Wall clock time and date at job start Tue Mar 31 2020 21:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46899 * 2 1 4 4 C 1.53003 * 109.46733 * 240.00011 * 2 1 3 5 5 N 1.46897 * 109.47245 * 65.00166 * 4 2 1 6 6 C 1.46900 * 111.00243 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47208 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00303 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00281 * 179.97438 * 7 6 5 10 10 C 1.37093 * 120.00422 * 180.02562 * 9 7 6 11 11 H 1.07997 * 119.99638 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99983 * 180.02562 * 10 9 7 13 13 N 1.31412 * 120.00337 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00107 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46966 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47129 * 119.99964 * 14 12 10 17 17 H 1.48494 * 109.47260 * 240.00281 * 14 12 10 18 18 C 1.52998 * 109.47306 * 119.99941 * 2 1 3 19 19 N 1.46494 * 109.47420 * 295.00159 * 18 2 1 20 20 C 1.34774 * 120.00280 * 180.02562 * 19 18 2 21 21 O 1.21515 * 119.99695 * 359.97438 * 20 19 18 22 22 C 1.48148 * 120.00041 * 179.97438 * 20 19 18 23 23 C 1.39893 * 121.12503 * 359.72006 * 22 20 19 24 24 N 1.31767 * 119.79228 * 180.27610 * 23 22 20 25 25 N 1.28283 * 122.41504 * 359.97438 * 24 23 22 26 26 C 1.32272 * 122.43599 * 0.02562 * 25 24 23 27 27 O 1.35700 * 120.08084 * 180.02562 * 26 25 24 28 28 C 1.39234 * 119.84258 * 0.02562 * 26 25 24 29 29 H 1.09006 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46943 * 300.00084 * 1 2 3 31 31 H 1.08998 * 109.47090 * 59.99964 * 1 2 3 32 32 H 1.09006 * 109.46707 * 184.99899 * 4 2 1 33 33 H 1.08998 * 109.47147 * 304.99996 * 4 2 1 34 34 H 1.00903 * 110.99860 * 56.04228 * 5 4 2 35 35 H 1.08996 * 109.46932 * 299.99733 * 6 5 4 36 36 H 1.09008 * 109.46845 * 59.99786 * 6 5 4 37 37 H 0.97006 * 119.99252 * 0.02562 * 9 7 6 38 38 H 0.97000 * 120.00431 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.47414 * 174.99764 * 18 2 1 40 40 H 1.09001 * 109.46887 * 54.99936 * 18 2 1 41 41 H 0.97003 * 120.00204 * 359.97438 * 19 18 2 42 42 H 1.08002 * 120.10574 * 0.24461 * 23 22 20 43 43 H 0.96707 * 113.99744 * 269.97636 * 27 26 25 44 44 H 1.07996 * 121.12373 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6513 0.0374 -2.4457 6 6 2.1256 -0.6265 -3.6672 7 6 1.7085 0.1786 -4.8708 8 8 1.0786 1.2049 -4.7254 9 7 2.0364 -0.2410 -6.1090 10 6 1.6574 0.4917 -7.2039 11 1 1.0965 1.4054 -7.0744 12 6 1.9950 0.0587 -8.4803 13 7 2.6771 -1.0534 -8.6380 14 14 1.4780 1.0567 -9.9724 15 1 0.7251 2.2572 -9.5282 16 1 2.6849 1.4809 -10.7265 17 1 0.6136 0.2258 -10.8484 18 6 2.0400 -0.7212 1.2492 19 7 1.6525 0.0353 2.4424 20 6 1.9966 -0.4131 3.6659 21 8 2.6278 -1.4452 3.7793 22 6 1.6051 0.3523 4.8724 23 6 0.8834 1.5462 4.7688 24 7 0.5536 2.2086 5.8591 25 7 0.8698 1.8007 7.0335 26 6 1.5507 0.6853 7.2378 27 8 1.8591 0.2984 8.5014 28 6 1.9502 -0.0910 6.1533 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.9881 0.9873 -2.3966 35 1 3.2125 -0.7037 -3.6401 36 1 1.6919 -1.6246 -3.7301 37 1 2.5405 -1.0616 -6.2252 38 1 2.9124 -1.3559 -9.5291 39 1 3.1263 -0.7995 1.2056 40 1 1.6054 -1.7198 1.2951 41 1 1.1489 0.8594 2.3518 42 1 0.5978 1.9240 3.7982 43 1 2.7054 0.6395 8.8217 44 1 2.5072 -1.0052 6.2962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715235708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:35 Heat of formation + Delta-G solvation = -85.976995 kcal Electronic energy + Delta-G solvation = -27076.174617 eV Core-core repulsion = 22835.140819 eV Total energy + Delta-G solvation = -4241.033798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.51669 -40.79057 -40.13984 -38.69266 -38.30327 -36.24893 -35.72075 -34.63670 -33.43694 -33.14185 -32.47901 -28.87677 -28.11043 -26.83092 -25.93235 -25.65860 -24.24992 -22.20344 -21.60532 -20.99949 -20.15413 -19.85845 -19.35469 -18.45466 -17.79797 -17.48923 -17.09496 -16.98518 -16.84199 -16.54922 -16.37129 -15.98292 -15.71776 -15.35156 -15.17848 -15.05265 -14.73971 -14.55843 -14.38141 -13.92532 -13.55525 -13.39870 -13.32120 -13.15572 -12.99269 -12.83838 -12.57863 -12.39539 -12.11042 -12.00427 -11.96977 -11.73141 -11.62159 -11.52484 -11.50000 -10.98418 -10.65972 -10.32383 -10.25296 -10.00130 -9.26380 -8.45951 -5.94523 -0.94949 -0.42094 1.37450 1.42979 1.48133 1.56854 1.73331 2.07204 2.18623 2.30125 2.38856 2.94219 3.02406 3.15344 3.21842 3.37790 3.54895 3.62639 3.86439 3.92584 3.98322 4.09012 4.33365 4.35704 4.50597 4.52402 4.59860 4.61050 4.65501 4.77940 4.79544 4.87363 4.98405 5.11019 5.15307 5.38198 5.42253 5.58225 5.90682 6.12397 6.25727 6.40756 6.46371 6.61299 6.90545 7.13972 7.38022 7.58079 8.13135 8.71614 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.039560 B = 0.001424 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.620184 B =19659.176966 C =20183.360680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.088 0.912 4 C 0.065 3.935 5 N -0.677 5.677 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.575 5.575 10 C -0.333 4.333 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.992 3.008 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.130 3.870 19 N -0.700 5.700 20 C 0.565 3.435 21 O -0.558 6.558 22 C -0.114 4.114 23 C 0.071 3.929 24 N -0.237 5.237 25 N -0.273 5.273 26 C 0.263 3.737 27 O -0.477 6.477 28 C -0.073 4.073 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.416 0.584 42 H 0.214 0.786 43 H 0.431 0.569 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -0.135 28.960 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.310 5.310 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.212 5.212 10 C -0.463 4.463 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.197 1.197 18 C 0.006 3.994 19 N -0.352 5.352 20 C 0.350 3.650 21 O -0.437 6.437 22 C -0.128 4.128 23 C -0.096 4.096 24 N -0.079 5.079 25 N -0.125 5.125 26 C 0.076 3.924 27 O -0.286 6.286 28 C -0.104 4.104 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.255 0.745 42 H 0.230 0.770 43 H 0.294 0.706 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.395 0.407 29.623 29.629 hybrid contribution 1.886 -0.605 -1.529 2.502 sum 2.281 -0.198 28.095 28.188 Atomic orbital electron populations 1.21751 0.93907 1.02047 1.02052 1.21230 0.97252 1.00354 0.91970 0.89338 1.21982 0.98332 0.97843 0.88259 1.60032 1.64696 1.05978 1.00263 1.21516 0.99082 0.98010 0.88122 1.20924 0.83817 0.87627 0.85096 1.90488 1.45505 1.28361 1.86514 1.41954 1.50034 1.24408 1.04812 1.19709 1.34283 1.06969 0.85333 0.90277 1.26019 0.96468 0.97556 1.01185 1.69675 1.39067 1.22492 1.24952 0.84882 0.78208 0.78012 0.77308 1.19739 1.19655 1.19725 1.21397 1.00394 0.95306 0.82290 1.45769 1.56472 1.28135 1.04811 1.17918 0.79447 0.84299 0.83297 1.90824 1.40999 1.25065 1.86819 1.21191 1.00064 0.96962 0.94620 1.25043 0.92380 0.90719 1.01422 1.73047 1.15250 1.25791 0.93845 1.72743 1.10055 1.12967 1.16720 1.20808 0.94394 0.90406 0.86784 1.84784 1.46288 1.72970 1.24564 1.22948 0.95709 1.01116 0.90585 0.93020 0.91412 0.92889 0.93881 0.90332 0.83638 0.91607 0.87977 0.77007 0.91350 0.90857 0.90975 0.74505 0.76994 0.70605 0.80466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.95 71.98 0.64 -1.45 16 2 C -0.09 -1.18 2.57 -10.79 -0.03 -1.21 16 3 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.07 1.18 5.07 86.30 0.44 1.62 16 5 N -0.68 -18.45 5.58 -517.93 -2.89 -21.34 16 6 C 0.07 2.06 6.17 85.56 0.53 2.59 16 7 C 0.44 20.07 7.82 87.66 0.69 20.75 16 8 O -0.62 -33.33 15.78 -3.06 -0.05 -33.38 16 9 N -0.57 -28.86 5.29 -306.99 -1.62 -30.48 16 10 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 11 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 14 Si 0.99 42.39 29.55 68.60 2.03 44.42 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 C 0.13 1.56 5.06 86.38 0.44 2.00 16 19 N -0.70 -6.79 5.24 -465.70 -2.44 -9.23 16 20 C 0.57 7.99 7.80 86.88 0.68 8.67 16 21 O -0.56 -12.10 16.49 -3.76 -0.06 -12.17 16 22 C -0.11 -1.33 5.92 -19.85 -0.12 -1.45 16 23 C 0.07 0.71 10.84 85.10 0.92 1.63 16 24 N -0.24 -3.89 11.48 -56.51 -0.65 -4.54 16 25 N -0.27 -4.90 11.50 -170.31 -1.96 -6.86 16 26 C 0.26 3.55 7.85 84.87 0.67 4.21 16 27 O -0.48 -4.63 13.57 -90.20 -1.22 -5.86 16 28 C -0.07 -0.86 9.72 22.90 0.22 -0.64 16 29 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.67 7.18 -2.38 -0.02 0.65 16 31 H 0.05 1.11 7.75 -2.39 -0.02 1.10 16 32 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.34 9.84 8.43 -89.69 -0.76 9.08 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 37 H 0.40 18.88 7.90 -92.70 -0.73 18.15 16 38 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.42 1.77 5.81 -92.71 -0.54 1.23 16 42 H 0.21 0.44 6.53 -2.91 -0.02 0.42 16 43 H 0.43 -0.47 9.06 -74.05 -0.67 -1.14 16 44 H 0.18 1.77 7.79 -2.91 -0.02 1.75 16 Total: -1.00 -78.15 382.86 -3.83 -81.98 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -1.60 Total: 27.61 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.36 Total: 18.67 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -9.28 Total: -121.27 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -1.33 Total: -51.40 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -78.15 -3.83 -81.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715235708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.999 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds