Wall clock time and date at job start Tue Mar 31 2020 19:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36346 * 126.19976 * 2 1 4 4 C 1.36242 * 106.89000 * 179.97438 * 3 2 1 5 5 C 1.47254 * 126.16348 * 179.97438 * 4 3 2 6 6 O 1.21633 * 120.00141 * 354.79038 * 5 4 3 7 7 N 1.34776 * 119.99744 * 174.78425 * 5 4 3 8 8 C 1.46505 * 120.00192 * 185.16407 * 7 5 4 9 9 C 1.52997 * 109.47203 * 186.71950 * 8 7 5 10 10 N 1.46902 * 115.55113 * 36.52002 * 9 8 7 11 11 C 1.46897 * 111.00143 * 64.68861 * 10 9 8 12 12 C 1.50703 * 109.46828 * 182.86973 * 11 10 9 13 13 O 1.21292 * 120.00103 * 4.88701 * 12 11 10 14 14 N 1.34780 * 119.99867 * 184.88087 * 12 11 10 15 15 C 1.37093 * 120.00031 * 185.19329 * 14 12 11 16 16 H 1.08000 * 119.99917 * 5.18586 * 15 14 12 17 17 C 1.38950 * 120.00150 * 185.17858 * 15 14 12 18 18 N 1.31407 * 120.00554 * 183.97206 * 17 15 14 19 19 Si 1.86803 * 119.99937 * 3.97753 * 17 15 14 20 20 H 1.48498 * 109.47455 * 92.39529 * 19 17 15 21 21 H 1.48499 * 109.47024 * 212.40036 * 19 17 15 22 22 H 1.48506 * 109.46976 * 332.39460 * 19 17 15 23 23 C 1.52995 * 117.49979 * 250.84410 * 9 8 7 24 24 C 1.53001 * 117.49597 * 182.18581 * 9 8 7 25 25 N 1.36037 * 107.67318 * 359.97438 * 4 3 2 26 26 C 1.30705 * 108.93651 * 0.02562 * 25 4 3 27 27 O 1.35458 * 125.54452 * 179.97438 * 26 25 4 28 28 H 1.09001 * 109.46992 * 90.00389 * 1 2 3 29 29 H 1.08996 * 109.46724 * 209.99973 * 1 2 3 30 30 H 1.09000 * 109.47229 * 329.99652 * 1 2 3 31 31 H 1.08004 * 126.55421 * 0.23729 * 3 2 1 32 32 H 0.97001 * 120.00526 * 5.16454 * 7 5 4 33 33 H 1.08999 * 109.46925 * 306.72417 * 8 7 5 34 34 H 1.09001 * 109.46838 * 66.71737 * 8 7 5 35 35 H 1.00901 * 110.99620 * 300.73236 * 10 9 8 36 36 H 1.08997 * 109.46949 * 302.87036 * 11 10 9 37 37 H 1.08997 * 109.47202 * 62.87276 * 11 10 9 38 38 H 0.97001 * 119.99464 * 5.20305 * 14 12 11 39 39 H 0.96996 * 120.00712 * 180.02562 * 18 17 15 40 40 H 1.09000 * 117.49723 * 0.02562 * 23 9 8 41 41 H 1.08999 * 117.50201 * 145.02468 * 23 9 8 42 42 H 1.09006 * 117.49913 * 214.97975 * 24 9 8 43 43 H 1.09000 * 117.50144 * 359.97438 * 24 9 8 44 44 H 0.96696 * 113.99754 * 90.03073 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1003 0.0000 4 6 3.5560 0.6497 0.0006 5 6 4.7692 1.4844 0.0003 6 8 4.6757 2.6933 -0.0962 7 7 5.9831 0.9087 0.1070 8 6 7.1821 1.7430 0.2207 9 6 8.4278 0.8568 0.1590 10 7 8.3441 -0.2912 -0.7537 11 6 8.2203 0.1530 -2.1484 12 6 8.0665 -1.0476 -3.0462 13 8 7.9715 -2.1568 -2.5646 14 7 8.0343 -0.8888 -4.3842 15 6 7.7881 -1.9654 -5.1965 16 1 7.5372 -2.9224 -4.7635 17 6 7.8611 -1.8252 -6.5770 18 7 7.5493 -2.8353 -7.3575 19 14 8.4027 -0.2007 -7.3235 20 1 9.8704 -0.2241 -7.5484 21 1 7.7066 0.0053 -8.6189 22 1 8.0616 0.9082 -6.3965 23 6 9.2314 0.6771 1.4485 24 6 9.7885 1.5393 0.3130 25 7 3.5172 -0.7101 0.0015 26 6 2.2692 -1.0988 0.0010 27 8 1.8452 -2.3852 0.0011 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.9500 2.1317 0.0036 32 1 6.0631 -0.0580 0.1086 33 1 7.2050 2.4598 -0.6001 34 1 7.1635 2.2783 1.1700 35 1 7.5813 -0.9006 -0.4992 36 1 7.3460 0.7961 -2.2486 37 1 9.1140 0.7079 -2.4337 38 1 8.1856 -0.0128 -4.7724 39 1 7.6006 -2.7376 -8.3212 40 1 8.8724 1.1898 2.3408 41 1 9.6984 -0.2928 1.6194 42 1 10.6217 1.1361 -0.2627 43 1 9.7962 2.6196 0.4577 44 1 1.7211 -2.7583 0.8845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499339727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:41 Heat of formation + Delta-G solvation = -0.069329 kcal Electronic energy + Delta-G solvation = -29054.374563 eV Core-core repulsion = 24817.066001 eV Total energy + Delta-G solvation = -4237.308562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.43099 -39.78191 -38.60925 -37.78855 -37.48330 -34.59080 -34.06104 -34.00136 -32.70991 -31.57090 -29.51776 -28.19349 -26.89978 -26.44208 -23.84929 -23.20210 -22.39295 -21.68750 -20.33841 -19.62123 -19.28763 -18.83923 -18.27707 -17.82618 -16.80218 -16.58878 -15.88874 -15.76678 -15.35748 -15.20296 -14.94565 -14.66250 -14.58932 -14.57239 -14.08912 -13.83597 -13.62470 -13.28097 -13.23954 -13.05635 -12.72719 -12.48549 -12.41403 -12.20148 -12.05786 -11.54851 -11.45811 -11.10306 -10.67634 -10.56569 -10.50470 -10.16455 -10.10585 -9.94287 -9.90515 -9.50970 -9.12948 -8.73462 -8.57475 -8.21995 -8.09929 -6.25252 -3.76028 1.27647 1.87274 2.09318 2.99077 3.07074 3.13667 3.20016 3.37493 3.50157 3.74629 3.80064 4.02721 4.16205 4.23674 4.32691 4.54558 4.63374 4.78732 4.81945 4.91027 4.92449 5.09958 5.17540 5.29591 5.47644 5.55150 5.56704 5.62267 5.64563 5.82165 5.89775 5.94943 6.00077 6.00968 6.19262 6.20352 6.34178 7.11382 7.22143 7.28893 7.50963 7.62447 7.64567 8.16739 8.21107 8.66264 9.01297 9.49188 9.89215 10.87970 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.003733 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.308087 B = 7498.863885 C = 9698.893921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.464 5.464 3 C 0.043 3.957 4 C -0.048 4.048 5 C 0.609 3.391 6 O -0.545 6.545 7 N -0.713 5.713 8 C 0.130 3.870 9 C 0.013 3.987 10 N -0.625 5.625 11 C 0.048 3.952 12 C 0.452 3.548 13 O -0.565 6.565 14 N -0.591 5.591 15 C -0.302 4.302 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.882 5.882 19 Si 0.882 3.118 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.271 1.271 23 C -0.153 4.153 24 C -0.151 4.151 25 N -0.448 5.448 26 C 0.382 3.618 27 O -0.435 6.435 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.195 0.805 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.353 0.647 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.371 0.629 39 H 0.272 0.728 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 11.372 19.803 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.159 5.159 3 C -0.094 4.094 4 C -0.178 4.178 5 C 0.395 3.605 6 O -0.423 6.423 7 N -0.366 5.366 8 C 0.004 3.996 9 C -0.080 4.080 10 N -0.259 5.259 11 C -0.084 4.084 12 C 0.238 3.762 13 O -0.447 6.447 14 N -0.231 5.231 15 C -0.431 4.431 16 H 0.136 0.864 17 C -0.161 4.161 18 N -0.523 5.523 19 Si 0.709 3.291 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.197 1.197 23 C -0.190 4.190 24 C -0.189 4.189 25 N -0.178 5.178 26 C 0.081 3.919 27 O -0.235 6.235 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.212 0.788 32 H 0.247 0.753 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.175 0.825 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.205 0.795 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.386 10.663 19.194 24.290 hybrid contribution -1.474 1.317 -0.496 2.038 sum -11.861 11.979 18.699 25.176 Atomic orbital electron populations 1.22127 0.75693 1.04883 1.04483 1.45863 1.08427 1.06563 1.55033 1.22598 0.89663 0.92449 1.04739 1.20342 0.93408 0.89693 1.14307 1.16755 0.81820 0.86177 0.75730 1.90796 1.86810 1.13555 1.51096 1.45749 1.05497 1.11345 1.73977 1.21380 0.82700 0.93026 1.02454 1.21691 0.91951 0.95401 0.98932 1.60068 1.51496 1.14088 1.00223 1.21690 1.01391 0.96636 0.88688 1.19691 0.83814 0.89965 0.82768 1.90565 1.53738 1.25889 1.74486 1.42235 1.64960 1.10401 1.05537 1.19423 1.44084 0.91999 0.87558 0.86369 1.25035 0.97670 0.97567 0.95869 1.69625 1.47505 1.30607 1.04515 0.86632 0.79642 0.83248 0.79586 1.19637 1.20298 1.19665 1.23160 1.02449 1.02192 0.91247 1.23057 0.95478 0.98406 1.01970 1.70928 1.16896 1.10730 1.19231 1.20280 0.84008 0.81584 1.06028 1.84971 1.86615 1.17947 1.33970 0.89811 0.89182 0.89023 0.78766 0.75327 0.90520 0.90928 0.82469 0.93273 0.89478 0.79531 0.91696 0.88661 0.87772 0.87684 0.88570 0.74189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.11 59.85 0.66 0.96 16 2 N -0.46 -4.24 3.16 -125.77 -0.40 -4.64 16 3 C 0.04 0.46 11.29 -16.26 -0.18 0.27 16 4 C -0.05 -0.67 6.97 -83.06 -0.58 -1.25 16 5 C 0.61 9.13 7.80 -12.60 -0.10 9.04 16 6 O -0.54 -9.06 16.84 5.25 0.09 -8.97 16 7 N -0.71 -9.89 5.30 -61.43 -0.33 -10.22 16 8 C 0.13 1.61 5.07 -4.04 -0.02 1.59 16 9 C 0.01 0.16 2.06 -131.60 -0.27 -0.11 16 10 N -0.63 -10.06 6.14 -101.22 -0.62 -10.68 16 11 C 0.05 0.86 6.07 -4.98 -0.03 0.83 16 12 C 0.45 10.76 7.82 -10.98 -0.09 10.68 16 13 O -0.56 -15.63 15.69 5.55 0.09 -15.54 16 14 N -0.59 -14.80 5.06 -10.96 -0.06 -14.85 16 15 C -0.30 -8.86 10.14 -14.94 -0.15 -9.01 16 16 H 0.12 3.94 7.42 -52.49 -0.39 3.55 16 17 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 18 N -0.88 -26.47 13.96 55.50 0.77 -25.70 16 19 Si 0.88 20.24 27.94 -169.99 -4.75 15.49 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -5.68 6.24 56.52 0.35 -5.33 16 23 C -0.15 -1.57 10.11 -26.70 -0.27 -1.84 16 24 C -0.15 -1.58 10.18 -26.69 -0.27 -1.85 16 25 N -0.45 -6.62 11.04 -11.22 -0.12 -6.74 16 26 C 0.38 4.57 9.03 -89.17 -0.81 3.77 16 27 O -0.44 -4.26 13.55 -18.07 -0.24 -4.50 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.24 8.13 -51.93 -0.42 -0.19 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.20 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.41 5.93 6.48 -40.82 -0.26 5.67 16 33 H 0.08 1.01 7.98 -51.93 -0.41 0.60 16 34 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.35 6.09 6.54 -39.29 -0.26 5.83 16 36 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.37 8.29 5.68 -40.82 -0.23 8.06 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.10 0.81 8.06 -51.93 -0.42 0.39 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.40 1.60 9.06 45.56 0.41 2.01 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -38.87 382.11 -6.93 -45.80 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -4.92 Total: 20.65 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -2.20 Total: 14.15 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -0.75 Total: -72.83 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.07 Total: -29.01 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.75 Total: 15.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.87 -6.93 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499339727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.728 kcal (2) G-P(sol) polarization free energy of solvation -38.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds