.20826 -9.72134 -9.35254 -9.26252 -9.08972 -8.72526 -8.40545 -7.87561 -6.29877 -4.39384 1.40476 1.81535 1.88934 1.92511 2.84196 3.19728 3.28102 3.31899 3.61554 3.67365 3.97636 4.25896 4.26098 4.34029 4.49080 4.60174 4.71281 4.81165 4.97182 5.04734 5.13373 5.23894 5.40256 5.50894 5.54414 5.74557 5.79886 5.80465 5.86067 6.07562 6.14692 6.33265 6.34971 6.54131 6.75127 6.82549 6.87369 7.18595 7.24525 7.32633 7.72240 7.86892 7.97229 8.00192 8.07176 8.47128 8.64810 9.28411 9.34163 10.76626 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002212 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.327364 B =12657.679654 C =13360.083641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.135 3.865 3 N -0.151 5.151 4 N -0.290 5.290 5 C -0.006 4.006 6 C -0.021 4.021 7 C 0.213 3.787 8 N -0.704 5.704 9 C 0.514 3.486 10 O -0.515 6.515 11 C 0.508 3.492 12 O -0.538 6.538 13 N -0.574 5.574 14 C 0.111 3.889 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.581 6.581 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.892 5.892 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.093 3.907 27 N -0.265 5.265 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.201 0.799 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.413 0.587 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.380 0.620 42 H 0.270 0.730 43 H 0.091 0.909 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -16.099 -12.734 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 N -0.053 5.053 4 N -0.130 5.130 5 C -0.189 4.189 6 C -0.184 4.184 7 C 0.088 3.912 8 N -0.359 5.359 9 C 0.295 3.705 10 O -0.390 6.390 11 C 0.290 3.710 12 O -0.417 6.417 13 N -0.306 5.306 14 C -0.012 4.012 15 C -0.159 4.159 16 C 0.207 3.793 17 O -0.389 6.389 18 C -0.575 4.575 19 H 0.087 0.913 20 C -0.133 4.133 21 N -0.531 5.531 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.028 4.028 27 N -0.109 5.109 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.217 0.783 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.249 0.751 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.230 0.770 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.003 -17.460 -12.692 23.388 hybrid contribution -1.302 1.404 -0.057 1.915 sum 7.701 -16.057 -12.750 21.902 Atomic orbital electron populations 1.22197 0.92876 1.04037 1.03971 1.22034 0.96249 0.74268 1.05829 1.48231 1.44391 1.13475 0.99203 1.74090 1.17270 1.05539 1.16081 1.24733 1.04026 0.95724 0.94462 1.23049 1.06909 0.94153 0.94274 1.19398 0.87288 0.87698 0.96784 1.45722 1.11379 1.29479 1.49355 1.20407 0.89955 0.81087 0.79065 1.90735 1.27840 1.67362 1.53065 1.19504 0.88586 0.81707 0.81167 1.90728 1.27541 1.68042 1.55381 1.48677 1.11974 1.26445 1.43490 1.22151 0.85277 0.96914 0.96814 1.22710 0.98233 0.96260 0.98730 1.19641 0.89705 0.87674 0.82283 1.86133 1.32874 1.66809 1.53049 1.21470 0.93086 0.93202 1.49783 0.91339 1.25095 0.97337 0.97087 0.93779 1.69754 1.08176 1.27140 1.48002 0.86387 0.79098 0.82837 0.78575 1.20534 1.20939 1.19600 1.23518 0.88986 0.92519 0.97774 1.74051 1.15744 1.05217 1.15852 0.91134 0.91333 0.89472 0.87319 0.87270 0.78259 0.88587 0.89286 0.75103 0.91135 0.91681 0.90345 0.90522 0.77022 0.91994 0.89051 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.14 0.77 7.26 -4.04 -0.03 0.74 16 3 N -0.15 -1.48 3.95 -10.61 -0.04 -1.52 16 4 N -0.29 -3.02 12.05 30.67 0.37 -2.65 16 5 C -0.01 -0.06 12.16 -17.21 -0.21 -0.27 16 6 C -0.02 -0.22 6.72 -82.25 -0.55 -0.78 16 7 C 0.21 2.26 6.26 -5.19 -0.03 2.23 16 8 N -0.70 -9.39 5.54 -61.91 -0.34 -9.73 16 9 C 0.51 8.60 7.86 -11.58 -0.09 8.51 16 10 O -0.52 -9.10 14.12 5.50 0.08 -9.02 16 11 C 0.51 10.25 7.91 -11.58 -0.09 10.16 16 12 O -0.54 -11.91 16.73 5.50 0.09 -11.82 16 13 N -0.57 -12.17 3.33 -171.01 -0.57 -12.74 16 14 C 0.11 2.13 5.49 -3.07 -0.02 2.12 16 15 C -0.12 -2.46 6.13 -24.90 -0.15 -2.61 16 16 C 0.25 5.96 0.88 -89.62 -0.08 5.88 16 17 O -0.58 -14.71 13.17 -35.23 -0.46 -15.17 16 18 C -0.54 -13.77 8.25 -34.44 -0.28 -14.05 16 19 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 20 C 0.07 1.81 5.27 -17.82 -0.09 1.71 16 21 N -0.89 -23.43 10.70 55.43 0.59 -22.83 16 22 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.09 2.21 5.39 -2.52 -0.01 2.19 16 27 N -0.27 -3.03 12.05 33.71 0.41 -2.62 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 5.51 7.93 -40.82 -0.32 5.19 16 37 H 0.07 1.37 7.58 -51.93 -0.39 0.97 16 38 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 39 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.38 9.80 7.55 45.56 0.34 10.15 16 42 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.09 2.42 7.31 -51.93 -0.38 2.04 16 44 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -31.57 375.74 -5.84 -37.41 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.33 Total: 14.66 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: -1.27 Total: 15.30 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.42 Total: -52.09 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.29 Total: -36.01 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.57 -5.84 -37.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335033513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.431 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds