Wall clock time and date at job start Tue Mar 31 2020 19:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34133 * 125.66883 * 2 1 4 4 C 1.38194 * 107.53178 * 180.02562 * 3 2 1 5 5 C 1.47082 * 126.46236 * 180.02562 * 4 3 2 6 6 O 1.21540 * 119.99622 * 179.97438 * 5 4 3 7 7 O 1.34779 * 119.99772 * 359.97364 * 5 4 3 8 8 C 1.41868 * 107.07293 * 0.02562 * 4 3 2 9 9 N 1.39778 * 126.07647 * 180.02562 * 8 4 3 10 10 C 1.34776 * 119.99835 * 179.97438 * 9 8 4 11 11 O 1.21595 * 119.99938 * 354.88817 * 10 9 8 12 12 N 1.34779 * 120.00284 * 174.88848 * 10 9 8 13 13 C 1.47076 * 120.88148 * 184.71964 * 12 10 9 14 14 C 1.53695 * 108.27775 * 128.75400 * 13 12 10 15 15 N 1.46904 * 109.25710 * 54.08004 * 14 13 12 16 16 C 1.46903 * 111.00037 * 172.61038 * 15 14 13 17 17 C 1.50701 * 109.46539 * 294.30143 * 16 15 14 18 18 H 1.07994 * 120.00806 * 359.97438 * 17 16 15 19 19 C 1.37888 * 119.99436 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00223 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99625 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47628 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46905 * 119.99930 * 21 19 17 24 24 H 1.48495 * 109.47299 * 239.99715 * 21 19 17 25 25 C 1.46904 * 111.26587 * 296.75589 * 15 14 13 26 26 C 1.47080 * 120.87684 * 4.98961 * 12 10 9 27 27 N 1.30902 * 107.84232 * 359.97438 * 8 4 3 28 28 H 1.09002 * 109.47228 * 269.97560 * 1 2 3 29 29 H 1.09004 * 109.47034 * 29.97137 * 1 2 3 30 30 H 1.08999 * 109.47195 * 149.97085 * 1 2 3 31 31 H 1.08000 * 126.22744 * 0.02562 * 3 2 1 32 32 H 0.96699 * 116.99716 * 179.97438 * 7 5 4 33 33 H 0.96995 * 120.00564 * 359.96746 * 9 8 4 34 34 H 1.08999 * 109.62566 * 248.51825 * 13 12 10 35 35 H 1.09000 * 109.62875 * 9.10028 * 13 12 10 36 36 H 1.08998 * 109.64604 * 294.07349 * 14 13 12 37 37 H 1.09000 * 109.44364 * 173.95959 * 14 13 12 38 38 H 1.09003 * 109.46952 * 54.29552 * 16 15 14 39 39 H 1.08995 * 109.47190 * 174.30052 * 16 15 14 40 40 H 0.96998 * 120.00233 * 180.02562 * 20 19 17 41 41 H 1.08992 * 109.49316 * 303.14405 * 25 15 14 42 42 H 1.09001 * 109.48932 * 183.06411 * 25 15 14 43 43 H 1.08996 * 109.63228 * 350.90594 * 26 12 10 44 44 H 1.09008 * 109.62033 * 111.48027 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0897 0.0000 4 6 3.5604 0.6595 -0.0006 5 6 4.7593 1.5115 -0.0003 6 8 5.8643 1.0055 -0.0004 7 8 4.6324 2.8533 0.0001 8 6 3.5340 -0.7589 -0.0016 9 7 4.6483 -1.6029 -0.0019 10 6 4.4807 -2.9402 -0.0023 11 8 3.3644 -3.4130 0.0914 12 7 5.5504 -3.7534 -0.1066 13 6 5.3833 -5.2108 -0.2127 14 6 6.1915 -5.7017 -1.4243 15 7 7.5816 -5.2441 -1.2970 16 6 8.4284 -5.8362 -2.3412 17 6 8.5133 -7.3265 -2.1339 18 1 7.9909 -7.7876 -1.3088 19 6 9.2589 -8.1012 -2.9971 20 7 9.8955 -7.5397 -4.0015 21 14 9.3647 -9.9484 -2.7397 22 1 8.5639 -10.3289 -1.5485 23 1 8.8318 -10.6463 -3.9374 24 1 10.7820 -10.3385 -2.5292 25 6 7.6641 -3.7776 -1.3211 26 6 6.9161 -3.2073 -0.1114 27 7 2.2807 -1.1368 -0.0010 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 1.9115 2.1162 0.0004 32 1 5.4488 3.3715 0.0007 33 1 5.5421 -1.2262 -0.0019 34 1 5.7518 -5.6886 0.6950 35 1 4.3290 -5.4491 -0.3532 36 1 5.7587 -5.3001 -2.3406 37 1 6.1687 -6.7910 -1.4584 38 1 7.9960 -5.6297 -3.3202 39 1 9.4277 -5.4043 -2.2869 40 1 10.4198 -8.0848 -4.6090 41 1 7.2110 -3.4028 -2.2387 42 1 8.7095 -3.4715 -1.2797 43 1 6.8757 -2.1206 -0.1848 44 1 7.4291 -3.4964 0.8060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574211708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:07 Heat of formation + Delta-G solvation = -7.271086 kcal Electronic energy + Delta-G solvation = -29213.732296 eV Core-core repulsion = 24976.111442 eV Total energy + Delta-G solvation = -4237.620854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89751 -40.18563 -39.87491 -37.69691 -36.32481 -35.17054 -34.42770 -32.75358 -32.26598 -30.87198 -30.58621 -28.31128 -27.18381 -25.51096 -24.06583 -23.25747 -22.60251 -21.77915 -21.15602 -20.16303 -19.11009 -18.25604 -18.02696 -17.60786 -16.73816 -16.37133 -16.30883 -15.82162 -15.52582 -15.32559 -15.07973 -14.66304 -14.41108 -14.17173 -13.85763 -13.81508 -13.53444 -13.40497 -13.29960 -13.06239 -12.79243 -12.21411 -11.98637 -11.82014 -11.30138 -11.20255 -11.15107 -11.02986 -10.85470 -10.80511 -10.70881 -10.57587 -10.49820 -9.95420 -9.82857 -9.31167 -9.23762 -8.74793 -8.46377 -8.31723 -7.29981 -6.04115 -4.05668 0.97380 1.79116 1.83545 2.51288 2.80843 2.96789 3.31293 3.38851 3.42473 3.43743 3.72910 4.03114 4.31381 4.41351 4.71157 4.77060 4.80496 4.96710 5.05063 5.20853 5.26898 5.31107 5.36339 5.40666 5.50941 5.67747 5.85726 5.94430 6.06262 6.20717 6.24620 6.37888 6.41150 6.49205 6.57453 6.65275 6.84520 7.24710 7.29739 7.34234 7.68634 7.76958 7.91654 8.03587 8.14466 8.50065 8.56402 9.02035 9.58853 11.06816 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.002414 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.404704 B =11594.967610 C =12559.843796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.353 5.353 3 C 0.147 3.853 4 C -0.311 4.311 5 C 0.566 3.434 6 O -0.529 6.529 7 O -0.517 6.517 8 C 0.381 3.619 9 N -0.646 5.646 10 C 0.700 3.300 11 O -0.552 6.552 12 N -0.617 5.617 13 C 0.134 3.866 14 C 0.050 3.950 15 N -0.535 5.535 16 C 0.193 3.807 17 C -0.508 4.508 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.041 3.959 26 C 0.113 3.887 27 N -0.277 5.277 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.195 0.805 32 H 0.414 0.586 33 H 0.426 0.574 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.099 0.901 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.028 0.972 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.526 23.085 8.927 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.130 5.130 3 C -0.009 4.009 4 C -0.326 4.326 5 C 0.411 3.589 6 O -0.420 6.420 7 O -0.328 6.328 8 C 0.121 3.879 9 N -0.304 5.304 10 C 0.402 3.598 11 O -0.425 6.425 12 N -0.355 5.355 13 C 0.011 3.989 14 C -0.079 4.079 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.547 4.547 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.089 4.089 26 C -0.010 4.010 27 N -0.107 5.107 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.212 0.788 32 H 0.273 0.727 33 H 0.269 0.731 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.117 0.883 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.001 21.043 9.278 29.205 hybrid contribution 1.524 0.635 -0.849 1.857 sum -16.476 21.677 8.429 28.503 Atomic orbital electron populations 1.22059 0.72743 1.05303 1.04222 1.48378 1.07538 1.03728 1.53310 1.23171 0.89334 0.94309 0.94054 1.18861 0.91734 0.90596 1.31452 1.19527 0.87595 0.80245 0.71519 1.90844 1.27744 1.74919 1.48448 1.84522 1.42731 1.19227 1.86347 1.18756 0.87603 0.86717 0.94868 1.42456 1.07532 1.04427 1.75987 1.15854 0.85105 0.80378 0.78507 1.90993 1.22394 1.73847 1.55257 1.47431 1.04632 1.07529 1.75881 1.21910 1.01119 0.76455 0.99408 1.22464 0.88714 1.02001 0.94719 1.62088 1.08174 1.04149 1.51589 1.19734 0.91644 0.94953 0.86818 1.21187 1.29996 0.91490 1.11978 0.91681 1.24999 0.95551 0.98957 0.95131 1.69964 1.32213 1.35653 1.15946 0.86437 0.77808 0.85106 0.78048 1.19588 1.21141 1.21024 1.22378 1.00124 0.91003 0.95361 1.21887 0.81819 0.96823 1.00482 1.78183 0.98927 1.03457 1.30093 0.89862 0.88787 0.88392 0.78820 0.72692 0.73111 0.90775 0.89192 0.95652 0.88317 0.99094 0.95000 0.92952 0.95421 0.89854 0.90975 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.43 59.84 0.68 1.11 16 2 N -0.35 -3.28 3.97 -67.59 -0.27 -3.55 16 3 C 0.15 1.11 11.32 -16.56 -0.19 0.93 16 4 C -0.31 -3.44 6.14 -104.94 -0.64 -4.09 16 5 C 0.57 5.82 8.32 34.32 0.29 6.11 16 6 O -0.53 -6.82 15.99 -19.30 -0.31 -7.13 16 7 O -0.52 -3.27 13.26 -40.71 -0.54 -3.81 16 8 C 0.38 5.54 7.78 -154.46 -1.20 4.34 16 9 N -0.65 -9.87 5.33 -15.30 -0.08 -9.95 16 10 C 0.70 12.28 8.27 -86.92 -0.72 11.56 16 11 O -0.55 -11.21 14.55 5.28 0.08 -11.13 16 12 N -0.62 -10.27 3.00 -177.91 -0.53 -10.80 16 13 C 0.13 2.29 6.61 -3.37 -0.02 2.27 16 14 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 15 N -0.53 -11.35 4.62 -235.46 -1.09 -12.44 16 16 C 0.19 4.98 4.72 -4.97 -0.02 4.96 16 17 C -0.51 -14.07 8.41 -34.44 -0.29 -14.36 16 18 H 0.07 1.78 7.13 -52.49 -0.37 1.40 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 26 C 0.11 1.68 6.59 -3.60 -0.02 1.66 16 27 N -0.28 -4.11 10.73 31.62 0.34 -3.77 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.19 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.41 0.93 9.11 45.56 0.42 1.34 16 33 H 0.43 5.95 4.45 -40.82 -0.18 5.77 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.55 7.09 -51.93 -0.37 1.18 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 2.05 6.67 -51.93 -0.35 1.70 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 43 H 0.07 0.92 5.63 -51.93 -0.29 0.63 16 44 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -38.04 369.28 -8.32 -46.36 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.91 Total: 2.38 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: -2.28 Total: 17.61 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.90 Total: -66.40 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.77 Total: -22.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.04 -8.32 -46.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574211708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.089 kcal (2) G-P(sol) polarization free energy of solvation -38.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds