Wall clock time and date at job start Tue Mar 31 2020 21:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46971 * 2 1 4 4 C 1.53003 * 109.47147 * 120.00134 * 2 1 3 5 5 N 1.46901 * 109.47124 * 175.16185 * 4 2 1 6 6 C 1.46891 * 111.00012 * 198.92455 * 5 4 2 7 7 C 1.46906 * 110.99593 * 74.97362 * 5 4 2 8 8 C 1.50700 * 109.46742 * 189.99938 * 7 5 4 9 9 O 1.21291 * 120.00377 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99959 * 180.02562 * 8 7 5 11 11 C 1.37093 * 120.00066 * 180.02562 * 10 8 7 12 12 H 1.08007 * 120.00391 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00358 * 179.97438 * 11 10 8 14 14 N 1.31419 * 119.99658 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00340 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46621 * 90.00087 * 15 13 11 17 17 H 1.48499 * 109.47200 * 209.99675 * 15 13 11 18 18 H 1.48497 * 109.47364 * 330.00210 * 15 13 11 19 19 N 1.46498 * 109.46823 * 240.00137 * 2 1 3 20 20 C 1.34772 * 119.99888 * 82.99292 * 19 2 1 21 21 O 1.21592 * 120.00493 * 359.97438 * 20 19 2 22 22 C 1.47580 * 119.99941 * 179.97438 * 20 19 2 23 23 C 1.38046 * 119.72526 * 179.72552 * 22 20 19 24 24 N 1.34884 * 119.94577 * 179.74567 * 23 22 20 25 25 H 0.97003 * 120.30938 * 180.25230 * 24 23 22 26 26 C 1.34953 * 119.38321 * 0.52167 * 24 23 22 27 27 O 1.21861 * 120.27330 * 179.70058 * 26 24 23 28 28 C 1.41795 * 119.45831 * 359.72794 * 26 24 23 29 29 N 1.30597 * 120.03474 * 0.02562 * 28 26 24 30 30 H 1.09004 * 109.47447 * 300.00095 * 1 2 3 31 31 H 1.08999 * 109.47259 * 59.99235 * 1 2 3 32 32 H 1.09002 * 109.47490 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46834 * 295.16081 * 4 2 1 34 34 H 1.08994 * 109.47080 * 55.16216 * 4 2 1 35 35 H 1.09005 * 109.46868 * 54.12486 * 6 5 4 36 36 H 1.09003 * 109.47387 * 174.12030 * 6 5 4 37 37 H 1.08998 * 109.47815 * 294.12457 * 6 5 4 38 38 H 1.08995 * 109.47246 * 310.00138 * 7 5 4 39 39 H 1.08994 * 109.47103 * 70.00240 * 7 5 4 40 40 H 0.96999 * 119.99808 * 359.97438 * 10 8 7 41 41 H 0.96997 * 119.99787 * 180.02562 * 14 13 11 42 42 H 0.96995 * 119.99844 * 262.98615 * 19 2 1 43 43 H 1.07995 * 120.03003 * 0.02562 * 23 22 20 44 44 H 1.08001 * 119.97808 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5043 -0.8233 1.1923 6 6 3.9952 -1.8667 2.1023 7 6 4.1340 0.4709 1.4867 8 6 5.6077 0.3934 1.1817 9 8 6.0864 -0.6381 0.7600 10 7 6.3940 1.4705 1.3775 11 6 7.7346 1.4002 1.0995 12 1 8.1609 0.4816 0.7240 13 6 8.5451 2.5107 1.3008 14 7 8.0266 3.6284 1.7582 15 14 10.3719 2.4147 0.9227 16 1 10.6064 2.8093 -0.4897 17 1 11.1128 3.3344 1.8230 18 1 10.8487 1.0244 1.1339 19 7 2.0182 -0.6906 -1.1962 20 6 2.1086 -0.0287 -2.3667 21 8 1.7844 1.1415 -2.4301 22 6 2.6009 -0.7242 -3.5716 23 6 2.6858 -0.0423 -4.7689 24 7 3.1401 -0.6722 -5.8717 25 1 3.2053 -0.1972 -6.7149 26 6 3.4978 -1.9711 -5.7924 27 8 3.9052 -2.5575 -6.7799 28 6 3.3952 -2.6480 -4.5507 29 7 2.9570 -2.0154 -3.4956 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7491 -0.1599 2.1371 34 1 1.6076 -1.7208 1.2936 35 1 3.4878 -2.8066 1.8847 36 1 5.0690 -1.9932 1.9646 37 1 3.7929 -1.5747 3.1328 38 1 3.6760 1.2460 0.8723 39 1 3.9932 0.7121 2.5403 40 1 6.0111 2.2956 1.7144 41 1 8.5923 4.4037 1.8983 42 1 2.2766 -1.6241 -1.1457 43 1 2.3930 0.9958 -4.8216 44 1 3.6788 -3.6876 -4.4778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754323705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:58 Heat of formation + Delta-G solvation = -51.721689 kcal Electronic energy + Delta-G solvation = -29280.803209 eV Core-core repulsion = 25041.254832 eV Total energy + Delta-G solvation = -4239.548377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99950 -39.77796 -38.60886 -37.71894 -36.83291 -35.55544 -34.67525 -33.73774 -31.46265 -31.21451 -30.17148 -28.02478 -26.93440 -25.72844 -24.89592 -24.65712 -22.73920 -21.77209 -20.54159 -19.38045 -19.09681 -18.64789 -17.82033 -17.35729 -16.34715 -16.33234 -16.21093 -15.95523 -15.27861 -15.04930 -14.80084 -14.67486 -14.55829 -14.19464 -13.92653 -13.66451 -13.51989 -13.43376 -12.88184 -12.83085 -12.36468 -12.12272 -12.07805 -12.01819 -11.81395 -11.79473 -11.46957 -11.40236 -11.19333 -11.02471 -10.62109 -10.38184 -10.21430 -10.19748 -9.69235 -9.45244 -8.99081 -8.53831 -8.42748 -7.95766 -7.83901 -6.39420 -3.79977 0.19290 0.98636 2.18308 2.72302 3.16124 3.18806 3.27245 3.32984 3.55146 3.85395 3.92971 3.93977 4.01267 4.24690 4.44275 4.70685 4.73840 4.97336 5.09970 5.15764 5.22659 5.30509 5.42964 5.55434 5.59205 5.66686 5.69589 5.77191 5.83233 5.93101 5.97782 6.02383 6.04024 6.12094 6.31022 6.53863 6.60765 7.16431 7.25838 7.34820 7.37322 7.57188 7.69871 8.08813 8.28490 8.64707 9.20771 9.57511 10.09622 10.78444 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008588 B = 0.003493 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.724580 B = 8013.272436 C = 9924.076913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.088 0.912 4 C 0.042 3.958 5 N -0.515 5.515 6 C 0.024 3.976 7 C 0.044 3.956 8 C 0.446 3.554 9 O -0.576 6.576 10 N -0.565 5.565 11 C -0.297 4.297 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.682 5.682 20 C 0.591 3.409 21 O -0.552 6.552 22 C -0.070 4.070 23 C 0.172 3.828 24 N -0.586 5.586 25 H 0.425 0.575 26 C 0.478 3.522 27 O -0.525 6.525 28 C 0.043 3.957 29 N -0.366 5.366 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.014 0.986 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.414 0.586 43 H 0.190 0.810 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.062 -6.808 -7.083 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.106 0.894 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.124 4.124 7 C -0.087 4.087 8 C 0.231 3.769 9 O -0.460 6.460 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.756 3.244 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.332 5.332 20 C 0.376 3.624 21 O -0.431 6.431 22 C -0.194 4.194 23 C 0.036 3.964 24 N -0.219 5.219 25 H 0.265 0.735 26 C 0.273 3.727 27 O -0.400 6.400 28 C -0.148 4.148 29 N -0.081 5.081 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.033 0.967 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.224 0.776 41 H 0.081 0.919 42 H 0.250 0.750 43 H 0.207 0.793 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -16.601 -7.335 -7.485 19.632 hybrid contribution 0.770 1.144 -0.197 1.393 sum -15.831 -6.192 -7.682 18.654 Atomic orbital electron populations 1.22150 0.95019 1.02146 1.02685 1.21010 0.93260 0.97752 0.83917 0.89379 1.22492 0.89270 1.00930 0.95960 1.61549 1.03189 1.05758 1.53340 1.22545 1.04207 0.93501 0.92164 1.21927 0.95506 0.91830 0.99463 1.19715 0.87170 0.85188 0.84812 1.90477 1.75181 1.30335 1.50027 1.41864 1.08354 1.12155 1.57840 1.19679 0.82896 0.99372 1.40753 0.87993 1.25243 1.00528 0.94900 0.97260 1.69617 1.36821 1.02261 1.45666 0.85882 0.82083 0.78281 0.78182 1.20466 1.20948 1.19439 1.45486 1.64471 1.15816 1.07407 1.17119 0.77462 0.85417 0.82382 1.90796 1.51503 1.15483 1.85288 1.20447 1.13209 0.91491 0.94229 1.23219 0.87969 0.99765 0.85414 1.43672 1.52026 1.13278 1.12941 0.73526 1.18816 0.80068 0.81234 0.92534 1.91000 1.46077 1.64725 1.38210 1.24738 1.02063 1.02039 0.85972 1.67695 1.02064 1.07292 1.31018 0.91583 0.91785 0.92395 0.93217 0.90195 0.92252 0.88466 0.96748 0.89551 0.93475 0.77558 0.91927 0.74954 0.79272 0.78919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.46 37.16 0.35 -1.14 16 2 C 0.15 1.70 2.55 -67.93 -0.17 1.53 16 3 H 0.09 1.22 6.41 -51.93 -0.33 0.89 16 4 C 0.04 0.48 4.54 -3.82 -0.02 0.46 16 5 N -0.51 -7.95 4.16 -244.38 -1.02 -8.97 16 6 C 0.02 0.36 9.17 60.06 0.55 0.91 16 7 C 0.04 0.78 5.28 -4.97 -0.03 0.75 16 8 C 0.45 10.47 7.52 -10.98 -0.08 10.39 16 9 O -0.58 -15.27 13.88 5.55 0.08 -15.20 16 10 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 11 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 12 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 13 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 14 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 15 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.68 -8.64 4.81 -54.83 -0.26 -8.91 16 20 C 0.59 8.10 7.73 -12.45 -0.10 8.00 16 21 O -0.55 -8.62 15.96 5.28 0.08 -8.54 16 22 C -0.07 -0.83 6.71 -83.11 -0.56 -1.38 16 23 C 0.17 1.51 10.77 -16.28 -0.18 1.33 16 24 N -0.59 -4.67 5.28 -14.19 -0.08 -4.74 16 25 H 0.42 2.13 8.92 -40.82 -0.36 1.76 16 26 C 0.48 5.20 7.74 -14.82 -0.11 5.08 16 27 O -0.52 -7.26 17.95 5.04 0.09 -7.17 16 28 C 0.04 0.44 11.23 -16.72 -0.19 0.26 16 29 N -0.37 -4.29 9.62 -9.34 -0.09 -4.38 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.51 8.01 -51.93 -0.42 0.10 16 34 H 0.08 0.77 7.81 -51.93 -0.41 0.36 16 35 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 36 H 0.10 1.85 5.92 -51.93 -0.31 1.54 16 37 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 38 H 0.09 1.47 6.66 -51.93 -0.35 1.12 16 39 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 40 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.41 5.14 7.90 -40.82 -0.32 4.81 16 43 H 0.19 1.23 7.58 -52.49 -0.40 0.83 16 44 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -35.56 377.98 -6.30 -41.85 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -5.67 Total: 14.40 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: -0.77 Total: 18.22 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.78 Total: -65.47 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: 0.25 Total: -30.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.56 -6.30 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754323705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.869 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds