Wall clock time and date at job start Tue Mar 31 2020 21:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46643 * 2 1 4 4 C 1.52995 * 109.47477 * 239.99780 * 2 1 3 5 5 N 1.46894 * 109.47245 * 185.18124 * 4 2 1 6 6 C 1.46903 * 110.99889 * 163.93343 * 5 4 2 7 7 C 1.46895 * 111.00529 * 287.89514 * 5 4 2 8 8 C 1.50696 * 109.47582 * 169.99643 * 7 5 4 9 9 O 1.21298 * 119.99901 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00163 * 179.97438 * 8 7 5 11 11 C 1.37102 * 120.00039 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00034 * 359.97438 * 11 10 8 13 13 C 1.38949 * 119.99996 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00315 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99993 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47394 * 59.99579 * 15 13 11 17 17 H 1.48502 * 109.47182 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47347 * 299.99794 * 15 13 11 19 19 N 1.46497 * 109.46740 * 119.99716 * 2 1 3 20 20 C 1.34781 * 120.00231 * 274.60711 * 19 2 1 21 21 O 1.21594 * 119.99789 * 0.02562 * 20 19 2 22 22 C 1.47572 * 120.00148 * 180.02562 * 20 19 2 23 23 C 1.38046 * 119.72674 * 179.73006 * 22 20 19 24 24 N 1.34889 * 119.94681 * 179.74029 * 23 22 20 25 25 H 0.97001 * 120.30281 * 180.24188 * 24 23 22 26 26 C 1.34953 * 119.38157 * 0.52201 * 24 23 22 27 27 O 1.21856 * 120.26751 * 179.69956 * 26 24 23 28 28 C 1.41792 * 119.46049 * 359.72530 * 26 24 23 29 29 N 1.30602 * 120.03210 * 0.02562 * 28 26 24 30 30 H 1.08996 * 109.46905 * 60.00268 * 1 2 3 31 31 H 1.09000 * 109.46643 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47331 * 299.99852 * 1 2 3 33 33 H 1.08998 * 109.47335 * 305.18650 * 4 2 1 34 34 H 1.09000 * 109.46724 * 65.18164 * 4 2 1 35 35 H 1.09002 * 109.46541 * 54.90147 * 6 5 4 36 36 H 1.09005 * 109.46519 * 174.89730 * 6 5 4 37 37 H 1.08998 * 109.47558 * 294.89661 * 6 5 4 38 38 H 1.09003 * 109.46752 * 290.00118 * 7 5 4 39 39 H 1.09002 * 109.47288 * 49.99406 * 7 5 4 40 40 H 0.96996 * 119.99892 * 0.02562 * 10 8 7 41 41 H 0.96999 * 120.00475 * 179.97438 * 14 13 11 42 42 H 0.97003 * 120.00002 * 94.61087 * 19 2 1 43 43 H 1.07997 * 120.02756 * 359.97438 * 23 22 20 44 44 H 1.08005 * 119.97872 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5037 -0.8305 -1.1882 6 6 3.9977 -1.8270 -2.1479 7 6 4.1389 0.4751 -1.4111 8 6 5.6104 0.3775 -1.1010 9 8 6.0836 -0.6763 -0.7311 10 7 6.4008 1.4608 -1.2356 11 6 7.7396 1.3718 -0.9540 12 1 8.1608 0.4337 -0.6239 13 6 8.5544 2.4888 -1.0923 14 7 8.0419 3.6304 -1.4935 15 14 10.3784 2.3677 -0.7079 16 1 11.0050 1.3545 -1.5945 17 1 11.0206 3.6875 -0.9339 18 1 10.5599 1.9646 0.7098 19 7 2.0183 -0.6905 1.1962 20 6 2.1545 -0.0163 2.3552 21 8 1.8717 1.1652 2.4081 22 6 2.6469 -0.7118 3.5601 23 6 2.7895 -0.0143 4.7428 24 7 3.2342 -0.6468 5.8481 25 1 3.3330 -0.1626 6.6828 26 6 3.5457 -1.9582 5.7804 27 8 3.9540 -2.5443 6.7676 28 6 3.3944 -2.6483 4.5510 29 7 2.9573 -2.0153 3.4956 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6030 -1.7186 -1.2968 34 1 1.7546 -0.1566 -2.1367 35 1 3.6345 -1.5814 -3.1458 36 1 5.0877 -1.8233 -2.1467 37 1 3.6374 -2.8155 -1.8631 38 1 4.0057 0.7710 -2.4517 39 1 3.6791 1.2188 -0.7602 40 1 6.0225 2.3034 -1.5317 41 1 8.6106 4.4103 -1.5897 42 1 2.2436 -1.6331 1.1541 43 1 2.5417 1.0360 4.7841 44 1 3.6415 -3.6977 4.4873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754323704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:53 Heat of formation + Delta-G solvation = -81.962054 kcal Electronic energy + Delta-G solvation = -29353.064180 eV Core-core repulsion = 25112.204483 eV Total energy + Delta-G solvation = -4240.859697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.84264 -40.84509 -40.23024 -38.73504 -38.11247 -36.40661 -36.06238 -35.45939 -33.25822 -32.39478 -31.04829 -29.55189 -27.92070 -26.58820 -26.53777 -25.75297 -23.83397 -22.84382 -21.64006 -20.80424 -20.27129 -19.83141 -19.49552 -18.26604 -17.84329 -17.25792 -17.13856 -17.04355 -16.62208 -16.55156 -16.06236 -15.82151 -15.73073 -15.47162 -15.28604 -15.03595 -14.98128 -14.47226 -14.08873 -13.78560 -13.66730 -13.39653 -13.27655 -13.06260 -12.88861 -12.86658 -12.78380 -12.73499 -12.62463 -12.45016 -12.34728 -12.13554 -11.65183 -11.42152 -11.23806 -10.58115 -10.23573 -9.99692 -9.97049 -9.39931 -9.14454 -8.45300 -5.93754 -0.57919 0.07558 1.38728 1.40152 1.42514 1.51008 1.77092 2.08078 2.24290 2.29357 2.64714 2.81975 3.05609 3.12129 3.21593 3.41037 3.69291 3.85847 3.89553 4.17249 4.22792 4.24568 4.37840 4.45472 4.55073 4.62627 4.69903 4.77214 4.79186 4.85022 4.90675 5.11844 5.14733 5.24986 5.25750 5.36595 5.41248 5.62057 5.90998 6.10209 6.25864 6.32700 6.50438 6.62241 6.72436 7.14555 7.28398 7.58596 8.14727 8.72106 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008395 B = 0.003619 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.704881 B = 7735.861645 C = 9716.427439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.066 0.934 4 C 0.048 3.952 5 N -0.531 5.531 6 C 0.030 3.970 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.609 6.609 10 N -0.577 5.577 11 C -0.331 4.331 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.922 5.922 15 Si 0.990 3.010 16 H -0.271 1.271 17 H -0.270 1.270 18 H -0.274 1.274 19 N -0.681 5.681 20 C 0.585 3.415 21 O -0.579 6.579 22 C -0.100 4.100 23 C 0.198 3.802 24 N -0.569 5.569 25 H 0.441 0.559 26 C 0.478 3.522 27 O -0.557 6.557 28 C 0.035 3.965 29 N -0.376 5.376 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.394 0.606 41 H 0.277 0.723 42 H 0.415 0.585 43 H 0.216 0.784 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.110 -6.500 6.375 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.079 4.079 5 N -0.255 5.255 6 C -0.118 4.118 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.495 6.495 10 N -0.215 5.215 11 C -0.460 4.460 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.563 5.563 15 Si 0.814 3.186 16 H -0.196 1.196 17 H -0.195 1.195 18 H -0.200 1.200 19 N -0.330 5.330 20 C 0.371 3.629 21 O -0.460 6.460 22 C -0.224 4.224 23 C 0.061 3.939 24 N -0.202 5.202 25 H 0.284 0.716 26 C 0.274 3.726 27 O -0.435 6.435 28 C -0.155 4.155 29 N -0.091 5.091 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.227 0.773 41 H 0.086 0.914 42 H 0.251 0.749 43 H 0.232 0.768 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.695 -7.052 6.743 20.206 hybrid contribution 1.114 1.124 0.312 1.612 sum -16.581 -5.928 7.054 18.969 Atomic orbital electron populations 1.22057 0.92760 1.03253 1.02846 1.21117 0.94966 0.96478 0.83748 0.91604 1.22573 0.86260 1.02731 0.96378 1.61475 1.05513 1.05948 1.52575 1.22386 1.01088 0.95668 0.92615 1.21714 0.91235 0.93354 1.01004 1.20764 0.89372 0.84048 0.82789 1.90466 1.76784 1.30022 1.52238 1.41947 1.08052 1.11392 1.60089 1.19593 0.84663 0.97684 1.44096 0.90400 1.25997 1.04406 0.94176 0.96632 1.69670 1.38338 1.01240 1.47028 0.85034 0.77066 0.77778 0.78728 1.19591 1.19470 1.19951 1.45559 1.64509 1.14691 1.08255 1.17402 0.77027 0.85420 0.83079 1.90771 1.53924 1.15818 1.85528 1.20392 1.15444 0.91411 0.95106 1.23474 0.85338 1.00734 0.84392 1.43557 1.51124 1.11694 1.13829 0.71576 1.18885 0.79688 0.81969 0.92044 1.90986 1.47451 1.66285 1.38766 1.25004 1.01915 1.02810 0.85722 1.67643 1.02825 1.07764 1.30892 0.89790 0.90793 0.93221 0.87633 0.91287 0.94791 0.93148 0.89957 0.91497 0.88843 0.77290 0.91375 0.74850 0.76752 0.77219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.49 71.98 0.68 -1.73 16 2 C 0.14 3.08 2.52 44.99 0.11 3.19 16 3 H 0.07 1.77 6.22 -2.39 -0.01 1.75 16 4 C 0.05 0.96 4.53 86.30 0.39 1.35 16 5 N -0.53 -15.69 4.17 -927.08 -3.87 -19.56 16 6 C 0.03 0.87 9.19 127.69 1.17 2.05 16 7 C 0.06 2.02 5.30 85.56 0.45 2.48 16 8 C 0.44 21.22 7.42 87.66 0.65 21.87 16 9 O -0.61 -33.33 13.96 -3.09 -0.04 -33.37 16 10 N -0.58 -30.15 5.29 -306.99 -1.62 -31.78 16 11 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 12 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 13 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 14 N -0.92 -50.47 13.05 21.66 0.28 -50.19 16 15 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 N -0.68 -16.73 4.78 -445.66 -2.13 -18.86 16 20 C 0.58 15.96 7.76 86.71 0.67 16.63 16 21 O -0.58 -18.17 15.93 -4.01 -0.06 -18.24 16 22 C -0.10 -2.33 6.71 41.21 0.28 -2.06 16 23 C 0.20 3.29 10.77 84.18 0.91 4.20 16 24 N -0.57 -8.50 5.28 -316.87 -1.67 -10.18 16 25 H 0.44 3.82 8.92 -92.71 -0.83 2.99 16 26 C 0.48 10.20 7.74 85.09 0.66 10.86 16 27 O -0.56 -15.35 17.95 -4.85 -0.09 -15.44 16 28 C 0.04 0.73 11.23 85.75 0.96 1.69 16 29 N -0.38 -8.75 9.62 -183.47 -1.77 -10.51 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 1.63 7.99 -2.39 -0.02 1.61 16 34 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 35 H 0.03 0.83 8.13 -2.39 -0.02 0.81 16 36 H 0.05 1.94 5.79 -2.38 -0.01 1.92 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.06 8.12 -2.39 -0.02 2.05 16 39 H 0.09 3.15 6.50 -2.39 -0.02 3.14 16 40 H 0.39 19.77 7.90 -92.71 -0.73 19.04 16 41 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.41 9.90 7.92 -92.71 -0.73 9.17 16 43 H 0.22 2.48 7.58 -2.91 -0.02 2.45 16 44 H 0.21 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -78.77 377.97 -1.93 -80.70 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -1.21 Total: 39.74 kcal Atomic # 6 Polarization: 33.91 SS G_CDS: 8.22 Total: 42.14 kcal Atomic # 7 Polarization: -130.30 SS G_CDS: -10.78 Total: -141.08 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -0.19 Total: -67.05 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -78.77 -1.93 -80.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754323704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.263 kcal (2) G-P(sol) polarization free energy of solvation -78.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds