Wall clock time and date at job start Tue Mar 31 2020 20:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35297 * 116.99859 * 2 1 4 4 N 1.32465 * 119.02142 * 179.97438 * 3 2 1 5 5 C 1.32020 * 120.91617 * 179.97438 * 4 3 2 6 6 C 1.40056 * 118.98627 * 0.27864 * 5 4 3 7 7 C 1.47630 * 120.88159 * 179.72576 * 6 5 4 8 8 O 1.21579 * 119.99704 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99740 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99673 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46778 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.46829 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00182 * 66.04320 * 12 11 10 14 14 C 1.46902 * 110.99977 * 189.99738 * 12 11 10 15 15 C 1.50697 * 109.47112 * 170.00108 * 14 12 11 16 16 O 1.21294 * 120.00153 * 359.97438 * 15 14 12 17 17 N 1.34777 * 120.00283 * 179.97438 * 15 14 12 18 18 C 1.37089 * 120.00603 * 179.97438 * 17 15 14 19 19 H 1.08007 * 120.00143 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00308 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46920 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47085 * 119.99759 * 22 20 18 25 25 H 1.48496 * 109.46783 * 239.99641 * 22 20 18 26 26 C 1.40054 * 118.23266 * 359.45431 * 6 5 4 27 27 N 1.32020 * 118.99248 * 0.54473 * 26 6 5 28 28 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47631 * 300.00004 * 1 2 3 30 30 H 1.09005 * 109.47103 * 60.00762 * 1 2 3 31 31 H 1.08002 * 120.50391 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00507 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.46956 * 299.99672 * 10 9 7 34 34 H 1.08993 * 109.47045 * 59.99986 * 10 9 7 35 35 H 1.09000 * 109.46762 * 299.99365 * 11 10 9 36 36 H 1.08994 * 109.47261 * 59.99637 * 11 10 9 37 37 H 1.08995 * 109.47304 * 59.99893 * 13 12 11 38 38 H 1.09001 * 109.46980 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.47107 * 299.99756 * 13 12 11 40 40 H 1.09003 * 109.47039 * 289.99498 * 14 12 11 41 41 H 1.08994 * 109.47092 * 50.00155 * 14 12 11 42 42 H 0.97001 * 119.99345 * 0.02562 * 17 15 14 43 43 H 0.97001 * 120.00344 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.50490 * 180.23724 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3670 1.2523 0.0005 5 6 4.0049 2.4081 0.0000 6 6 3.2602 3.5943 0.0049 7 6 3.9304 4.9097 0.0106 8 8 5.1445 4.9733 0.0116 9 7 3.1963 6.0400 0.0148 10 6 3.8614 7.3454 0.0199 11 6 2.8076 8.4546 0.0245 12 7 3.4744 9.7634 0.0302 13 6 4.2098 9.9851 -1.2220 14 6 2.5100 10.8446 0.2728 15 6 3.2513 12.1339 0.5158 16 8 4.4639 12.1505 0.4900 17 7 2.5670 13.2687 0.7619 18 6 3.2414 14.4415 0.9834 19 1 4.3211 14.4562 0.9612 20 6 2.5359 15.6113 1.2376 21 7 1.2222 15.5935 1.2652 22 14 3.4549 17.2096 1.5388 23 1 4.9168 16.9635 1.4539 24 1 3.0601 18.2084 0.5133 25 1 3.1181 17.7272 2.8893 26 6 1.8629 3.4994 -0.0016 27 7 1.3027 2.3039 -0.0011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 5.0845 2.4385 0.0009 32 1 2.2277 5.9892 0.0143 33 1 4.4839 7.4324 0.9104 34 1 4.4843 7.4392 -0.8696 35 1 2.1848 8.3676 -0.8658 36 1 2.1849 8.3605 0.9141 37 1 3.5160 9.9501 -2.0619 38 1 4.6943 10.9611 -1.1909 39 1 4.9652 9.2086 -1.3421 40 1 1.8627 10.9561 -0.5971 41 1 1.9054 10.6028 1.1469 42 1 1.5974 13.2554 0.7829 43 1 0.7297 16.4102 1.4422 44 1 1.2529 4.3907 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663307861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:26 Heat of formation + Delta-G solvation = -34.105931 kcal Electronic energy + Delta-G solvation = -27368.822513 eV Core-core repulsion = 23130.038013 eV Total energy + Delta-G solvation = -4238.784500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94089 -40.00994 -38.81884 -38.56413 -36.86339 -35.06106 -34.37756 -33.83824 -32.35987 -31.27600 -29.60171 -28.20591 -27.70919 -25.62031 -25.31565 -24.70676 -23.64103 -21.41560 -21.19160 -19.45253 -19.20703 -18.66011 -18.17120 -17.86516 -17.04137 -16.36468 -16.07947 -15.90661 -15.63952 -15.23984 -15.10708 -14.98860 -14.66478 -14.47941 -14.24560 -14.01332 -13.93554 -13.53951 -13.36292 -13.06188 -12.59731 -12.41780 -12.17425 -11.97406 -11.91107 -11.58548 -11.55131 -11.45882 -11.32170 -11.12311 -10.98189 -10.37981 -10.35503 -10.24394 -9.87597 -9.71993 -9.51192 -9.34474 -8.52127 -8.02247 -7.93005 -6.44163 -3.84858 -0.03775 0.40791 1.92812 2.41535 2.62513 3.14928 3.24709 3.25925 3.28969 3.33198 3.81197 3.87035 3.96853 4.04200 4.20353 4.26353 4.40056 4.64293 4.69915 4.75872 4.90906 4.93226 5.05422 5.07272 5.21861 5.31330 5.42081 5.58079 5.63710 5.75163 5.80620 5.87587 5.94697 6.01435 6.05038 6.23999 6.43057 6.51821 7.02053 7.15765 7.26772 7.37680 7.53508 7.77347 8.04172 8.59174 9.16102 9.51728 10.03413 10.73601 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.030498 B = 0.001547 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.879622 B =18092.023096 C =18790.989037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.284 6.284 3 C 0.517 3.483 4 N -0.525 5.525 5 C 0.252 3.748 6 C -0.283 4.283 7 C 0.574 3.426 8 O -0.527 6.527 9 N -0.722 5.722 10 C 0.122 3.878 11 C 0.043 3.957 12 N -0.515 5.515 13 C 0.017 3.983 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.225 3.775 27 N -0.569 5.569 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.193 0.807 32 H 0.397 0.603 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.016 0.984 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 -27.206 -3.993 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.184 6.184 3 C 0.216 3.784 4 N -0.250 5.250 5 C 0.084 3.916 6 C -0.291 4.291 7 C 0.359 3.641 8 O -0.404 6.404 9 N -0.374 5.374 10 C -0.002 4.002 11 C -0.086 4.086 12 N -0.239 5.239 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.228 3.772 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.058 3.942 27 N -0.299 5.299 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.210 0.790 32 H 0.232 0.768 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.034 0.966 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.726 -28.223 -3.590 28.840 hybrid contribution -1.358 1.749 -0.457 2.261 sum -6.084 -26.474 -4.047 27.464 Atomic orbital electron populations 1.23108 0.75003 1.04059 1.03245 1.86094 1.23932 1.22492 1.85898 1.21018 0.86363 0.84918 0.86122 1.67775 1.07257 1.29921 1.20018 1.23440 1.01387 0.84122 0.82610 1.21602 0.96154 0.96803 1.14554 1.17532 0.86799 0.82947 0.76782 1.90842 1.13077 1.87099 1.49371 1.45799 1.10123 1.06117 1.75404 1.21421 0.95343 0.79440 1.03958 1.22261 0.95332 0.89711 1.01280 1.61440 1.26469 0.99668 1.36305 1.22638 0.97598 1.05017 0.87786 1.21869 0.93666 0.91671 1.01203 1.19699 0.88361 0.84499 0.84611 1.90498 1.13671 1.85600 1.56234 1.41865 1.09175 1.06964 1.62072 1.19758 0.93532 0.84608 1.44897 0.87808 1.25258 0.95587 0.99699 0.97382 1.69616 1.05681 1.29378 1.49675 0.85802 0.79717 0.81023 0.77828 1.19185 1.20789 1.20756 1.23202 0.91339 0.94741 0.84948 1.68092 1.41001 0.99024 1.21735 0.87466 0.91475 0.91489 0.79043 0.76832 0.89770 0.90716 0.94468 0.90178 0.96577 0.88321 0.91791 0.93317 0.89294 0.77518 0.91932 0.80643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.35 101.05 1.05 1.24 16 2 O -0.28 -2.46 10.55 -17.58 -0.19 -2.65 16 3 C 0.52 4.92 8.48 -91.00 -0.77 4.15 16 4 N -0.53 -5.31 10.45 -14.39 -0.15 -5.46 16 5 C 0.25 2.17 10.87 -16.79 -0.18 1.99 16 6 C -0.28 -2.24 5.90 -104.70 -0.62 -2.86 16 7 C 0.57 5.56 7.78 -12.43 -0.10 5.47 16 8 O -0.53 -7.12 16.44 5.30 0.09 -7.03 16 9 N -0.72 -5.64 5.51 -61.32 -0.34 -5.98 16 10 C 0.12 1.26 5.60 -4.04 -0.02 1.24 16 11 C 0.04 0.45 5.07 -3.83 -0.02 0.43 16 12 N -0.51 -7.87 4.50 -244.38 -1.10 -8.97 16 13 C 0.02 0.26 8.96 60.06 0.54 0.80 16 14 C 0.05 0.78 5.45 -4.98 -0.03 0.76 16 15 C 0.44 10.08 7.47 -10.99 -0.08 10.00 16 16 O -0.58 -15.11 13.91 5.54 0.08 -15.03 16 17 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 18 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 22 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.22 1.42 10.81 -16.79 -0.18 1.24 16 27 N -0.57 -4.56 9.19 -14.39 -0.13 -4.69 16 28 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.07 0.28 8.09 -51.93 -0.42 -0.13 16 31 H 0.19 1.39 7.74 -52.49 -0.41 0.98 16 32 H 0.40 1.79 6.60 -40.82 -0.27 1.52 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 35 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 39 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 40 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 42 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 43 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.18 0.46 6.53 -52.48 -0.34 0.11 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -35.01 377.46 -6.67 -41.68 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.60 Total: 7.40 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: -0.66 Total: 16.64 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -1.05 Total: -62.43 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.02 Total: -24.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.01 -6.67 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663307861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.578 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds