Wall clock time and date at job start Tue Mar 31 2020 21:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46899 * 2 1 4 4 C 1.53003 * 109.46733 * 240.00011 * 2 1 3 5 5 N 1.46897 * 109.47245 * 65.00166 * 4 2 1 6 6 C 1.46900 * 111.00243 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47208 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00303 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00281 * 179.97438 * 7 6 5 10 10 C 1.37093 * 120.00422 * 180.02562 * 9 7 6 11 11 H 1.07997 * 119.99638 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00337 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00107 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46966 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47129 * 119.99964 * 14 12 10 17 17 H 1.48494 * 109.47260 * 240.00281 * 14 12 10 18 18 C 1.52998 * 109.47306 * 119.99941 * 2 1 3 19 19 N 1.46494 * 109.47420 * 295.00159 * 18 2 1 20 20 C 1.34774 * 120.00280 * 180.02562 * 19 18 2 21 21 O 1.21515 * 119.99695 * 359.97438 * 20 19 18 22 22 C 1.48148 * 120.00041 * 179.97438 * 20 19 18 23 23 C 1.39893 * 121.12503 * 359.72006 * 22 20 19 24 24 N 1.31767 * 119.79228 * 180.27610 * 23 22 20 25 25 N 1.28283 * 122.41504 * 359.97438 * 24 23 22 26 26 C 1.32272 * 122.43599 * 0.02562 * 25 24 23 27 27 O 1.35700 * 120.08084 * 180.02562 * 26 25 24 28 28 C 1.39234 * 119.84258 * 0.02562 * 26 25 24 29 29 H 1.09006 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46943 * 300.00084 * 1 2 3 31 31 H 1.08998 * 109.47090 * 59.99964 * 1 2 3 32 32 H 1.09006 * 109.46707 * 184.99899 * 4 2 1 33 33 H 1.08998 * 109.47147 * 304.99996 * 4 2 1 34 34 H 1.00903 * 110.99860 * 56.04228 * 5 4 2 35 35 H 1.08996 * 109.46932 * 299.99733 * 6 5 4 36 36 H 1.09008 * 109.46845 * 59.99786 * 6 5 4 37 37 H 0.97006 * 119.99252 * 0.02562 * 9 7 6 38 38 H 0.97000 * 120.00431 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.47414 * 174.99764 * 18 2 1 40 40 H 1.09001 * 109.46887 * 54.99936 * 18 2 1 41 41 H 0.97003 * 120.00204 * 359.97438 * 19 18 2 42 42 H 1.08002 * 120.10574 * 0.24461 * 23 22 20 43 43 H 0.96707 * 113.99744 * 269.97636 * 27 26 25 44 44 H 1.07996 * 121.12373 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6513 0.0374 -2.4457 6 6 2.1256 -0.6265 -3.6672 7 6 1.7085 0.1786 -4.8708 8 8 1.0786 1.2049 -4.7254 9 7 2.0364 -0.2410 -6.1090 10 6 1.6574 0.4917 -7.2039 11 1 1.0965 1.4054 -7.0744 12 6 1.9950 0.0587 -8.4803 13 7 2.6771 -1.0534 -8.6380 14 14 1.4780 1.0567 -9.9724 15 1 0.7251 2.2572 -9.5282 16 1 2.6849 1.4809 -10.7265 17 1 0.6136 0.2258 -10.8484 18 6 2.0400 -0.7212 1.2492 19 7 1.6525 0.0353 2.4424 20 6 1.9966 -0.4131 3.6659 21 8 2.6278 -1.4452 3.7793 22 6 1.6051 0.3523 4.8724 23 6 0.8834 1.5462 4.7688 24 7 0.5536 2.2086 5.8591 25 7 0.8698 1.8007 7.0335 26 6 1.5507 0.6853 7.2378 27 8 1.8591 0.2984 8.5014 28 6 1.9502 -0.0910 6.1533 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.9881 0.9873 -2.3966 35 1 3.2125 -0.7037 -3.6401 36 1 1.6919 -1.6246 -3.7301 37 1 2.5405 -1.0616 -6.2252 38 1 2.9124 -1.3559 -9.5291 39 1 3.1263 -0.7995 1.2056 40 1 1.6054 -1.7198 1.2951 41 1 1.1489 0.8594 2.3518 42 1 0.5978 1.9240 3.7982 43 1 2.7054 0.6395 8.8217 44 1 2.5072 -1.0052 6.2962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715235708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:36 Heat of formation + Delta-G solvation = -52.770069 kcal Electronic energy + Delta-G solvation = -27074.734657 eV Core-core repulsion = 22835.140819 eV Total energy + Delta-G solvation = -4239.593838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98528 -40.16038 -38.44261 -38.24997 -37.38327 -35.17919 -34.10244 -33.85702 -32.55889 -31.92116 -31.22221 -27.64223 -27.41692 -25.74805 -25.16249 -24.65499 -23.13791 -21.60528 -20.85565 -19.70425 -19.21079 -18.78036 -18.01570 -17.87817 -16.99227 -16.56432 -16.42159 -16.04391 -15.87715 -15.56438 -15.03383 -14.80188 -14.53453 -14.36137 -14.28998 -14.11060 -13.73355 -13.52297 -13.32618 -12.89910 -12.74081 -12.47892 -12.06065 -12.03461 -11.74566 -11.55385 -11.26172 -11.23811 -11.07355 -11.03103 -10.96712 -10.93396 -10.47900 -10.36604 -10.25276 -10.11039 -9.66154 -9.54894 -8.51082 -8.11698 -7.99090 -6.44611 -3.85568 -0.41137 0.03906 2.05774 2.30335 2.64352 2.91434 3.14278 3.25154 3.32164 3.48420 3.63678 3.85168 3.87498 4.02068 4.10710 4.21798 4.29077 4.57037 4.63852 4.78717 4.85711 5.05053 5.10549 5.19378 5.20451 5.22191 5.32697 5.41995 5.57866 5.64170 5.73632 5.78352 5.79792 5.93437 6.05314 6.22619 6.30182 6.60627 6.78138 7.12551 7.45937 7.52657 7.57883 7.90200 8.03468 8.57969 9.15030 9.51236 10.02305 10.73114 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.039560 B = 0.001424 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.620184 B =19659.176966 C =20183.360680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.123 3.877 19 N -0.713 5.713 20 C 0.561 3.439 21 O -0.521 6.521 22 C -0.113 4.113 23 C 0.060 3.940 24 N -0.210 5.210 25 N -0.242 5.242 26 C 0.259 3.741 27 O -0.469 6.469 28 C -0.075 4.075 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.349 0.651 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.403 0.597 42 H 0.181 0.819 43 H 0.410 0.590 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 0.047 28.481 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.097 0.903 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.122 0.878 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.001 4.001 19 N -0.365 5.365 20 C 0.345 3.655 21 O -0.397 6.397 22 C -0.128 4.128 23 C -0.106 4.106 24 N -0.054 5.054 25 N -0.095 5.095 26 C 0.073 3.927 27 O -0.275 6.275 28 C -0.106 4.106 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.168 0.832 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.239 0.761 42 H 0.198 0.802 43 H 0.269 0.731 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.010 0.575 29.118 29.124 hybrid contribution 1.993 -0.639 -1.458 2.551 sum 2.003 -0.064 27.660 27.732 Atomic orbital electron populations 1.21787 0.93544 1.02367 1.02250 1.21367 0.97770 1.00073 0.92815 0.90274 1.21888 0.97388 0.98007 0.89156 1.60041 1.64145 1.05845 0.99760 1.21667 0.97757 0.98678 0.90084 1.19799 0.85599 0.87946 0.84087 1.90520 1.44125 1.26432 1.85735 1.41875 1.49395 1.24276 1.04466 1.19757 1.32824 1.06743 0.83609 0.87847 1.25264 0.96888 0.96640 0.99126 1.69618 1.38905 1.21743 1.23998 0.85801 0.78283 0.79583 0.80684 1.19201 1.20775 1.20726 1.21543 1.00500 0.95555 0.82459 1.45893 1.57072 1.27929 1.05582 1.17831 0.80098 0.84838 0.82762 1.90835 1.39124 1.23390 1.86321 1.21266 0.99665 0.96737 0.95091 1.24634 0.93638 0.91496 1.00831 1.73119 1.14084 1.24767 0.93393 1.72841 1.08867 1.11768 1.15975 1.20802 0.94859 0.90947 0.86108 1.84827 1.44620 1.72825 1.25262 1.22819 0.96077 1.01063 0.90642 0.92623 0.93751 0.90155 0.95193 0.90633 0.83204 0.93848 0.89568 0.77460 0.91904 0.90812 0.90530 0.76086 0.80181 0.73106 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.95 37.16 0.33 -0.86 16 2 C -0.10 -0.79 2.57 -90.62 -0.23 -1.02 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.07 0.67 5.07 -3.82 -0.02 0.65 16 5 N -0.67 -9.52 5.58 -115.06 -0.64 -10.16 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.05 7.82 -10.99 -0.09 9.96 16 8 O -0.58 -15.36 15.78 5.55 0.09 -15.27 16 9 N -0.56 -13.98 5.29 -10.97 -0.06 -14.04 16 10 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 14 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.12 0.88 5.06 -4.05 -0.02 0.86 16 19 N -0.71 -4.36 5.24 -61.16 -0.32 -4.68 16 20 C 0.56 4.48 7.80 -12.19 -0.10 4.38 16 21 O -0.52 -5.96 16.49 5.35 0.09 -5.88 16 22 C -0.11 -0.76 5.92 -104.60 -0.62 -1.37 16 23 C 0.06 0.36 10.84 -16.96 -0.18 0.17 16 24 N -0.21 -1.83 11.48 30.79 0.35 -1.48 16 25 N -0.24 -2.24 11.50 30.49 0.35 -1.89 16 26 C 0.26 1.85 7.85 -16.99 -0.13 1.72 16 27 O -0.47 -2.51 13.57 -18.80 -0.26 -2.77 16 28 C -0.07 -0.49 9.72 -38.60 -0.38 -0.86 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.28 7.18 -51.93 -0.37 -0.09 16 31 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.35 5.15 8.43 -39.29 -0.33 4.82 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.40 1.50 5.81 -40.82 -0.24 1.27 16 42 H 0.18 0.46 6.53 -52.49 -0.34 0.12 16 43 H 0.41 0.01 9.06 45.56 0.41 0.42 16 44 H 0.17 0.93 7.79 -52.49 -0.41 0.52 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -35.69 382.86 -5.53 -41.21 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.90 Total: 10.38 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.70 Total: 6.55 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.41 Total: -55.74 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.08 Total: -23.91 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.69 -5.53 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715235708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.555 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds