Wall clock time and date at job start Tue Mar 31 2020 21:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46971 * 2 1 4 4 C 1.53003 * 109.47147 * 120.00134 * 2 1 3 5 5 N 1.46901 * 109.47124 * 175.16185 * 4 2 1 6 6 C 1.46891 * 111.00012 * 198.92455 * 5 4 2 7 7 C 1.46906 * 110.99593 * 74.97362 * 5 4 2 8 8 C 1.50700 * 109.46742 * 189.99938 * 7 5 4 9 9 O 1.21291 * 120.00377 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99959 * 180.02562 * 8 7 5 11 11 C 1.37093 * 120.00066 * 180.02562 * 10 8 7 12 12 H 1.08007 * 120.00391 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00358 * 179.97438 * 11 10 8 14 14 N 1.31419 * 119.99658 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00340 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46621 * 90.00087 * 15 13 11 17 17 H 1.48499 * 109.47200 * 209.99675 * 15 13 11 18 18 H 1.48497 * 109.47364 * 330.00210 * 15 13 11 19 19 N 1.46498 * 109.46823 * 240.00137 * 2 1 3 20 20 C 1.34772 * 119.99888 * 82.99292 * 19 2 1 21 21 O 1.21592 * 120.00493 * 359.97438 * 20 19 2 22 22 C 1.47580 * 119.99941 * 179.97438 * 20 19 2 23 23 C 1.38046 * 119.72526 * 179.72552 * 22 20 19 24 24 N 1.34884 * 119.94577 * 179.74567 * 23 22 20 25 25 H 0.97003 * 120.30938 * 180.25230 * 24 23 22 26 26 C 1.34953 * 119.38321 * 0.52167 * 24 23 22 27 27 O 1.21861 * 120.27330 * 179.70058 * 26 24 23 28 28 C 1.41795 * 119.45831 * 359.72794 * 26 24 23 29 29 N 1.30597 * 120.03474 * 0.02562 * 28 26 24 30 30 H 1.09004 * 109.47447 * 300.00095 * 1 2 3 31 31 H 1.08999 * 109.47259 * 59.99235 * 1 2 3 32 32 H 1.09002 * 109.47490 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46834 * 295.16081 * 4 2 1 34 34 H 1.08994 * 109.47080 * 55.16216 * 4 2 1 35 35 H 1.09005 * 109.46868 * 54.12486 * 6 5 4 36 36 H 1.09003 * 109.47387 * 174.12030 * 6 5 4 37 37 H 1.08998 * 109.47815 * 294.12457 * 6 5 4 38 38 H 1.08995 * 109.47246 * 310.00138 * 7 5 4 39 39 H 1.08994 * 109.47103 * 70.00240 * 7 5 4 40 40 H 0.96999 * 119.99808 * 359.97438 * 10 8 7 41 41 H 0.96997 * 119.99787 * 180.02562 * 14 13 11 42 42 H 0.96995 * 119.99844 * 262.98615 * 19 2 1 43 43 H 1.07995 * 120.03003 * 0.02562 * 23 22 20 44 44 H 1.08001 * 119.97808 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5043 -0.8233 1.1923 6 6 3.9952 -1.8667 2.1023 7 6 4.1340 0.4709 1.4867 8 6 5.6077 0.3934 1.1817 9 8 6.0864 -0.6381 0.7600 10 7 6.3940 1.4705 1.3775 11 6 7.7346 1.4002 1.0995 12 1 8.1609 0.4816 0.7240 13 6 8.5451 2.5107 1.3008 14 7 8.0266 3.6284 1.7582 15 14 10.3719 2.4147 0.9227 16 1 10.6064 2.8093 -0.4897 17 1 11.1128 3.3344 1.8230 18 1 10.8487 1.0244 1.1339 19 7 2.0182 -0.6906 -1.1962 20 6 2.1086 -0.0287 -2.3667 21 8 1.7844 1.1415 -2.4301 22 6 2.6009 -0.7242 -3.5716 23 6 2.6858 -0.0423 -4.7689 24 7 3.1401 -0.6722 -5.8717 25 1 3.2053 -0.1972 -6.7149 26 6 3.4978 -1.9711 -5.7924 27 8 3.9052 -2.5575 -6.7799 28 6 3.3952 -2.6480 -4.5507 29 7 2.9570 -2.0154 -3.4956 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7491 -0.1599 2.1371 34 1 1.6076 -1.7208 1.2936 35 1 3.4878 -2.8066 1.8847 36 1 5.0690 -1.9932 1.9646 37 1 3.7929 -1.5747 3.1328 38 1 3.6760 1.2460 0.8723 39 1 3.9932 0.7121 2.5403 40 1 6.0111 2.2956 1.7144 41 1 8.5923 4.4037 1.8983 42 1 2.2766 -1.6241 -1.1457 43 1 2.3930 0.9958 -4.8216 44 1 3.6788 -3.6876 -4.4778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754323705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:57 Heat of formation + Delta-G solvation = -82.330215 kcal Electronic energy + Delta-G solvation = -29282.130495 eV Core-core repulsion = 25041.254832 eV Total energy + Delta-G solvation = -4240.875662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.84103 -40.83302 -40.22640 -38.73185 -38.11111 -36.40508 -36.05979 -35.46352 -33.25653 -32.39448 -31.04347 -29.55097 -27.91525 -26.59068 -26.53504 -25.75017 -23.83231 -22.83925 -21.62059 -20.82090 -20.26327 -19.83409 -19.49363 -18.26389 -17.83540 -17.26151 -17.14311 -17.03775 -16.60489 -16.55980 -16.05324 -15.82868 -15.73002 -15.47662 -15.28502 -15.01178 -14.98967 -14.47462 -14.09283 -13.78698 -13.67101 -13.40118 -13.26268 -13.05403 -12.88694 -12.85769 -12.80063 -12.73123 -12.58688 -12.44019 -12.34910 -12.12935 -11.66448 -11.42842 -11.23492 -10.57692 -10.23868 -9.99427 -9.97031 -9.39684 -9.14201 -8.45454 -5.93718 -0.57681 0.07763 1.37022 1.40358 1.42729 1.53048 1.77400 2.08224 2.24618 2.29506 2.64904 2.81769 3.05862 3.12365 3.21571 3.41109 3.69556 3.86910 3.89825 4.16808 4.23176 4.25289 4.38786 4.45980 4.54854 4.62891 4.70014 4.76281 4.79390 4.84526 4.90505 5.12310 5.15126 5.25212 5.27885 5.36922 5.41724 5.62338 5.91093 6.10295 6.26231 6.33125 6.50768 6.62483 6.72959 7.14888 7.28705 7.58813 8.15085 8.72207 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008588 B = 0.003493 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.724580 B = 8013.272436 C = 9924.076913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.064 0.936 4 C 0.048 3.952 5 N -0.531 5.531 6 C 0.029 3.971 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.609 6.609 10 N -0.578 5.578 11 C -0.330 4.330 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.922 5.922 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.272 1.272 19 N -0.682 5.682 20 C 0.585 3.415 21 O -0.579 6.579 22 C -0.100 4.100 23 C 0.199 3.801 24 N -0.569 5.569 25 H 0.441 0.559 26 C 0.478 3.522 27 O -0.557 6.557 28 C 0.035 3.965 29 N -0.376 5.376 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.028 0.972 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.394 0.606 41 H 0.277 0.723 42 H 0.415 0.585 43 H 0.216 0.784 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.247 -6.724 -6.868 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.080 4.080 5 N -0.255 5.255 6 C -0.119 4.119 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.495 6.495 10 N -0.215 5.215 11 C -0.459 4.459 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.814 3.186 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.330 5.330 20 C 0.370 3.630 21 O -0.460 6.460 22 C -0.224 4.224 23 C 0.061 3.939 24 N -0.202 5.202 25 H 0.284 0.716 26 C 0.274 3.726 27 O -0.435 6.435 28 C -0.155 4.155 29 N -0.092 5.092 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.227 0.773 41 H 0.086 0.914 42 H 0.251 0.749 43 H 0.233 0.767 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -17.819 -7.245 -7.262 20.561 hybrid contribution 1.075 1.099 -0.272 1.561 sum -16.744 -6.146 -7.534 19.362 Atomic orbital electron populations 1.22055 0.92831 1.03210 1.02845 1.21097 0.94889 0.96389 0.83786 0.91798 1.22577 0.86261 1.02776 0.96375 1.61466 1.05688 1.04494 1.53878 1.22419 1.01702 0.94791 0.92958 1.21739 0.91207 0.93613 1.00722 1.20779 0.89435 0.83907 0.82841 1.90459 1.76604 1.31450 1.50987 1.41952 1.07971 1.12900 1.58715 1.19629 0.84555 0.99140 1.42617 0.90413 1.26001 1.04436 0.94250 0.96574 1.69679 1.38290 1.02645 1.45699 0.84969 0.77072 0.78221 0.78329 1.19869 1.19483 1.19710 1.45569 1.64080 1.15814 1.07573 1.17404 0.77174 0.85258 0.83117 1.90769 1.52940 1.16493 1.85819 1.20396 1.15239 0.92007 0.94737 1.23472 0.85612 1.00318 0.84465 1.43554 1.50502 1.12571 1.13565 0.71560 1.18880 0.79633 0.81884 0.92183 1.90988 1.47720 1.65639 1.39155 1.24998 1.02074 1.02832 0.85561 1.67645 1.02451 1.07515 1.31552 0.89809 0.93233 0.90829 0.91205 0.87621 0.89494 0.92945 0.95326 0.88768 0.91415 0.77275 0.91394 0.74858 0.76697 0.77268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.46 71.98 0.68 -1.75 16 2 C 0.14 3.11 2.55 44.99 0.11 3.23 16 3 H 0.06 1.72 6.41 -2.39 -0.02 1.70 16 4 C 0.05 0.95 4.54 86.30 0.39 1.34 16 5 N -0.53 -15.62 4.16 -927.07 -3.86 -19.48 16 6 C 0.03 0.84 9.17 127.69 1.17 2.01 16 7 C 0.06 2.02 5.28 85.56 0.45 2.47 16 8 C 0.44 21.19 7.52 87.66 0.66 21.85 16 9 O -0.61 -33.31 13.88 -3.06 -0.04 -33.35 16 10 N -0.58 -30.14 5.29 -306.98 -1.62 -31.76 16 11 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 12 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -50.47 13.05 21.66 0.28 -50.19 16 15 Si 0.99 43.55 29.55 68.60 2.03 45.57 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 N -0.68 -16.68 4.81 -445.66 -2.15 -18.83 16 20 C 0.58 15.78 7.73 86.71 0.67 16.45 16 21 O -0.58 -17.95 15.96 -4.00 -0.06 -18.01 16 22 C -0.10 -2.30 6.71 41.21 0.28 -2.03 16 23 C 0.20 3.20 10.77 84.18 0.91 4.10 16 24 N -0.57 -8.25 5.28 -316.87 -1.67 -9.92 16 25 H 0.44 3.61 8.92 -92.71 -0.83 2.78 16 26 C 0.48 10.05 7.74 85.09 0.66 10.71 16 27 O -0.56 -15.20 17.95 -4.86 -0.09 -15.29 16 28 C 0.04 0.72 11.23 85.76 0.96 1.68 16 29 N -0.38 -8.67 9.62 -183.46 -1.77 -10.44 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.17 8.01 -2.39 -0.02 1.15 16 34 H 0.11 1.61 7.81 -2.39 -0.02 1.59 16 35 H 0.09 1.99 7.94 -2.38 -0.02 1.97 16 36 H 0.05 2.01 5.92 -2.39 -0.01 2.00 16 37 H 0.03 0.73 8.13 -2.39 -0.02 0.71 16 38 H 0.09 3.14 6.66 -2.39 -0.02 3.12 16 39 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 40 H 0.39 19.72 7.90 -92.71 -0.73 18.99 16 41 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.41 9.91 7.90 -92.71 -0.73 9.17 16 43 H 0.22 2.35 7.58 -2.91 -0.02 2.32 16 44 H 0.21 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -78.96 377.98 -1.93 -80.89 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -1.21 Total: 39.12 kcal Atomic # 6 Polarization: 33.45 SS G_CDS: 8.22 Total: 41.67 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -10.78 Total: -140.61 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -0.19 Total: -66.65 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.96 -1.93 -80.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754323705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.439 kcal (2) G-P(sol) polarization free energy of solvation -78.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds