Wall clock time and date at job start Tue Mar 31 2020 20:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35504 * 116.99981 * 2 1 4 4 C 1.39648 * 120.49108 * 179.97438 * 3 2 1 5 5 C 1.39143 * 118.20509 * 180.02562 * 4 3 2 6 6 C 1.48452 * 120.51393 * 180.02562 * 5 4 3 7 7 O 1.21473 * 120.00111 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99548 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72340 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46898 * 109.46947 * 180.02562 * 10 9 8 12 12 C 1.46894 * 111.00387 * 66.04765 * 11 10 9 13 13 C 1.46906 * 110.99589 * 190.00154 * 11 10 9 14 14 C 1.50704 * 109.46950 * 170.00089 * 13 11 10 15 15 O 1.21292 * 120.00070 * 359.97438 * 14 13 11 16 16 N 1.34774 * 119.99609 * 179.97438 * 14 13 11 17 17 C 1.37101 * 119.99744 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00215 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99832 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99640 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47572 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46704 * 120.00418 * 21 19 17 24 24 H 1.48498 * 109.47199 * 240.00381 * 21 19 17 25 25 N 1.33278 * 118.96545 * 0.27695 * 5 4 3 26 26 C 1.31523 * 120.88467 * 359.43809 * 25 5 4 27 27 N 1.31892 * 121.99250 * 0.57935 * 26 25 5 28 28 H 1.08997 * 109.47565 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47080 * 300.00072 * 1 2 3 30 30 H 1.09003 * 109.47203 * 59.99887 * 1 2 3 31 31 H 1.08001 * 120.89659 * 0.04675 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 34 34 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 35 35 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 36 36 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 37 37 H 1.09006 * 109.47151 * 59.99589 * 12 11 10 38 38 H 1.09000 * 109.47496 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47031 * 299.99782 * 12 11 10 40 40 H 1.09007 * 109.46952 * 289.99615 * 13 11 10 41 41 H 1.08995 * 109.47632 * 49.99732 * 13 11 10 42 42 H 0.97000 * 120.00714 * 0.02562 * 16 14 13 43 43 H 0.97003 * 119.99431 * 179.97438 * 20 19 17 44 44 H 1.08007 * 119.00672 * 180.26689 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2924 0.0005 5 6 4.0198 2.5564 0.0011 6 6 5.4967 2.7064 0.0011 7 8 6.2073 1.7212 0.0002 8 7 6.0491 3.9358 0.0011 9 6 7.5066 4.0839 0.0072 10 6 7.8681 5.5706 0.0128 11 7 9.3296 5.7190 0.0184 12 6 9.9140 5.2220 -1.2343 13 6 9.7159 7.1152 0.2621 14 6 11.2014 7.1903 0.5048 15 8 11.8721 6.1801 0.4779 16 7 11.7845 8.3801 0.7517 17 6 13.1358 8.4483 0.9730 18 1 13.7331 7.5489 0.9491 19 6 13.7371 9.6750 1.2271 20 7 13.0104 10.7696 1.2556 21 14 15.5783 9.7681 1.5279 22 1 16.1636 8.4060 1.4417 23 1 16.2039 10.6410 0.5023 24 1 15.8314 10.3314 2.8784 25 7 3.2304 3.6302 0.0067 26 6 1.9211 3.5057 0.0006 27 7 1.3314 2.3259 0.0001 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.0480 0.4011 0.0002 32 1 5.4817 4.7225 0.0014 33 1 7.9166 3.6069 0.8975 34 1 7.9235 3.6120 -0.8825 35 1 7.4582 6.0475 -0.8774 36 1 7.4513 6.0425 0.9026 37 1 9.5085 5.7869 -2.0737 38 1 10.9967 5.3442 -1.2038 39 1 9.6705 4.1665 -1.3552 40 1 9.4588 7.7204 -0.6074 41 1 9.1854 7.4918 1.1365 42 1 11.2481 9.1879 0.7735 43 1 13.4302 11.6258 1.4334 44 1 1.3102 4.3964 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663184858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:03 Heat of formation + Delta-G solvation = -68.825522 kcal Electronic energy + Delta-G solvation = -27334.704025 eV Core-core repulsion = 23094.413970 eV Total energy + Delta-G solvation = -4240.290055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.51350 -40.83116 -40.31793 -39.47844 -38.18923 -36.07305 -35.61701 -34.52801 -33.25215 -32.98836 -30.82566 -29.15197 -28.63946 -27.13471 -26.27954 -25.40217 -24.83659 -22.35470 -22.19889 -20.95359 -19.99696 -19.83238 -19.43383 -17.82636 -17.57656 -17.42831 -17.22232 -16.93383 -16.65524 -16.53922 -16.40554 -16.21501 -15.85862 -15.66612 -15.47023 -15.13819 -15.02464 -14.98941 -14.49401 -14.33663 -13.75890 -13.44131 -13.02704 -13.00512 -12.94165 -12.72563 -12.56900 -12.53292 -12.37455 -12.15613 -12.08541 -12.03170 -11.72221 -11.57117 -11.44191 -10.69811 -10.37454 -10.26952 -10.22095 -9.96789 -9.22211 -8.44398 -5.92323 -0.73077 -0.16398 1.37871 1.43176 1.47458 1.54295 1.57182 1.95014 2.09200 2.31015 2.64796 2.66264 2.93839 2.97558 3.23032 3.44569 3.55042 3.74702 3.82442 4.02792 4.07660 4.27930 4.38443 4.38853 4.39151 4.44011 4.48667 4.55786 4.65656 4.66607 4.70342 4.84299 4.93438 4.99266 5.18647 5.23873 5.44129 5.50997 5.87006 5.91083 6.06899 6.17904 6.29349 6.64200 6.77731 6.94501 7.16562 7.60388 8.16815 8.73190 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.041074 B = 0.001507 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.539930 B =18579.857866 C =19018.625467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.308 6.308 3 C 0.363 3.637 4 C -0.195 4.195 5 C 0.154 3.846 6 C 0.569 3.431 7 O -0.556 6.556 8 N -0.687 5.687 9 C 0.126 3.874 10 C 0.052 3.948 11 N -0.538 5.538 12 C 0.023 3.977 13 C 0.060 3.940 14 C 0.440 3.560 15 O -0.616 6.616 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.272 1.272 25 N -0.522 5.522 26 C 0.341 3.659 27 N -0.566 5.566 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.424 0.576 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.082 -12.383 -4.117 32.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.174 3.826 4 C -0.220 4.220 5 C 0.010 3.990 6 C 0.353 3.647 7 O -0.433 6.433 8 N -0.339 5.339 9 C 0.003 3.997 10 C -0.076 4.076 11 N -0.263 5.263 12 C -0.125 4.125 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.502 6.502 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.197 1.197 25 N -0.243 5.243 26 C 0.053 3.947 27 N -0.297 5.297 28 H 0.145 0.855 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.262 0.738 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -29.294 -13.355 -3.716 32.409 hybrid contribution 0.581 0.613 -0.426 0.946 sum -28.713 -12.742 -4.142 31.686 Atomic orbital electron populations 1.23291 0.74316 1.05514 1.03214 1.86269 1.25579 1.23245 1.86052 1.20123 0.89088 0.85854 0.87519 1.21934 0.93351 1.00490 1.06178 1.21144 0.94070 0.89416 0.94378 1.17875 0.85974 0.83765 0.77094 1.90823 1.62416 1.39210 1.50880 1.45578 1.08109 1.08146 1.72065 1.21275 0.78655 0.97127 1.02681 1.22243 0.86960 0.94905 1.03500 1.61325 1.09400 1.19031 1.36547 1.22487 1.00869 1.00400 0.88734 1.21741 0.92079 0.89874 1.03372 1.20839 0.90939 0.83221 0.82285 1.90477 1.66500 1.35907 1.57286 1.41923 1.08250 1.08110 1.62930 1.19682 0.84608 0.94682 1.47115 0.90451 1.25979 1.04436 0.94122 0.96601 1.69672 1.37875 0.99001 1.49580 0.84907 0.77251 0.78155 0.78242 1.19941 1.19654 1.19682 1.68390 1.07389 1.32084 1.16471 1.25562 0.87640 0.94753 0.86708 1.68175 1.41881 0.99435 1.20199 0.85550 0.91462 0.91406 0.82074 0.73778 0.91620 0.91442 0.91942 0.88228 0.94622 0.92528 0.90627 0.90881 0.86685 0.76951 0.91372 0.73682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.41 113.37 1.18 1.41 16 2 O -0.31 -4.53 10.49 -88.06 -0.92 -5.46 16 3 C 0.36 5.97 7.54 84.91 0.64 6.61 16 4 C -0.19 -3.61 9.68 22.83 0.22 -3.39 16 5 C 0.15 2.91 6.79 41.87 0.28 3.20 16 6 C 0.57 12.97 7.83 86.97 0.68 13.65 16 7 O -0.56 -16.66 16.42 -3.63 -0.06 -16.72 16 8 N -0.69 -12.82 5.55 -465.38 -2.58 -15.40 16 9 C 0.13 2.79 5.60 86.38 0.48 3.27 16 10 C 0.05 1.07 5.07 86.30 0.44 1.50 16 11 N -0.54 -16.46 4.50 -927.03 -4.17 -20.63 16 12 C 0.02 0.72 8.96 127.69 1.14 1.86 16 13 C 0.06 1.97 5.45 85.56 0.47 2.43 16 14 C 0.44 20.59 7.47 87.66 0.66 21.24 16 15 O -0.62 -33.85 13.91 -3.07 -0.04 -33.89 16 16 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 17 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 18 H 0.08 4.71 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 20 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 21 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 N -0.52 -7.69 9.70 -189.35 -1.84 -9.53 16 26 C 0.34 3.70 12.27 180.94 2.22 5.92 16 27 N -0.57 -7.81 9.36 -313.01 -2.93 -10.74 16 28 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 30 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 31 H 0.16 3.06 7.73 -2.91 -0.02 3.03 16 32 H 0.42 5.84 7.86 -92.71 -0.73 5.11 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 1.61 6.55 -2.39 -0.02 1.60 16 35 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 36 H 0.10 1.73 7.93 -2.38 -0.02 1.71 16 37 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.06 2.26 5.82 -2.39 -0.01 2.25 16 39 H 0.08 2.12 6.47 -2.39 -0.02 2.11 16 40 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 41 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 42 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 43 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.25 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -75.12 380.01 -2.56 -77.68 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.40 Total: 29.73 kcal Atomic # 6 Polarization: 29.91 SS G_CDS: 9.69 Total: 39.61 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -12.86 Total: -135.96 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -1.03 Total: -56.07 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.12 -2.56 -77.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663184858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.858 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds