Wall clock time and date at job start Tue Mar 31 2020 20:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99980 * 2 1 4 4 C 1.53003 * 109.46785 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47161 * 64.99916 * 4 3 2 6 6 C 1.46498 * 119.99874 * 274.99798 * 5 4 3 7 7 C 1.50703 * 109.46907 * 275.00275 * 6 5 4 8 8 H 1.08001 * 120.00049 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99988 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00266 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46821 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.47101 * 119.99857 * 11 9 7 14 14 H 1.48500 * 109.47126 * 240.00184 * 11 9 7 15 15 S 1.65595 * 119.99850 * 95.00088 * 5 4 3 16 16 O 1.42105 * 106.40149 * 203.53728 * 15 5 4 17 17 O 1.42098 * 106.40317 * 336.45602 * 15 5 4 18 18 N 1.65606 * 107.22013 * 89.99911 * 15 5 4 19 19 C 1.47068 * 136.05224 * 269.62921 * 18 15 5 20 20 C 1.53759 * 87.88385 * 152.96027 * 19 18 15 21 21 N 1.46903 * 114.08426 * 139.77792 * 20 19 18 22 22 C 1.46901 * 110.99968 * 86.56034 * 21 20 19 23 23 O 1.46300 * 111.00010 * 210.51263 * 21 20 19 24 24 C 1.42907 * 113.99755 * 119.99953 * 23 21 20 25 25 C 1.47058 * 136.06119 * 89.99708 * 18 15 5 26 26 H 1.09003 * 109.47661 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47311 * 300.00145 * 1 2 3 28 28 H 1.09001 * 109.47292 * 60.00460 * 1 2 3 29 29 H 1.08993 * 109.47214 * 59.99836 * 3 2 1 30 30 H 1.08998 * 109.47000 * 299.99858 * 3 2 1 31 31 H 1.08996 * 109.46879 * 304.99255 * 4 3 2 32 32 H 1.09003 * 109.46581 * 184.99901 * 4 3 2 33 33 H 1.09001 * 109.47378 * 34.99890 * 6 5 4 34 34 H 1.09002 * 109.46925 * 155.00631 * 6 5 4 35 35 H 0.97003 * 120.00349 * 180.02562 * 10 9 7 36 36 H 1.08998 * 113.46338 * 267.69113 * 19 18 15 37 37 H 1.08998 * 113.46903 * 38.13133 * 19 18 15 38 38 H 1.08995 * 114.39516 * 272.67057 * 20 19 18 39 39 H 1.08999 * 109.46862 * 59.99889 * 22 21 20 40 40 H 1.09000 * 109.46726 * 179.97438 * 22 21 20 41 41 H 1.08993 * 109.47052 * 299.99668 * 22 21 20 42 42 H 1.08996 * 109.46874 * 60.00461 * 24 23 21 43 43 H 1.09001 * 109.46900 * 180.02562 * 24 23 21 44 44 H 1.09001 * 109.46784 * 300.00168 * 24 23 21 45 45 H 1.09005 * 113.46436 * 321.86574 * 25 18 15 46 46 H 1.09000 * 113.46863 * 92.30073 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.0003 -0.8951 -1.3781 7 6 5.2993 -1.4247 -0.8274 8 1 6.0332 -0.7423 -0.4247 9 6 5.5512 -2.7802 -0.8385 10 7 4.6581 -3.6110 -1.3303 11 14 7.1616 -3.4367 -0.1566 12 1 7.9896 -2.3052 0.3330 13 1 6.8811 -4.3664 0.9668 14 1 7.8941 -4.1601 -1.2268 15 16 4.4454 1.5128 -2.5262 16 8 4.2757 0.7255 -3.6970 17 8 3.8177 2.7740 -2.3401 18 7 6.0733 1.7729 -2.3695 19 6 6.9272 2.7794 -1.7207 20 6 8.0131 1.6974 -1.6002 21 7 9.3736 2.1807 -1.8710 22 6 9.9874 2.7336 -0.6563 23 8 10.2033 1.1192 -2.4412 24 6 10.7211 1.4198 -3.7388 25 6 7.3013 1.1029 -2.8232 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5682 0.8410 32 1 3.9785 2.1765 0.0889 33 1 3.1677 -1.3220 -0.8189 34 1 3.9118 -1.1710 -2.4289 35 1 4.8351 -4.5647 -1.3378 36 1 7.2055 3.6020 -2.3794 37 1 6.5430 3.1199 -0.7593 38 1 7.9417 1.0862 -0.7005 39 1 10.0374 1.9600 0.1099 40 1 10.9941 3.0836 -0.8850 41 1 9.3865 3.5670 -0.2926 42 1 11.3384 2.3165 -3.6848 43 1 11.3245 0.5836 -4.0918 44 1 9.8949 1.5884 -4.4295 45 1 7.2357 0.0150 -2.8010 46 1 7.6781 1.4836 -3.7725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665776708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:21 Heat of formation + Delta-G solvation = -63.576146 kcal Electronic energy + Delta-G solvation = -29685.543670 eV Core-core repulsion = 25548.632445 eV Total energy + Delta-G solvation = -4136.911224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.40276 -37.72290 -36.62107 -36.57948 -35.32340 -35.20470 -33.11328 -32.53730 -29.47559 -27.90613 -26.73767 -26.53739 -25.72664 -25.63224 -23.86525 -22.79666 -21.76336 -20.35849 -18.32808 -17.42903 -17.03011 -16.82719 -16.29281 -16.12050 -15.84560 -15.65019 -15.21480 -15.15747 -14.67930 -14.42150 -14.33942 -13.77045 -13.64849 -13.29607 -13.12340 -12.71549 -12.65954 -12.47629 -12.31365 -12.22572 -12.02398 -11.89280 -11.66708 -11.58245 -11.49248 -11.21729 -11.07768 -11.04698 -10.86428 -10.62591 -10.41693 -10.33361 -10.05408 -9.93986 -9.70375 -9.27601 -8.92595 -8.73520 -8.40518 -7.99907 -6.02949 -4.08478 1.15111 2.53779 3.28207 3.36321 3.37420 3.45825 4.07485 4.18505 4.32882 4.42314 4.73294 4.86738 5.02158 5.24171 5.31074 5.37772 5.38544 5.43522 5.46070 5.47177 5.51486 5.56959 5.60127 5.65642 5.66880 5.70400 5.71196 5.77373 5.79152 5.95798 6.00107 6.07280 6.23089 6.31495 6.57143 6.71005 6.76174 6.97454 7.52219 7.55538 7.57241 7.80029 7.95887 8.25722 8.96153 9.56163 11.05107 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.005341 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.325840 B = 5240.730042 C = 6970.795483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.136 3.864 5 N -0.980 5.980 6 C 0.245 3.755 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.283 1.283 15 S 2.807 3.193 16 O -0.970 6.970 17 O -0.997 6.997 18 N -1.045 6.045 19 C 0.151 3.849 20 C 0.022 3.978 21 N -0.359 5.359 22 C 0.010 3.990 23 O -0.259 6.259 24 C 0.041 3.959 25 C 0.149 3.851 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.262 0.738 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 13.376 1.854 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.009 3.991 5 N -0.821 5.821 6 C 0.123 3.877 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.209 1.209 15 S 2.817 3.183 16 O -0.954 6.954 17 O -0.981 6.981 18 N -0.883 5.883 19 C 0.024 3.976 20 C -0.089 4.089 21 N -0.128 5.128 22 C -0.138 4.138 23 O -0.263 6.263 24 C -0.056 4.056 25 C 0.023 3.977 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.376 13.456 0.813 14.173 hybrid contribution 0.954 -0.919 1.219 1.800 sum 5.330 12.537 2.032 13.774 Atomic orbital electron populations 1.22704 0.82340 1.02471 0.99105 1.88106 1.18464 1.26998 1.95150 1.23093 0.95338 0.85207 0.99871 1.21067 0.91385 0.97603 0.89056 1.57709 1.77699 1.19550 1.27163 1.19309 0.98155 0.71315 0.98911 1.21586 1.02752 0.92110 1.41042 0.92192 1.24920 0.96647 0.96915 0.95308 1.69953 1.34321 1.03097 1.45228 0.86586 0.83833 0.79042 0.78761 1.19840 1.21088 1.20948 1.01143 0.71074 0.72341 0.73754 1.93580 1.84428 1.70890 1.46528 1.93525 1.73730 1.43535 1.87321 1.60492 1.21190 1.38014 1.68643 1.22340 0.86408 0.91291 0.97527 1.24136 0.85736 0.98585 1.00403 1.67681 0.97863 1.18907 1.28360 1.22672 1.00906 0.99361 0.90902 1.90762 1.66804 1.35299 1.33433 1.22633 0.97707 1.00809 0.84497 1.22254 0.80063 0.99671 0.95708 0.89823 0.94785 0.94611 0.93123 0.93299 0.89153 0.90444 0.92391 0.93651 0.92798 0.89410 0.90597 0.88599 0.94041 0.90781 0.89417 0.94091 0.89537 0.93524 0.88964 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.86 9.02 -35.23 -0.32 -7.17 16 3 C 0.04 0.72 6.28 37.16 0.23 0.95 16 4 C 0.14 2.37 5.79 -4.04 -0.02 2.34 16 5 N -0.98 -20.55 2.81 -115.66 -0.33 -20.87 16 6 C 0.24 6.23 5.27 -5.19 -0.03 6.20 16 7 C -0.54 -14.14 9.38 -34.44 -0.32 -14.47 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 11 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 S 2.81 57.42 6.64 -107.50 -0.71 56.70 16 16 O -0.97 -23.46 16.69 -57.17 -0.95 -24.41 16 17 O -1.00 -20.29 17.11 -57.17 -0.98 -21.27 16 18 N -1.04 -18.03 4.29 -125.06 -0.54 -18.57 16 19 C 0.15 2.00 8.55 -8.37 -0.07 1.93 16 20 C 0.02 0.31 3.85 -67.46 -0.26 0.05 16 21 N -0.36 -4.56 5.04 -113.66 -0.57 -5.14 16 22 C 0.01 0.10 10.13 60.07 0.61 0.71 16 23 O -0.26 -3.67 10.61 -13.92 -0.15 -3.81 16 24 C 0.04 0.44 11.51 101.05 1.16 1.60 16 25 C 0.15 2.46 8.14 -8.52 -0.07 2.39 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 32 H 0.08 1.13 7.61 -51.93 -0.40 0.73 16 33 H 0.06 1.58 6.60 -51.93 -0.34 1.23 16 34 H 0.05 1.29 6.91 -51.93 -0.36 0.93 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.50 8.13 -51.93 -0.42 1.08 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.49 7.82 -51.93 -0.41 0.09 16 45 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 46 H 0.08 1.19 7.82 -51.93 -0.41 0.79 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -34.28 396.72 -8.40 -42.68 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.79 Total: -0.05 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 2.25 Total: 4.96 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.70 Total: -69.75 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -2.40 Total: -56.67 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -0.71 Total: 56.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.28 -8.40 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665776708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.897 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds