Wall clock time and date at job start Tue Mar 31 2020 19:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34946 * 126.54394 * 2 1 4 4 O 1.35204 * 125.49456 * 0.02562 * 3 2 1 5 5 N 1.31535 * 109.01495 * 180.27344 * 3 2 1 6 6 C 1.33232 * 109.76053 * 359.73323 * 5 3 2 7 7 C 1.36719 * 107.95980 * 359.97438 * 6 5 3 8 8 C 1.46376 * 126.82297 * 180.02562 * 7 6 5 9 9 O 1.21737 * 120.00040 * 188.12177 * 8 7 6 10 10 N 1.34779 * 120.00331 * 8.11636 * 8 7 6 11 11 C 1.47425 * 125.64386 * 358.84710 * 10 8 7 12 12 C 1.54907 * 104.83234 * 155.84908 * 11 10 8 13 13 C 1.55154 * 101.58211 * 37.00563 * 12 11 10 14 14 H 1.09002 * 110.72189 * 82.86735 * 13 12 11 15 15 N 1.46905 * 110.72266 * 206.13623 * 13 12 11 16 16 C 1.46902 * 111.00321 * 199.97629 * 15 13 12 17 17 C 1.50699 * 109.47086 * 179.97438 * 16 15 13 18 18 O 1.21294 * 119.99976 * 0.02562 * 17 16 15 19 19 N 1.34766 * 119.99912 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00363 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99173 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00543 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99928 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00355 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46790 * 59.99817 * 24 22 20 26 26 H 1.48495 * 109.47272 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47169 * 300.00195 * 24 22 20 28 28 C 1.47019 * 125.65163 * 178.81455 * 10 8 7 29 29 H 1.09006 * 109.47141 * 274.97816 * 1 2 3 30 30 H 1.09004 * 109.47235 * 34.97671 * 1 2 3 31 31 H 1.08997 * 109.47556 * 154.98053 * 1 2 3 32 32 H 0.96696 * 114.00229 * 270.34342 * 4 3 2 33 33 H 1.07990 * 126.01852 * 179.97438 * 6 5 3 34 34 H 1.09007 * 110.36205 * 274.68335 * 11 10 8 35 35 H 1.09000 * 110.37046 * 37.00761 * 11 10 8 36 36 H 1.09003 * 111.00726 * 155.08299 * 12 11 10 37 37 H 1.08997 * 111.00378 * 278.93407 * 12 11 10 38 38 H 1.00901 * 110.99707 * 76.01839 * 15 13 12 39 39 H 1.08998 * 109.46705 * 300.00301 * 16 15 13 40 40 H 1.08996 * 109.46870 * 59.99745 * 16 15 13 41 41 H 0.96999 * 120.00263 * 0.02562 * 19 17 16 42 42 H 0.97002 * 120.00075 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.88403 * 300.49933 * 28 10 8 44 44 H 1.09006 * 109.87976 * 61.66485 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8516 2.3703 0.0005 5 7 3.5228 0.6880 -0.0059 6 6 3.5747 -0.6433 -0.0041 7 6 2.2915 -1.1152 0.0040 8 6 1.8726 -2.5177 0.0091 9 8 0.6976 -2.8025 -0.1327 10 7 2.7878 -3.4939 0.1709 11 6 4.2397 -3.2928 0.3282 12 6 4.7364 -4.5556 1.0753 13 6 3.8472 -5.6601 0.4453 14 1 4.2662 -5.9987 -0.5022 15 7 3.6812 -6.7863 1.3739 16 6 3.2684 -8.0015 0.6591 17 6 3.1092 -9.1327 1.6420 18 8 3.3186 -8.9450 2.8219 19 7 2.7332 -10.3527 1.2101 20 6 2.5879 -11.3818 2.1043 21 1 2.7751 -11.2147 3.1548 22 6 2.2008 -12.6397 1.6590 23 7 1.9735 -12.8430 0.3807 24 14 2.0034 -14.0420 2.8772 25 1 0.9700 -13.6832 3.8817 26 1 1.5855 -15.2702 2.1548 27 1 3.2971 -14.2869 3.5639 28 6 2.5034 -4.9355 0.2203 29 1 -0.3634 0.0892 1.0238 30 1 -0.3634 0.8421 -0.5891 31 1 -0.3634 -0.9312 -0.4346 32 1 1.7249 2.7431 -0.8827 33 1 4.4722 -1.2438 -0.0082 34 1 4.7199 -3.2158 -0.6474 35 1 4.4370 -2.3993 0.9206 36 1 5.7913 -4.7402 0.8723 37 1 4.5552 -4.4721 2.1468 38 1 3.0262 -6.5574 2.1064 39 1 2.3191 -7.8215 0.1548 40 1 4.0271 -8.2650 -0.0778 41 1 2.5655 -10.5028 0.2666 42 1 1.7036 -13.7213 0.0698 43 1 1.8234 -5.1512 1.0444 44 1 2.0612 -5.2586 -0.7222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184834310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:57 Heat of formation + Delta-G solvation = -16.271259 kcal Electronic energy + Delta-G solvation = -28355.452245 eV Core-core repulsion = 24117.441114 eV Total energy + Delta-G solvation = -4238.011131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.72803 -40.22351 -38.49587 -37.88563 -37.64462 -35.06455 -34.39252 -33.81760 -31.40805 -31.09751 -30.20830 -28.42361 -27.49219 -26.22517 -24.73508 -23.70062 -22.40387 -22.12554 -20.92222 -19.94203 -19.30550 -19.03023 -17.95068 -17.53804 -17.09149 -16.91702 -16.13579 -15.86400 -15.78732 -15.28297 -14.93153 -14.64334 -14.52087 -14.35497 -14.20063 -13.72550 -13.62310 -13.30911 -13.24222 -13.14766 -12.88085 -12.57616 -12.54949 -12.36153 -11.94630 -11.65736 -11.49844 -11.39906 -11.03142 -10.96022 -10.71515 -10.45277 -10.29368 -10.22981 -10.21450 -9.51908 -9.11685 -8.88628 -8.53154 -8.17471 -7.98455 -6.43339 -3.84352 0.74470 1.67594 2.16552 2.67667 2.90368 3.19308 3.25279 3.29538 3.31276 3.87460 3.90006 4.06360 4.24646 4.29760 4.34463 4.44655 4.55405 4.74101 4.79246 4.89673 4.95246 5.06937 5.11758 5.12787 5.20127 5.24408 5.49336 5.51709 5.56138 5.73006 5.78827 5.88267 5.89419 5.91778 5.95537 6.03341 6.23203 6.98810 7.04847 7.10290 7.30451 7.50022 7.53577 7.74512 8.03832 8.58736 9.15841 9.51804 10.02900 10.74170 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.030557 B = 0.001823 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.088326 B =15355.721055 C =15830.862168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.428 5.428 3 C 0.396 3.604 4 O -0.439 6.439 5 N -0.487 5.487 6 C 0.041 3.959 7 C -0.073 4.073 8 C 0.608 3.392 9 O -0.545 6.545 10 N -0.599 5.599 11 C 0.079 3.921 12 C -0.121 4.121 13 C 0.078 3.922 14 H 0.098 0.902 15 N -0.652 5.652 16 C 0.047 3.953 17 C 0.439 3.561 18 O -0.584 6.584 19 N -0.562 5.562 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.080 3.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.405 0.595 33 H 0.199 0.801 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.353 0.647 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.074 0.926 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 26.444 -7.310 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.121 5.121 3 C 0.097 3.903 4 O -0.240 6.240 5 N -0.215 5.215 6 C -0.113 4.113 7 C -0.189 4.189 8 C 0.397 3.603 9 O -0.424 6.424 10 N -0.332 5.332 11 C -0.044 4.044 12 C -0.159 4.159 13 C -0.034 4.034 14 H 0.116 0.884 15 N -0.283 5.283 16 C -0.085 4.085 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.044 4.044 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.262 0.738 33 H 0.216 0.784 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.174 0.826 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.678 26.699 -6.092 27.436 hybrid contribution -2.070 -0.902 -0.803 2.396 sum -0.392 25.797 -6.895 26.705 Atomic orbital electron populations 1.22352 0.74998 1.06116 1.04456 1.45651 1.08540 1.05516 1.52354 1.20285 0.84531 0.81392 1.04124 1.84835 1.86983 1.17871 1.34281 1.70369 1.16390 1.12857 1.21918 1.23334 0.96148 0.90247 1.01615 1.20428 0.91156 0.88085 1.19221 1.16192 0.84591 0.82440 0.77103 1.90818 1.16803 1.83470 1.51270 1.47940 1.07661 1.06335 1.71276 1.23003 0.79901 1.00289 1.01159 1.22835 1.00472 0.91731 1.00907 1.22738 0.92841 0.90868 0.96950 0.88368 1.60214 1.54839 1.01479 1.11803 1.21759 0.99696 0.90620 0.96464 1.19761 0.84459 0.84043 0.89276 1.90531 1.55660 1.83125 1.17495 1.41850 1.59426 1.07950 1.10617 1.19657 1.43232 0.87885 0.92242 0.87942 1.25267 0.97144 0.98810 0.96684 1.69603 1.46746 1.24366 1.13525 0.85909 0.78958 0.79568 0.79735 1.19917 1.20977 1.19856 1.23014 0.99698 0.78867 1.02859 0.89920 0.89543 0.86963 0.73784 0.78417 0.90150 0.88960 0.88786 0.89616 0.82557 0.93569 0.89286 0.77432 0.91792 0.90808 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.84 59.85 0.65 1.10 16 2 N -0.43 -4.12 3.20 -122.12 -0.39 -4.51 16 3 C 0.40 3.79 9.01 -89.59 -0.81 2.98 16 4 O -0.44 -2.99 13.53 -17.31 -0.23 -3.22 16 5 N -0.49 -5.27 11.22 -14.62 -0.16 -5.43 16 6 C 0.04 0.38 10.20 -17.49 -0.18 0.20 16 7 C -0.07 -0.77 6.87 -81.98 -0.56 -1.33 16 8 C 0.61 7.31 7.80 -12.99 -0.10 7.21 16 9 O -0.54 -8.10 15.12 5.16 0.08 -8.02 16 10 N -0.60 -6.09 3.33 -172.16 -0.57 -6.66 16 11 C 0.08 0.55 5.27 -2.53 -0.01 0.53 16 12 C -0.12 -0.98 6.77 -24.59 -0.17 -1.15 16 13 C 0.08 0.80 3.23 -65.88 -0.21 0.59 16 14 H 0.10 0.91 7.90 -51.93 -0.41 0.50 16 15 N -0.65 -9.43 5.98 -106.05 -0.63 -10.06 16 16 C 0.05 0.77 6.02 -4.98 -0.03 0.74 16 17 C 0.44 10.05 7.82 -10.99 -0.09 9.97 16 18 O -0.58 -15.50 15.78 5.55 0.09 -15.42 16 19 N -0.56 -13.98 5.29 -10.97 -0.06 -14.03 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.08 0.88 6.52 -3.07 -0.02 0.86 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.99 6.14 -51.93 -0.32 0.67 16 32 H 0.40 0.55 9.06 45.56 0.41 0.97 16 33 H 0.20 1.26 4.71 -52.49 -0.25 1.01 16 34 H 0.08 0.41 8.03 -51.93 -0.42 -0.01 16 35 H 0.09 0.54 5.31 -51.93 -0.28 0.27 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.35 5.47 7.86 -39.29 -0.31 5.16 16 39 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 41 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.07 0.92 7.57 -51.93 -0.39 0.53 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -36.30 369.78 -7.13 -43.43 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.75 Total: 12.26 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: -1.77 Total: 13.76 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -1.10 Total: -64.27 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.07 Total: -26.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.30 -7.13 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184834310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.158 kcal (2) G-P(sol) polarization free energy of solvation -36.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds