Wall clock time and date at job start Tue Mar 31 2020 20:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46893 * 111.00230 * 2 1 4 4 C 1.52997 * 109.47217 * 66.04709 * 3 2 1 5 5 N 1.46499 * 109.47551 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00195 * 179.97438 * 5 4 3 7 7 O 1.21573 * 119.99941 * 0.02562 * 6 5 4 8 8 C 1.47720 * 120.00116 * 180.27923 * 6 5 4 9 9 C 1.40939 * 125.97676 * 179.44336 * 8 6 5 10 10 C 1.36178 * 107.95140 * 179.71124 * 9 8 6 11 11 N 1.35803 * 107.30853 * 0.80182 * 10 9 8 12 12 N 1.31846 * 125.97255 * 359.74976 * 8 6 5 13 13 C 1.47422 * 108.06622 * 178.96279 * 11 10 9 14 14 C 1.54654 * 102.35671 * 344.73699 * 13 11 10 15 15 O 1.36119 * 140.87818 * 180.74622 * 10 9 8 16 16 C 1.46908 * 110.99664 * 236.04848 * 2 1 3 17 17 C 1.50701 * 109.46825 * 293.95466 * 16 2 1 18 18 O 1.21284 * 120.00452 * 359.97438 * 17 16 2 19 19 N 1.34773 * 119.99645 * 180.02562 * 17 16 2 20 20 C 1.37101 * 120.00181 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99434 * 0.02562 * 20 19 17 22 22 C 1.38944 * 119.99991 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99899 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00271 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46835 * 90.00037 * 24 22 20 26 26 H 1.48499 * 109.47227 * 209.99676 * 24 22 20 27 27 H 1.48498 * 109.47435 * 330.00029 * 24 22 20 28 28 H 1.08999 * 109.47255 * 59.99633 * 1 2 3 29 29 H 1.08997 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46687 * 299.99809 * 1 2 3 31 31 H 1.09007 * 109.47425 * 306.05253 * 3 2 1 32 32 H 1.08997 * 109.47527 * 186.04684 * 3 2 1 33 33 H 1.08998 * 109.47059 * 59.99997 * 4 3 2 34 34 H 1.09002 * 109.47542 * 300.00431 * 4 3 2 35 35 H 0.97000 * 120.00069 * 0.02562 * 5 4 3 36 36 H 1.08002 * 126.02380 * 359.87067 * 9 8 6 37 37 H 1.08996 * 110.83186 * 102.95889 * 13 11 10 38 38 H 1.09008 * 110.83201 * 226.52809 * 13 11 10 39 39 H 1.09002 * 110.85315 * 266.65848 * 14 13 11 40 40 H 1.08992 * 111.02871 * 143.10416 * 14 13 11 41 41 H 1.08997 * 109.46835 * 53.95449 * 16 2 1 42 42 H 1.08991 * 109.46663 * 173.95279 * 16 2 1 43 43 H 0.97007 * 120.00243 * 359.97438 * 19 17 16 44 44 H 0.96999 * 120.00560 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 7 2.1572 3.4248 1.3186 6 6 1.9560 4.2239 2.3851 7 8 1.3387 3.8097 3.3471 8 6 2.4806 5.6048 2.3829 9 6 2.3346 6.5476 3.4203 10 6 2.9626 7.6936 3.0373 11 7 3.4683 7.4815 1.7949 12 7 3.1624 6.1727 1.4077 13 6 4.1312 8.7219 1.3532 14 6 3.5813 9.7654 2.3535 15 8 3.2373 8.9484 3.4877 16 6 1.9955 -0.7660 -1.1377 17 6 1.6369 -2.2204 -0.9730 18 8 1.0054 -2.5833 -0.0031 19 7 2.0187 -3.1181 -1.9029 20 6 1.6930 -4.4413 -1.7528 21 1 1.1300 -4.7642 -0.8897 22 6 2.0863 -5.3667 -2.7118 23 7 1.7736 -6.6349 -2.5683 24 14 3.0582 -4.8077 -4.2059 25 1 4.5108 -4.8742 -3.9047 26 1 2.7503 -5.6942 -5.3568 27 1 2.6862 -3.4104 -4.5441 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0798 1.3443 -0.1082 33 1 2.0660 1.5014 2.1491 34 1 0.5473 2.0844 1.4266 35 1 2.6494 3.7555 0.5509 36 1 1.8182 6.3883 4.3554 37 1 5.2142 8.6348 1.4401 38 1 3.8422 8.9737 0.3327 39 1 2.6983 10.2614 1.9506 40 1 4.3469 10.4946 2.6184 41 1 1.5611 -0.3872 -2.0628 42 1 3.0797 -0.6611 -1.1757 43 1 2.5241 -2.8279 -2.6784 44 1 2.0484 -7.2810 -3.2375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663201226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:56 Heat of formation + Delta-G solvation = 23.267848 kcal Electronic energy + Delta-G solvation = -27532.488436 eV Core-core repulsion = 23296.191849 eV Total energy + Delta-G solvation = -4236.296586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.81973 -40.09368 -38.92092 -38.60140 -36.88532 -34.76276 -33.88557 -33.81741 -31.66676 -30.86279 -29.53636 -29.25031 -27.82690 -25.75934 -24.77981 -23.73876 -22.84200 -21.89423 -21.25120 -20.28029 -19.34128 -18.36487 -18.24448 -17.60048 -16.87008 -16.52656 -16.15094 -16.01603 -15.80165 -15.58336 -15.18256 -14.94335 -14.80927 -14.60336 -14.17263 -13.97168 -13.78356 -13.50758 -13.36173 -13.08916 -13.05309 -12.93666 -12.42187 -12.05078 -11.95141 -11.84300 -11.52710 -11.45033 -11.35734 -11.10772 -11.02872 -10.59199 -10.49647 -9.96303 -9.76224 -9.52768 -9.26034 -9.03507 -8.58504 -8.16867 -7.99437 -6.29537 -3.80917 0.83761 1.27210 1.62459 2.19488 2.83507 3.02797 3.05627 3.07453 3.15654 3.28977 3.74945 3.85326 3.90573 4.04950 4.11528 4.25164 4.39719 4.56435 4.70062 4.75143 4.76962 4.87369 5.01917 5.07398 5.22321 5.35734 5.40570 5.50538 5.61876 5.77539 5.81485 5.84219 5.88142 5.93073 5.98391 6.14958 6.30023 6.52561 6.86745 7.10086 7.23422 7.27290 7.59810 7.87823 8.16389 8.61772 8.97030 9.43998 9.85056 10.83620 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.001617 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.421203 B =17309.463342 C =18082.958935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.712 5.712 6 C 0.603 3.397 7 O -0.516 6.516 8 C 0.058 3.942 9 C -0.212 4.212 10 C 0.234 3.766 11 N -0.412 5.412 12 N -0.220 5.220 13 C 0.097 3.903 14 C 0.041 3.959 15 O -0.278 6.278 16 C 0.044 3.956 17 C 0.453 3.547 18 O -0.557 6.557 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.016 0.984 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.406 0.594 36 H 0.167 0.833 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.338 36.487 3.495 37.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.365 5.365 6 C 0.385 3.615 7 O -0.389 6.389 8 C -0.109 4.109 9 C -0.241 4.241 10 C 0.066 3.934 11 N -0.209 5.209 12 N -0.050 5.050 13 C -0.023 4.023 14 C -0.035 4.035 15 O -0.185 6.185 16 C -0.087 4.087 17 C 0.238 3.762 18 O -0.439 6.439 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.035 0.965 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.241 0.759 36 H 0.185 0.815 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.150 0.850 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.202 0.798 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.171 35.427 4.161 36.200 hybrid contribution 0.670 1.191 -1.905 2.344 sum 6.840 36.618 2.256 37.320 Atomic orbital electron populations 1.22659 0.86259 1.04878 0.99359 1.61435 1.09113 1.10504 1.42824 1.22252 1.00891 0.89655 0.95690 1.21436 0.99906 0.79951 0.98976 1.45771 1.57165 1.14305 1.19222 1.16688 0.79691 0.82028 0.83067 1.90861 1.40166 1.73817 1.34032 1.21945 1.00158 0.95768 0.93061 1.20086 1.10740 0.89396 1.03910 1.20769 0.97267 0.88187 0.87139 1.50657 1.44737 1.10479 1.15065 1.77636 1.19363 0.86925 1.21087 1.23283 0.99181 0.78343 1.01508 1.24481 1.02349 0.93315 0.83350 1.87166 1.84610 1.16417 1.30260 1.21903 1.00831 0.94055 0.91940 1.19607 0.85149 0.86397 0.85011 1.90536 1.42543 1.79890 1.30887 1.42208 1.51089 1.08365 1.21450 1.19434 1.33803 0.80296 1.09752 0.86231 1.25029 0.97898 0.95133 0.98086 1.69619 1.45678 1.01143 1.35722 0.86675 0.80911 0.78665 0.83139 1.19621 1.20231 1.19567 0.96503 0.88307 0.91564 0.94375 0.90115 0.89653 0.90620 0.75904 0.81515 0.87497 0.86790 0.88661 0.85015 0.93212 0.89147 0.79751 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.96 60.07 0.54 0.79 16 2 N -0.51 -8.05 4.50 -244.37 -1.10 -9.15 16 3 C 0.04 0.50 5.07 -3.83 -0.02 0.48 16 4 C 0.12 1.41 5.60 -4.04 -0.02 1.39 16 5 N -0.71 -7.46 5.55 -61.29 -0.34 -7.80 16 6 C 0.60 7.50 7.83 -12.39 -0.10 7.41 16 7 O -0.52 -8.05 16.90 5.30 0.09 -7.96 16 8 C 0.06 0.65 7.09 -82.96 -0.59 0.06 16 9 C -0.21 -2.22 10.60 -39.30 -0.42 -2.64 16 10 C 0.23 2.10 8.32 -16.53 -0.14 1.96 16 11 N -0.41 -3.36 5.01 -59.63 -0.30 -3.66 16 12 N -0.22 -2.26 12.39 33.32 0.41 -1.85 16 13 C 0.10 0.27 8.10 -2.67 -0.02 0.24 16 14 C 0.04 0.07 8.08 38.03 0.31 0.38 16 15 O -0.28 -1.88 11.19 -20.12 -0.23 -2.11 16 16 C 0.04 0.72 5.45 -4.97 -0.03 0.70 16 17 C 0.45 10.19 7.47 -10.99 -0.08 10.11 16 18 O -0.56 -14.77 13.91 5.55 0.08 -14.70 16 19 N -0.59 -13.99 5.09 -10.97 -0.06 -14.05 16 20 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.77 13.96 55.50 0.77 -24.99 16 24 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.01 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 1.90 5.82 -51.93 -0.30 1.60 16 30 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 31 H 0.04 0.39 8.12 -51.93 -0.42 -0.04 16 32 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.94 6.55 -51.93 -0.34 0.60 16 35 H 0.41 3.44 8.17 -40.82 -0.33 3.10 16 36 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.11 0.08 8.14 -51.92 -0.42 -0.34 16 39 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.13 -0.20 8.14 -51.93 -0.42 -0.62 16 41 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 42 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 43 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -37.29 372.68 -6.31 -43.59 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.73 Total: 9.30 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: -0.81 Total: 13.18 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.61 Total: -61.50 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.29 -6.31 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663201226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.861 kcal (2) G-P(sol) polarization free energy of solvation -37.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds