Wall clock time and date at job start Tue Mar 31 2020 20:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35727 * 117.00186 * 2 1 4 4 C 1.39443 * 120.81300 * 180.02562 * 3 2 1 5 5 N 1.31957 * 119.09215 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.82825 * 359.97438 * 5 4 3 7 7 C 1.48297 * 119.10741 * 180.02562 * 6 5 4 8 8 O 1.21502 * 120.00256 * 352.78650 * 7 6 5 9 9 N 1.34778 * 119.99881 * 172.78781 * 7 6 5 10 10 C 1.46497 * 119.99986 * 354.14479 * 9 7 6 11 11 C 1.46499 * 119.99950 * 174.41789 * 9 7 6 12 12 C 1.53000 * 109.46889 * 90.00217 * 11 9 7 13 13 N 1.46899 * 109.47140 * 179.97438 * 12 11 9 14 14 C 1.46902 * 110.99775 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47062 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99883 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00417 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00550 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99172 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00004 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99565 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00389 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47151 * 89.99706 * 22 20 18 24 24 H 1.48500 * 109.47099 * 209.99963 * 22 20 18 25 25 H 1.48502 * 109.46846 * 329.99623 * 22 20 18 26 26 N 1.32534 * 121.78002 * 0.28698 * 6 5 4 27 27 C 1.31962 * 120.83607 * 359.43535 * 26 6 5 28 28 H 1.09000 * 109.47267 * 299.99814 * 1 2 3 29 29 H 1.09000 * 109.47227 * 60.00032 * 1 2 3 30 30 H 1.09002 * 109.47721 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.45844 * 359.97438 * 4 3 2 32 32 H 1.09007 * 109.47382 * 85.10254 * 10 9 7 33 33 H 1.08998 * 109.47636 * 205.10334 * 10 9 7 34 34 H 1.08999 * 109.47542 * 325.10474 * 10 9 7 35 35 H 1.09001 * 109.46933 * 209.99935 * 11 9 7 36 36 H 1.09000 * 109.47442 * 330.00002 * 11 9 7 37 37 H 1.09000 * 109.46958 * 300.00148 * 12 11 9 38 38 H 1.09000 * 109.47254 * 59.99670 * 12 11 9 39 39 H 1.00893 * 111.00137 * 56.04788 * 13 12 11 40 40 H 1.09001 * 109.47377 * 300.00064 * 14 13 12 41 41 H 1.08998 * 109.47583 * 60.00086 * 14 13 12 42 42 H 0.97008 * 119.99685 * 0.02562 * 17 15 14 43 43 H 0.96999 * 119.99955 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.45618 * 180.27951 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4365 1.3020 -0.0005 5 7 4.0000 2.4952 0.0000 6 6 3.2610 3.5954 0.0005 7 6 3.9343 4.9167 0.0005 8 8 5.1402 4.9841 0.1322 9 7 3.2084 6.0429 -0.1455 10 6 1.7743 5.9580 -0.4322 11 6 3.8547 7.3519 -0.0234 12 6 4.3569 7.8028 -1.3966 13 7 5.0044 9.1156 -1.2743 14 6 5.5007 9.5811 -2.5763 15 6 6.1576 10.9273 -2.4114 16 8 6.2071 11.4481 -1.3170 17 7 6.6893 11.5532 -3.4800 18 6 7.2864 12.7782 -3.3302 19 1 7.3311 13.2414 -2.3556 20 6 7.8350 13.4231 -4.4319 21 7 8.4078 14.5970 -4.2880 22 14 7.7582 12.6215 -6.1174 23 1 6.5107 13.0377 -6.8070 24 1 8.9330 13.0452 -6.9209 25 1 7.7700 11.1445 -5.9640 26 7 1.9365 3.5466 0.0062 27 6 1.3023 2.3894 0.0004 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0446 0.4095 -0.0005 32 1 1.2227 5.8501 0.5018 33 1 1.4512 6.8656 -0.9421 34 1 1.5816 5.0951 -1.0696 35 1 3.1361 8.0779 0.3570 36 1 4.6964 7.2788 0.6653 37 1 5.0754 7.0768 -1.7769 38 1 3.5152 7.8759 -2.0852 39 1 5.7477 9.0901 -0.5925 40 1 6.2277 8.8675 -2.9643 41 1 4.6673 9.6661 -3.2736 42 1 6.6487 11.1373 -4.3555 43 1 8.7904 15.0475 -5.0572 44 1 0.2228 2.3568 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664059629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:47 Heat of formation + Delta-G solvation = -16.852356 kcal Electronic energy + Delta-G solvation = -27658.675993 eV Core-core repulsion = 23420.639664 eV Total energy + Delta-G solvation = -4238.036329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.158 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.07691 -40.11201 -39.00024 -38.41014 -36.50406 -35.24287 -34.30838 -33.81479 -32.01710 -31.61900 -29.91967 -28.51167 -27.12638 -26.41959 -25.24603 -24.72075 -23.57881 -22.26131 -20.59089 -19.33416 -18.94953 -18.81379 -18.30230 -17.94574 -16.92334 -16.44128 -16.36230 -15.82287 -15.73801 -15.51849 -15.29271 -14.88578 -14.54788 -14.34982 -14.33498 -13.88912 -13.64418 -13.42533 -13.22943 -13.18961 -12.98916 -12.53032 -12.40720 -12.37346 -12.22916 -11.89371 -11.80818 -11.61898 -11.44494 -11.18521 -11.02499 -10.55915 -10.32934 -9.93821 -9.75120 -9.53185 -9.43136 -8.95986 -8.53370 -8.15843 -8.10845 -6.27234 -3.78443 -0.06904 0.33856 2.17863 2.23735 2.42542 3.06410 3.10196 3.18093 3.24740 3.35860 3.48304 3.68678 3.79051 3.99316 4.13685 4.26373 4.32098 4.35500 4.41255 4.73760 4.86411 4.95567 4.99879 5.06239 5.09766 5.26694 5.26915 5.43056 5.48484 5.66266 5.71444 5.78724 5.85354 5.90538 5.98591 6.01153 6.24330 6.35583 6.94540 7.09807 7.29098 7.59819 7.62624 7.82163 8.18779 8.64054 8.99071 9.46677 9.87231 10.85965 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.001667 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.815847 B =16788.853888 C =17036.220670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.298 6.298 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.426 5.426 6 C 0.242 3.758 7 C 0.583 3.417 8 O -0.501 6.501 9 N -0.595 5.595 10 C 0.088 3.912 11 C 0.119 3.881 12 C 0.044 3.956 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.451 3.549 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.447 5.447 27 C 0.057 3.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.185 0.815 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.353 0.647 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.249 -32.590 5.810 39.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.207 6.207 3 C -0.006 4.006 4 C -0.046 4.046 5 N -0.140 5.140 6 C -0.027 4.027 7 C 0.366 3.634 8 O -0.373 6.373 9 N -0.328 5.328 10 C -0.054 4.054 11 C -0.003 4.003 12 C -0.086 4.086 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.237 3.763 16 O -0.446 6.446 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 N -0.165 5.165 27 C -0.111 4.111 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.202 0.798 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.173 0.827 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.083 0.917 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.479 -30.934 6.506 37.665 hybrid contribution -0.100 -1.912 -1.688 2.553 sum -20.579 -32.846 4.818 39.059 Atomic orbital electron populations 1.23286 0.77097 1.05266 1.02019 1.86106 1.22391 1.24873 1.87362 1.21259 0.95265 0.86953 0.97142 1.22938 0.89343 0.96325 0.95956 1.68295 1.39747 0.97557 1.08428 1.22719 0.86144 0.94237 0.99566 1.17182 0.86005 0.81839 0.78371 1.90851 1.12846 1.85700 1.47904 1.47600 1.10321 1.05284 1.69632 1.22129 0.78879 1.02624 1.01807 1.21518 0.99195 0.81890 0.97721 1.22275 0.99010 0.90079 0.97259 1.60022 1.36259 1.24954 1.08674 1.21691 0.98931 0.95682 0.92033 1.19699 0.83948 0.87318 0.85361 1.90565 1.61163 1.67372 1.25456 1.42203 1.53077 1.19491 1.08307 1.19443 1.32324 0.92876 0.98677 0.86255 1.25031 0.97038 0.95899 0.98187 1.69625 1.37446 1.13916 1.31228 0.86668 0.78823 0.79358 0.84527 1.19627 1.20206 1.19518 1.68739 1.10093 1.27824 1.09798 1.23592 1.01549 0.86846 0.99095 0.91862 0.91860 0.87166 0.79793 0.91936 0.91393 0.89708 0.88657 0.89507 0.94840 0.90975 0.82750 0.93647 0.89483 0.79692 0.91654 0.80472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.84 101.05 0.99 1.01 16 2 O -0.30 -1.31 10.51 -18.89 -0.20 -1.51 16 3 C 0.05 0.26 6.75 -38.68 -0.26 0.00 16 4 C 0.12 0.93 11.27 -17.05 -0.19 0.74 16 5 N -0.43 -4.80 10.12 -11.03 -0.11 -4.91 16 6 C 0.24 2.72 7.40 -157.05 -1.16 1.56 16 7 C 0.58 7.72 7.68 -12.12 -0.09 7.63 16 8 O -0.50 -8.44 16.51 5.36 0.09 -8.35 16 9 N -0.59 -6.48 2.87 -182.52 -0.52 -7.01 16 10 C 0.09 0.68 9.10 59.85 0.54 1.22 16 11 C 0.12 1.38 5.60 -4.04 -0.02 1.36 16 12 C 0.04 0.58 6.01 -3.82 -0.02 0.56 16 13 N -0.67 -10.83 6.13 -115.05 -0.70 -11.53 16 14 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 15 C 0.45 10.57 7.82 -10.98 -0.09 10.48 16 16 O -0.56 -15.51 15.78 5.54 0.09 -15.42 16 17 N -0.59 -14.48 5.09 -10.96 -0.06 -14.53 16 18 C -0.30 -8.80 10.16 -14.94 -0.15 -8.95 16 19 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -26.16 13.96 55.50 0.77 -25.38 16 22 Si 0.88 19.76 27.74 -169.99 -4.71 15.05 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 26 N -0.45 -3.69 6.19 -11.03 -0.07 -3.76 16 27 C 0.06 0.31 10.31 -17.05 -0.18 0.13 16 28 H 0.06 -0.02 7.71 -51.93 -0.40 -0.42 16 29 H 0.06 -0.02 7.71 -51.93 -0.40 -0.42 16 30 H 0.11 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.19 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.06 0.43 7.98 -51.93 -0.41 0.02 16 33 H 0.07 0.45 8.03 -51.93 -0.42 0.03 16 34 H 0.08 0.63 5.80 -51.93 -0.30 0.33 16 35 H 0.10 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.09 1.12 7.51 -51.93 -0.39 0.73 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.35 6.03 8.43 -39.30 -0.33 5.70 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.37 7.98 5.76 -40.82 -0.24 7.74 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.18 0.31 6.47 -52.49 -0.34 -0.03 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -37.80 377.14 -6.24 -44.04 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.74 Total: 10.01 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: -0.75 Total: 17.62 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -0.69 Total: -67.12 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.02 Total: -25.28 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.80 -6.24 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664059629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.183 kcal (2) G-P(sol) polarization free energy of solvation -37.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds