Wall clock time and date at job start Tue Mar 31 2020 20:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35297 * 116.99859 * 2 1 4 4 N 1.32465 * 119.02142 * 179.97438 * 3 2 1 5 5 C 1.32020 * 120.91617 * 179.97438 * 4 3 2 6 6 C 1.40056 * 118.98627 * 0.27864 * 5 4 3 7 7 C 1.47630 * 120.88159 * 179.72576 * 6 5 4 8 8 O 1.21579 * 119.99704 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99740 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99673 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46778 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.46829 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00182 * 66.04320 * 12 11 10 14 14 C 1.46902 * 110.99977 * 189.99738 * 12 11 10 15 15 C 1.50697 * 109.47112 * 170.00108 * 14 12 11 16 16 O 1.21294 * 120.00153 * 359.97438 * 15 14 12 17 17 N 1.34777 * 120.00283 * 179.97438 * 15 14 12 18 18 C 1.37089 * 120.00603 * 179.97438 * 17 15 14 19 19 H 1.08007 * 120.00143 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00308 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46920 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47085 * 119.99759 * 22 20 18 25 25 H 1.48496 * 109.46783 * 239.99641 * 22 20 18 26 26 C 1.40054 * 118.23266 * 359.45431 * 6 5 4 27 27 N 1.32020 * 118.99248 * 0.54473 * 26 6 5 28 28 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47631 * 300.00004 * 1 2 3 30 30 H 1.09005 * 109.47103 * 60.00762 * 1 2 3 31 31 H 1.08002 * 120.50391 * 179.97438 * 5 4 3 32 32 H 0.96997 * 120.00507 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.46956 * 299.99672 * 10 9 7 34 34 H 1.08993 * 109.47045 * 59.99986 * 10 9 7 35 35 H 1.09000 * 109.46762 * 299.99365 * 11 10 9 36 36 H 1.08994 * 109.47261 * 59.99637 * 11 10 9 37 37 H 1.08995 * 109.47304 * 59.99893 * 13 12 11 38 38 H 1.09001 * 109.46980 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.47107 * 299.99756 * 13 12 11 40 40 H 1.09003 * 109.47039 * 289.99498 * 14 12 11 41 41 H 1.08994 * 109.47092 * 50.00155 * 14 12 11 42 42 H 0.97001 * 119.99345 * 0.02562 * 17 15 14 43 43 H 0.97001 * 120.00344 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.50490 * 180.23724 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 3.3670 1.2523 0.0005 5 6 4.0049 2.4081 0.0000 6 6 3.2602 3.5943 0.0049 7 6 3.9304 4.9097 0.0106 8 8 5.1445 4.9733 0.0116 9 7 3.1963 6.0400 0.0148 10 6 3.8614 7.3454 0.0199 11 6 2.8076 8.4546 0.0245 12 7 3.4744 9.7634 0.0302 13 6 4.2098 9.9851 -1.2220 14 6 2.5100 10.8446 0.2728 15 6 3.2513 12.1339 0.5158 16 8 4.4639 12.1505 0.4900 17 7 2.5670 13.2687 0.7619 18 6 3.2414 14.4415 0.9834 19 1 4.3211 14.4562 0.9612 20 6 2.5359 15.6113 1.2376 21 7 1.2222 15.5935 1.2652 22 14 3.4549 17.2096 1.5388 23 1 4.9168 16.9635 1.4539 24 1 3.0601 18.2084 0.5133 25 1 3.1181 17.7272 2.8893 26 6 1.8629 3.4994 -0.0016 27 7 1.3027 2.3039 -0.0011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 5.0845 2.4385 0.0009 32 1 2.2277 5.9892 0.0143 33 1 4.4839 7.4324 0.9104 34 1 4.4843 7.4392 -0.8696 35 1 2.1848 8.3676 -0.8658 36 1 2.1849 8.3605 0.9141 37 1 3.5160 9.9501 -2.0619 38 1 4.6943 10.9611 -1.1909 39 1 4.9652 9.2086 -1.3421 40 1 1.8627 10.9561 -0.5971 41 1 1.9054 10.6028 1.1469 42 1 1.5974 13.2554 0.7829 43 1 0.7297 16.4102 1.4422 44 1 1.2529 4.3907 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663307861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:25 Heat of formation + Delta-G solvation = -66.016941 kcal Electronic energy + Delta-G solvation = -27370.206279 eV Core-core repulsion = 23130.038013 eV Total energy + Delta-G solvation = -4240.168265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.55687 -40.78634 -40.30276 -39.29797 -38.13378 -36.07901 -35.67456 -35.01888 -33.25640 -33.02555 -30.58206 -29.11168 -28.56936 -27.02268 -25.99123 -25.76868 -24.70788 -22.33804 -22.05852 -20.93853 -20.00370 -19.83019 -19.30462 -18.87538 -17.72056 -17.61287 -17.16317 -16.87410 -16.55614 -16.29514 -16.19434 -16.09687 -15.60610 -15.54175 -15.47121 -15.00417 -14.92393 -14.74525 -14.45064 -14.27517 -13.74791 -13.43623 -13.12022 -13.02299 -12.93473 -12.89328 -12.55170 -12.51573 -12.42758 -12.37061 -12.18831 -12.12535 -12.06018 -11.44051 -11.20663 -10.49071 -10.40557 -10.25491 -10.06609 -9.96424 -9.19445 -8.44360 -5.92155 -0.67324 -0.16380 1.37902 1.39733 1.43475 1.57008 1.68510 1.86361 2.09973 2.31547 2.60574 2.75983 2.91118 3.23241 3.26691 3.45841 3.48653 3.62962 3.78686 3.93044 4.12378 4.29202 4.34401 4.38265 4.40826 4.51408 4.52271 4.57113 4.67764 4.68857 4.69649 4.86256 4.90475 5.00299 5.25560 5.28627 5.43119 5.44310 5.88059 5.88666 6.08062 6.21547 6.40629 6.64586 6.76819 7.08628 7.16986 7.61013 8.17611 8.73144 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.030498 B = 0.001547 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.879622 B =18092.023096 C =18790.989037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.301 6.301 3 C 0.506 3.494 4 N -0.552 5.552 5 C 0.246 3.754 6 C -0.284 4.284 7 C 0.578 3.422 8 O -0.571 6.571 9 N -0.704 5.704 10 C 0.130 3.870 11 C 0.050 3.950 12 N -0.540 5.540 13 C 0.023 3.977 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.238 3.762 27 N -0.570 5.570 28 H 0.131 0.869 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.417 0.583 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 -27.808 -4.144 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.206 3.794 4 N -0.278 5.278 5 C 0.080 3.920 6 C -0.293 4.293 7 C 0.365 3.635 8 O -0.451 6.451 9 N -0.357 5.357 10 C 0.005 3.995 11 C -0.078 4.078 12 N -0.265 5.265 13 C -0.125 4.125 14 C -0.070 4.070 15 C 0.227 3.773 16 O -0.502 6.502 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.197 1.197 26 C 0.071 3.929 27 N -0.299 5.299 28 H 0.149 0.851 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.213 0.787 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.231 0.769 43 H 0.086 0.914 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.236 -28.850 -3.744 29.978 hybrid contribution -0.613 1.837 -0.423 1.983 sum -7.849 -27.013 -4.167 28.437 Atomic orbital electron populations 1.23382 0.73068 1.05823 1.03544 1.86082 1.25911 1.22528 1.85658 1.21251 0.86448 0.85658 0.86081 1.67757 1.08039 1.30651 1.21329 1.23565 1.01813 0.84300 0.82368 1.21412 0.96881 0.95445 1.15555 1.17710 0.86260 0.83698 0.75871 1.90830 1.15102 1.87683 1.51528 1.45535 1.11045 1.04710 1.74381 1.21168 0.95328 0.80583 1.02374 1.22285 0.95204 0.86686 1.03625 1.61316 1.27301 1.01295 1.36541 1.22474 0.98299 1.02882 0.88802 1.21734 0.93248 0.88632 1.03387 1.20891 0.88244 0.85984 0.82224 1.90482 1.15904 1.86585 1.57264 1.41927 1.09332 1.07037 1.62989 1.19672 0.92745 0.86572 1.47067 0.90488 1.25967 0.96427 1.02109 0.96637 1.69665 1.06426 1.30398 1.49632 0.84915 0.78042 0.77425 0.78229 1.19969 1.19676 1.19717 1.23828 0.90893 0.95493 0.82664 1.68213 1.40567 0.99105 1.22031 0.85084 0.91148 0.91096 0.78731 0.74461 0.92076 0.91872 0.91697 0.88007 0.94579 0.92765 0.90655 0.90866 0.86588 0.76945 0.91384 0.76546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.35 113.37 1.17 1.45 16 2 O -0.30 -4.98 10.55 -85.83 -0.91 -5.89 16 3 C 0.51 9.18 8.48 180.48 1.53 10.71 16 4 N -0.55 -11.07 10.45 -312.41 -3.26 -14.34 16 5 C 0.25 4.19 10.87 85.11 0.93 5.11 16 6 C -0.28 -4.05 5.90 -19.92 -0.12 -4.17 16 7 C 0.58 10.35 7.78 86.72 0.67 11.02 16 8 O -0.57 -15.40 16.44 -3.96 -0.07 -15.47 16 9 N -0.70 -8.97 5.51 -466.17 -2.57 -11.54 16 10 C 0.13 2.42 5.60 86.38 0.48 2.90 16 11 C 0.05 0.86 5.07 86.30 0.44 1.29 16 12 N -0.54 -15.40 4.50 -927.09 -4.17 -19.57 16 13 C 0.02 0.69 8.96 127.69 1.14 1.84 16 14 C 0.06 1.88 5.45 85.56 0.47 2.34 16 15 C 0.44 20.04 7.47 87.66 0.66 20.69 16 16 O -0.62 -33.30 13.91 -3.07 -0.04 -33.34 16 17 N -0.58 -28.56 5.29 -306.99 -1.62 -30.19 16 18 C -0.33 -18.50 9.68 84.04 0.81 -17.69 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.64 13.05 21.66 0.28 -48.36 16 22 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.24 2.31 10.81 85.11 0.92 3.22 16 27 N -0.57 -7.90 9.19 -312.41 -2.87 -10.77 16 28 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.07 0.48 8.09 -2.38 -0.02 0.46 16 31 H 0.20 2.95 7.74 -2.91 -0.02 2.93 16 32 H 0.42 1.87 6.60 -92.71 -0.61 1.26 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.35 6.55 -2.39 -0.02 1.34 16 35 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 36 H 0.10 1.37 7.93 -2.39 -0.02 1.35 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 2.11 5.82 -2.39 -0.01 2.10 16 39 H 0.07 2.01 6.47 -2.39 -0.02 1.99 16 40 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 41 H 0.12 2.98 7.93 -2.39 -0.02 2.96 16 42 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 43 H 0.28 13.69 8.31 -92.71 -0.77 12.91 16 44 H 0.22 0.07 6.53 -2.91 -0.02 0.05 16 Total: -1.00 -79.16 377.46 -3.90 -83.06 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.27 Total: 23.25 kcal Atomic # 6 Polarization: 29.00 SS G_CDS: 9.57 Total: 38.58 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -14.21 Total: -134.76 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -1.01 Total: -54.70 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -79.16 -3.90 -83.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663307861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.046 kcal (2) G-P(sol) polarization free energy of solvation -79.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds