Wall clock time and date at job start Tue Mar 31 2020 20:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35504 * 116.99981 * 2 1 4 4 C 1.39648 * 120.49108 * 179.97438 * 3 2 1 5 5 C 1.39143 * 118.20509 * 180.02562 * 4 3 2 6 6 C 1.48452 * 120.51393 * 180.02562 * 5 4 3 7 7 O 1.21473 * 120.00111 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99548 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72340 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46898 * 109.46947 * 180.02562 * 10 9 8 12 12 C 1.46894 * 111.00387 * 66.04765 * 11 10 9 13 13 C 1.46906 * 110.99589 * 190.00154 * 11 10 9 14 14 C 1.50704 * 109.46950 * 170.00089 * 13 11 10 15 15 O 1.21292 * 120.00070 * 359.97438 * 14 13 11 16 16 N 1.34774 * 119.99609 * 179.97438 * 14 13 11 17 17 C 1.37101 * 119.99744 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00215 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99832 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99640 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47572 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46704 * 120.00418 * 21 19 17 24 24 H 1.48498 * 109.47199 * 240.00381 * 21 19 17 25 25 N 1.33278 * 118.96545 * 0.27695 * 5 4 3 26 26 C 1.31523 * 120.88467 * 359.43809 * 25 5 4 27 27 N 1.31892 * 121.99250 * 0.57935 * 26 25 5 28 28 H 1.08997 * 109.47565 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47080 * 300.00072 * 1 2 3 30 30 H 1.09003 * 109.47203 * 59.99887 * 1 2 3 31 31 H 1.08001 * 120.89659 * 0.04675 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 34 34 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 35 35 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 36 36 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 37 37 H 1.09006 * 109.47151 * 59.99589 * 12 11 10 38 38 H 1.09000 * 109.47496 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47031 * 299.99782 * 12 11 10 40 40 H 1.09007 * 109.46952 * 289.99615 * 13 11 10 41 41 H 1.08995 * 109.47632 * 49.99732 * 13 11 10 42 42 H 0.97000 * 120.00714 * 0.02562 * 16 14 13 43 43 H 0.97003 * 119.99431 * 179.97438 * 20 19 17 44 44 H 1.08007 * 119.00672 * 180.26689 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2924 0.0005 5 6 4.0198 2.5564 0.0011 6 6 5.4967 2.7064 0.0011 7 8 6.2073 1.7212 0.0002 8 7 6.0491 3.9358 0.0011 9 6 7.5066 4.0839 0.0072 10 6 7.8681 5.5706 0.0128 11 7 9.3296 5.7190 0.0184 12 6 9.9140 5.2220 -1.2343 13 6 9.7159 7.1152 0.2621 14 6 11.2014 7.1903 0.5048 15 8 11.8721 6.1801 0.4779 16 7 11.7845 8.3801 0.7517 17 6 13.1358 8.4483 0.9730 18 1 13.7331 7.5489 0.9491 19 6 13.7371 9.6750 1.2271 20 7 13.0104 10.7696 1.2556 21 14 15.5783 9.7681 1.5279 22 1 16.1636 8.4060 1.4417 23 1 16.2039 10.6410 0.5023 24 1 15.8314 10.3314 2.8784 25 7 3.2304 3.6302 0.0067 26 6 1.9211 3.5057 0.0006 27 7 1.3314 2.3259 0.0001 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.0480 0.4011 0.0002 32 1 5.4817 4.7225 0.0014 33 1 7.9166 3.6069 0.8975 34 1 7.9235 3.6120 -0.8825 35 1 7.4582 6.0475 -0.8774 36 1 7.4513 6.0425 0.9026 37 1 9.5085 5.7869 -2.0737 38 1 10.9967 5.3442 -1.2038 39 1 9.6705 4.1665 -1.3552 40 1 9.4588 7.7204 -0.6074 41 1 9.1854 7.4918 1.1365 42 1 11.2481 9.1879 0.7735 43 1 13.4302 11.6258 1.4334 44 1 1.3102 4.3964 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663184858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:06 Heat of formation + Delta-G solvation = -40.235591 kcal Electronic energy + Delta-G solvation = -27333.464272 eV Core-core repulsion = 23094.413970 eV Total energy + Delta-G solvation = -4239.050302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87898 -39.95941 -38.91796 -38.61175 -36.83749 -34.84983 -33.94480 -33.74096 -32.36810 -31.24910 -29.72758 -28.23277 -27.70448 -25.90974 -24.92755 -24.80008 -23.62336 -21.37766 -21.25859 -19.27309 -19.16986 -18.79875 -17.84899 -16.85502 -16.83435 -16.48109 -16.05531 -15.98047 -15.88970 -15.51939 -15.22266 -14.95979 -14.69273 -14.59007 -14.46983 -13.98671 -13.89557 -13.48599 -13.30918 -13.02941 -12.64405 -12.25836 -12.13315 -11.89917 -11.52905 -11.42558 -11.41930 -11.28430 -11.08637 -10.95644 -10.91535 -10.80055 -10.33422 -10.21991 -10.02062 -9.75260 -9.48452 -9.31653 -8.48088 -7.98735 -7.89060 -6.41498 -3.82077 -0.02597 0.44228 2.12831 2.35888 2.69742 3.16907 3.27655 3.31096 3.34852 3.41725 3.43213 3.90465 4.01366 4.19741 4.31145 4.39952 4.61179 4.71133 4.71434 4.82434 4.96387 5.01683 5.03149 5.11497 5.25063 5.38905 5.50067 5.63008 5.68277 5.79787 5.84912 5.92587 5.99434 6.06164 6.15862 6.27693 6.46406 6.55451 7.08011 7.20651 7.31132 7.39722 7.56085 7.77679 8.07100 8.62200 9.18840 9.54825 10.06611 10.76330 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.041074 B = 0.001507 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.539930 B =18579.857866 C =19018.625467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.365 3.635 4 C -0.183 4.183 5 C 0.161 3.839 6 C 0.570 3.430 7 O -0.518 6.518 8 N -0.701 5.701 9 C 0.119 3.881 10 C 0.044 3.956 11 N -0.515 5.515 12 C 0.017 3.983 13 C 0.047 3.953 14 C 0.444 3.556 15 O -0.576 6.576 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 N -0.520 5.520 26 C 0.337 3.663 27 N -0.565 5.565 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.167 0.833 32 H 0.412 0.588 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.016 0.984 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.760 -13.449 -3.975 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.177 3.823 4 C -0.208 4.208 5 C 0.016 3.984 6 C 0.353 3.647 7 O -0.392 6.392 8 N -0.353 5.353 9 C -0.004 4.004 10 C -0.085 4.085 11 N -0.239 5.239 12 C -0.130 4.130 13 C -0.084 4.084 14 C 0.229 3.771 15 O -0.460 6.460 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 N -0.241 5.241 26 C 0.049 3.951 27 N -0.296 5.296 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.185 0.815 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.034 0.966 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -26.915 -14.457 -3.570 30.759 hybrid contribution -0.016 1.009 -0.459 1.108 sum -26.931 -13.448 -4.029 30.370 Atomic orbital electron populations 1.23036 0.76051 1.03811 1.02987 1.86275 1.23830 1.23499 1.86370 1.20052 0.89235 0.85237 0.87789 1.21934 0.92764 1.00691 1.05369 1.21420 0.94941 0.88713 0.93297 1.17607 0.85230 0.84011 0.77893 1.90845 1.61320 1.38000 1.49050 1.45746 1.08656 1.08008 1.72910 1.21480 0.77899 0.97122 1.03935 1.22248 0.89810 0.94944 1.01497 1.61439 1.06514 1.19736 1.36224 1.22638 1.03410 0.99154 0.87840 1.21871 0.96814 0.88475 1.01253 1.19708 0.88353 0.84509 0.84536 1.90494 1.64639 1.34655 1.56229 1.41866 1.08918 1.07226 1.62099 1.19758 0.83135 0.94997 1.44869 0.87825 1.25254 1.00461 0.94800 0.97422 1.69621 1.36384 0.98645 1.49707 0.85806 0.82226 0.78540 0.77813 1.19197 1.20809 1.20764 1.68364 1.06737 1.32887 1.16118 1.24730 0.87935 0.93911 0.88513 1.68071 1.42023 0.99340 1.20192 0.87874 0.91706 0.91711 0.81513 0.75217 0.89694 0.90646 0.94331 0.90054 0.96569 0.88339 0.91829 0.93290 0.89258 0.77502 0.91952 0.77543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.41 101.05 1.05 1.21 16 2 O -0.30 -2.31 10.49 -18.21 -0.19 -2.50 16 3 C 0.37 3.17 7.54 -16.68 -0.13 3.04 16 4 C -0.18 -1.71 9.68 -38.72 -0.37 -2.08 16 5 C 0.16 1.58 6.79 -82.69 -0.56 1.02 16 6 C 0.57 6.59 7.83 -12.05 -0.09 6.49 16 7 O -0.52 -7.57 16.42 5.39 0.09 -7.48 16 8 N -0.70 -7.05 5.55 -61.05 -0.34 -7.39 16 9 C 0.12 1.38 5.60 -4.04 -0.02 1.36 16 10 C 0.04 0.51 5.07 -3.82 -0.02 0.49 16 11 N -0.51 -8.26 4.50 -244.36 -1.10 -9.36 16 12 C 0.02 0.27 8.96 60.06 0.54 0.81 16 13 C 0.05 0.81 5.45 -4.97 -0.03 0.79 16 14 C 0.44 10.30 7.47 -10.98 -0.08 10.22 16 15 O -0.58 -15.35 13.91 5.55 0.08 -15.27 16 16 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 21 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 N -0.52 -4.35 9.70 -11.20 -0.11 -4.46 16 26 C 0.34 2.27 12.27 -92.30 -1.13 1.14 16 27 N -0.57 -4.45 9.36 -14.64 -0.14 -4.58 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.28 8.12 -51.93 -0.42 -0.14 16 30 H 0.06 0.28 8.12 -51.93 -0.42 -0.15 16 31 H 0.17 1.50 7.73 -52.49 -0.41 1.09 16 32 H 0.41 3.35 7.86 -40.82 -0.32 3.02 16 33 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.08 0.93 6.55 -51.93 -0.34 0.59 16 35 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.08 0.86 7.93 -51.93 -0.41 0.44 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 39 H 0.06 0.90 6.47 -51.93 -0.34 0.57 16 40 H 0.05 0.77 8.12 -51.92 -0.42 0.34 16 41 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 42 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.21 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -33.75 380.01 -7.17 -40.92 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.74 Total: 9.66 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: -1.09 Total: 16.59 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -1.02 Total: -63.59 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.03 Total: -25.25 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.75 -7.17 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663184858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.684 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds