Wall clock time and date at job start Tue Mar 31 2020 21:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46987 * 2 1 4 4 N 1.28604 * 124.61771 * 270.00041 * 3 2 1 5 5 C 1.31383 * 108.71340 * 179.71998 * 4 3 2 6 6 C 1.39672 * 105.89820 * 0.42530 * 5 4 3 7 7 C 1.50703 * 127.04604 * 179.83995 * 6 5 4 8 8 N 1.46497 * 109.47315 * 94.71067 * 7 6 5 9 9 C 1.34771 * 120.00081 * 179.97438 * 8 7 6 10 10 O 1.21350 * 120.00310 * 0.02562 * 9 8 7 11 11 C 1.49457 * 119.99756 * 179.97438 * 9 8 7 12 12 O 1.21343 * 120.00132 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99586 * 180.02562 * 11 9 8 14 14 C 1.47022 * 125.65343 * 0.04916 * 13 11 9 15 15 C 1.54321 * 107.27468 * 181.01841 * 14 13 11 16 16 C 1.55154 * 102.93960 * 22.19064 * 15 14 13 17 17 O 1.42911 * 111.03652 * 82.58716 * 16 15 14 18 18 C 1.50696 * 111.00615 * 206.42230 * 16 15 14 19 19 H 1.08005 * 119.99797 * 355.93860 * 18 16 15 20 20 C 1.37876 * 120.00125 * 175.66455 * 18 16 15 21 21 N 1.31511 * 120.00440 * 354.29359 * 20 18 16 22 22 Si 1.86806 * 119.99748 * 174.29374 * 20 18 16 23 23 H 1.48504 * 109.47060 * 94.98807 * 22 20 18 24 24 H 1.48508 * 109.46933 * 214.98114 * 22 20 18 25 25 H 1.48498 * 109.47428 * 334.98115 * 22 20 18 26 26 C 1.47423 * 125.64759 * 179.97438 * 13 11 9 27 27 N 1.28592 * 124.61825 * 90.00450 * 3 2 1 28 28 H 1.08996 * 109.46988 * 299.99965 * 1 2 3 29 29 H 1.08997 * 109.47073 * 60.00086 * 1 2 3 30 30 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46748 * 240.00366 * 2 1 3 32 32 H 1.09000 * 109.47474 * 120.00229 * 2 1 3 33 33 H 1.07994 * 127.04511 * 180.27074 * 5 4 3 34 34 H 1.09002 * 109.47105 * 334.70818 * 7 6 5 35 35 H 1.09004 * 109.47194 * 214.71484 * 7 6 5 36 36 H 0.96994 * 119.99822 * 0.02562 * 8 7 6 37 37 H 1.09003 * 109.88214 * 300.43925 * 14 13 11 38 38 H 1.09005 * 109.88384 * 61.60053 * 14 13 11 39 39 H 1.08993 * 110.72093 * 263.82934 * 15 14 13 40 40 H 1.08999 * 110.71949 * 140.55656 * 15 14 13 41 41 H 0.96701 * 113.99927 * 183.20333 * 17 16 15 42 42 H 0.96998 * 120.00393 * 179.97438 * 21 20 18 43 43 H 1.09006 * 110.36548 * 37.07256 * 26 13 11 44 44 H 1.08999 * 110.37188 * 274.75730 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2618 2.0701 -1.0584 5 6 2.6772 3.2634 -0.6983 6 6 2.6830 3.2612 0.6984 7 6 3.0839 4.3952 1.6064 8 7 1.8924 5.1526 1.9972 9 6 2.0092 6.2188 2.8132 10 8 3.1015 6.5518 3.2239 11 6 0.7936 6.9918 3.2114 12 8 -0.2986 6.6592 2.8003 13 7 0.9106 8.0584 4.0270 14 6 2.1668 8.5695 4.5946 15 6 1.8096 9.7808 5.4816 16 6 0.3138 9.5383 5.8147 17 8 0.1726 8.6288 6.9079 18 6 -0.3932 10.8377 6.1023 19 1 0.1643 11.7626 6.1233 20 6 -1.7524 10.8467 6.3329 21 7 -2.4507 9.7413 6.1920 22 14 -2.6023 12.4293 6.8457 23 1 -3.1595 13.1033 5.6455 24 1 -3.7024 12.1159 7.7928 25 1 -1.6208 13.3266 7.5066 26 6 -0.1999 8.9068 4.4965 27 7 2.2619 2.0700 1.0583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.9591 4.0779 -1.3490 34 1 3.7768 5.0531 1.0818 35 1 3.5677 3.9939 2.4970 36 1 1.0193 4.8863 1.6692 37 1 2.6429 7.7962 5.1974 38 1 2.8360 8.8818 3.7927 39 1 1.9358 10.7127 4.9307 40 1 2.4115 9.7841 6.3903 41 1 -0.7448 8.4088 7.1206 42 1 -3.4070 9.7475 6.3546 43 1 -1.0861 8.3011 4.6861 44 1 -0.4199 9.6835 3.7641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335033513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:19 Heat of formation + Delta-G solvation = -25.692485 kcal Electronic energy + Delta-G solvation = -28849.493528 eV Core-core repulsion = 24611.073863 eV Total energy + Delta-G solvation = -4238.419666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.66303 -41.77798 -40.01760 -38.86362 -36.90417 -36.07747 -35.29862 -34.23054 -33.52597 -31.93415 -31.68019 -29.69938 -28.72625 -27.39031 -25.42605 -24.91908 -23.47229 -22.84874 -21.94306 -21.54399 -20.96403 -19.18997 -18.87591 -18.32065 -18.04796 -17.55699 -17.26671 -17.06511 -16.67220 -16.28268 -16.02552 -15.97217 -15.59291 -15.12841 -14.93301 -14.78243 -14.65700 -14.45944 -14.01845 -13.92942 -13.64888 -13.56190 -13.30126 -13.10007 -12.82475 -12.70004 -12.51108 -12.49587 -12.34591 -12.33144 -12.22666 -12.08880 -11.89082 -11.43743 -11.18022 -10.78621 -10.65343 -10.39028 -10.36531 -10.23350 -9.61616 -8.24386 -6.41078 0.35299 0.59869 1.05396 1.33741 1.43256 1.46620 1.56251 1.59334 2.13506 2.38815 2.59991 2.97962 3.01078 3.33681 3.58422 3.79022 3.90974 3.92620 4.07979 4.12075 4.18066 4.23176 4.36236 4.42470 4.55089 4.68774 4.69614 4.74478 4.77154 4.98019 5.00596 5.05053 5.09156 5.12239 5.12441 5.18618 5.37303 5.44996 5.68021 5.75599 5.94875 6.06098 6.38116 6.59517 6.68480 6.91960 7.23187 7.27237 7.33993 8.80632 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002212 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.327364 B =12657.679654 C =13360.083641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 N -0.150 5.150 4 N -0.305 5.305 5 C -0.005 4.005 6 C -0.032 4.032 7 C 0.216 3.784 8 N -0.687 5.687 9 C 0.524 3.476 10 O -0.523 6.523 11 C 0.501 3.499 12 O -0.564 6.564 13 N -0.582 5.582 14 C 0.118 3.882 15 C -0.115 4.115 16 C 0.232 3.768 17 O -0.587 6.587 18 C -0.554 4.554 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.914 5.914 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.266 1.266 26 C 0.106 3.894 27 N -0.288 5.288 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.228 0.772 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.374 0.626 42 H 0.270 0.730 43 H 0.057 0.943 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -16.349 -13.682 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.053 5.053 4 N -0.146 5.146 5 C -0.187 4.187 6 C -0.194 4.194 7 C 0.093 3.907 8 N -0.341 5.341 9 C 0.304 3.696 10 O -0.399 6.399 11 C 0.285 3.715 12 O -0.445 6.445 13 N -0.314 5.314 14 C -0.004 4.004 15 C -0.153 4.153 16 C 0.191 3.809 17 O -0.394 6.394 18 C -0.593 4.593 19 H 0.089 0.911 20 C -0.174 4.174 21 N -0.553 5.553 22 Si 0.790 3.210 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.016 4.016 27 N -0.132 5.132 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.245 0.755 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.249 0.751 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.222 0.778 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.444 -17.740 -13.663 24.707 hybrid contribution -1.768 1.363 0.187 2.241 sum 8.676 -16.376 -13.476 22.914 Atomic orbital electron populations 1.22162 0.92675 1.05324 1.02283 1.22448 0.96399 0.72912 1.07623 1.48661 1.43714 1.14329 0.98634 1.74086 1.17856 1.06131 1.16520 1.25217 1.03035 0.96092 0.94353 1.23036 1.07615 0.93947 0.94767 1.19570 0.86144 0.87891 0.97124 1.45700 1.12535 1.28198 1.47683 1.19634 0.88288 0.81725 0.79938 1.90734 1.27342 1.67927 1.53870 1.20226 0.89632 0.81366 0.80295 1.90705 1.29040 1.68598 1.56149 1.48718 1.11850 1.26806 1.44001 1.22193 0.84547 0.96342 0.97281 1.22726 0.95513 0.97490 0.99561 1.19878 0.92249 0.86985 0.81754 1.86127 1.32326 1.67224 1.53736 1.21764 0.93592 0.93916 1.49988 0.91091 1.25817 0.98010 0.99803 0.93752 1.69869 1.08243 1.28725 1.48473 0.85439 0.77982 0.79475 0.78095 1.20266 1.20960 1.19063 1.23083 0.88773 0.91988 0.97718 1.74006 1.16336 1.05952 1.16933 0.93176 0.92494 0.86728 0.85187 0.85869 0.75547 0.86189 0.89397 0.75052 0.91134 0.89315 0.88842 0.89600 0.77804 0.92090 0.92447 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 71.98 0.74 -0.85 16 2 C 0.12 1.23 7.26 86.38 0.63 1.85 16 3 N -0.15 -2.77 3.95 -187.50 -0.74 -3.51 16 4 N -0.31 -5.92 12.05 -56.87 -0.69 -6.60 16 5 C 0.00 -0.08 12.16 85.11 1.03 0.95 16 6 C -0.03 -0.62 6.72 42.98 0.29 -0.33 16 7 C 0.22 4.16 6.26 85.63 0.54 4.70 16 8 N -0.69 -17.40 5.54 -468.13 -2.59 -19.99 16 9 C 0.52 16.89 7.86 87.27 0.69 17.58 16 10 O -0.52 -17.41 14.12 -3.25 -0.05 -17.45 16 11 C 0.50 20.19 7.91 87.27 0.69 20.88 16 12 O -0.56 -25.41 16.73 -3.23 -0.05 -25.46 16 13 N -0.58 -24.63 3.33 -813.33 -2.71 -27.34 16 14 C 0.12 4.37 5.49 86.73 0.48 4.85 16 15 C -0.12 -4.52 6.13 31.78 0.19 -4.33 16 16 C 0.23 11.21 0.88 -10.14 -0.01 11.20 16 17 O -0.59 -30.16 13.17 -148.98 -1.96 -32.13 16 18 C -0.55 -28.44 8.25 25.60 0.21 -28.23 16 19 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 20 C 0.03 1.40 5.27 84.65 0.45 1.85 16 21 N -0.91 -48.99 10.70 21.45 0.23 -48.76 16 22 Si 0.96 41.18 29.54 68.60 2.03 43.21 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 C 0.11 5.18 5.39 86.86 0.47 5.65 16 27 N -0.29 -6.28 12.05 -47.25 -0.57 -6.85 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.23 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.41 10.68 7.93 -92.71 -0.74 9.95 16 37 H 0.07 2.62 7.58 -2.39 -0.02 2.61 16 38 H 0.09 2.88 7.70 -2.38 -0.02 2.86 16 39 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.37 19.89 7.55 -74.06 -0.56 19.33 16 42 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.06 3.16 7.31 -2.38 -0.02 3.14 16 44 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 Total: -1.00 -68.02 375.74 -0.95 -68.97 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.24 Total: 40.15 kcal Atomic # 6 Polarization: 29.38 SS G_CDS: 6.39 Total: 35.77 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -7.07 Total: -113.05 kcal Atomic # 8 Polarization: -72.98 SS G_CDS: -2.06 Total: -75.04 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -68.02 -0.95 -68.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335033513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.278 kcal (2) G-P(sol) polarization free energy of solvation -68.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds